iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.30e-25	88.5	361	397

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf...sdtllvsGsdDgtikvWDlrtgvl 35
           H++ vtc+af   +d++++sGs Dg++++WD++++++
   Q: 361  HNNFVTCVAFnpvDDNYFISGSIDGKVRIWDVTRCRV 397
           8899********766*****************99876 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MGTPGDEEDE DRFFDAPEVV SDDFGLHLWT STPESVSTRR RKFLQSMGLS FKKTATDDDS 60
EDELEPSHTD SNVVSEVVNV SSGVKEIDLL VRNESTTSSG FDVSSVSSSD TDDQTLLARN 120

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Nucleotide Sequence
(Fasta)

AGCAATCTCT TCCACGTTAT TTATTTAGTT AGGTCGTCTA CTATTAAACT ATGTACAATT 60
CCTCCATTTT TGTGGCGAAA TTTCAGATTT TTCTATTTTG GTCTTTGGGT TTGACTCTGC 120

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Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

KEGG

ath:AT1G64610

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006273	Arabidopsis lyrata	87.79	0.00e+00	1059.00
IUUC-Bol-015863	Brassica oleracea	75.95	0.00e+00	748.00
IUUC-Bra-017217	Brassica rapa	75.35	0.00e+00	723.00
IUUC-Cme-027130	Cyanidioschyzon merolae	33.82	1.00e-45	178.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence