iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bra-017365

Ensembl Protein ID

Bra031186.1-P

UniProt Accession

M4EQW3; M4EQW3_BRARP

Protein Name

Uncharacterized protein

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Bra031186	Bra031186.1	Bra031186.1-P

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.00e-40	134.5	50	86
UBD/Beta-Prp	5.70e-74	250.0	3	239

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sdtllvsGsdDgtikvWDlrtgvll 36
           H+++v++++f  s +l+vsG+dD +ikvW+++t+++l
   Q: 50   HEGPVRGVHFhiSQPLFVSGGDDYKIKVWNYKTHKCL 86
           9**********9779*******************997 PP

UBD/Beta-Prp

   S: 4    tlkghhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvls 99
           t +++ +++++ + f+p++++++++  +g i++wd+++ +l+ ++++he++v+ v f+ +++++v+g++D+ ikvw+++t kc+ tl gh d++++
   Q: 3    TKFETSSNQVRGLSFHPKRPWILSSLHTGVIQLWDYRMTTLIDTFEEHEGPVRGVHFHISQPLFVSGGDDYKIKVWNYKTHKCLFTLLGHLDYIRT 98
           667788899999************************************************************************************ PP
   S: 100  lsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdl...........................kt 168
           ++f+ +  ++vs+s+d+tir+w++++++c++ +l+gh++ v+c+++hp+++llvs+slD+tvr+Wd+                             
   Q: 99   VQFHHECPWIVSASDDQTIRIWNWQSRTCVS-VLAGHNHYVMCASFHPKEDLLVSASLDQTVRVWDIaplrnkkktpladdddimgftqmnsdlFD 193
           *******************************.*****************************************************99977666433 PP
   S: 169  gkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecv 215
           +++ + l+g h++ v++ +f+++ + +vsg++d++vklw   +g+++
   Q: 194  ATVKYVLEG-HDRGVNWAAFHPTLPLIVSGADDRKVKLWRTNEGRTL 239
           444444466.*******************************988774 PP

Organism

Brassica rapa

Protein Sequence
(Fasta)

MLTKFETSSN QVRGLSFHPK RPWILSSLHT GVIQLWDYRM TTLIDTFEEH EGPVRGVHFH 60
ISQPLFVSGG DDYKIKVWNY KTHKCLFTLL GHLDYIRTVQ FHHECPWIVS ASDDQTIRIW 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCTGACCA AGTTCGAGAC CAGTAGCAAC CAAGTTAGAG GTTTGAGCTT TCACCCTAAA 60
CGACCATGGA TTCTCTCCAG TTTGCACACT GGCGTCATCC AGCTCTGGGA TTATCGTATG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0238--DNA-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0804--Transcription
KW-0805--Transcription regulation
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR003340--B3_DNA-bd
IPR010714--Coatomer_asu_C
IPR006692--Coatomer_WD-assoc_reg
IPR015300--DNA-bd_pseudobarrel
IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50863--B3
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF02362--B3
PF04053--Coatomer_WDAD
PF06957--COPI_C
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM01019--B3
SM00320--WD40

Gene Ontology

GO:0030126--C:COPI vesicle coat
GO:0005634--C:nucleus
GO:0003677--F:DNA binding
GO:0005198--F:structural molecule activity
GO:0006886--P:intracellular protein transport
GO:0006355--P:regulation of transcription, DNA-templated
GO:0006351--P:transcription, DNA-templated
GO:0016192--P:vesicle-mediated transport

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence