iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099232

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000342

Gene Name

POPTRDRAFT_867192; POPTR_0006s28540g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0006s28540	POPTR_0006s28540.1	POPTR_0006s28540.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
DUB/USP	2.30e-74	251.7	181	486

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

DUB/USP

   S: 1    tGlkNlgNtCYmNSvLQcLsnipelrellle.kkkeklneenpkepkgellkslqklfeelwkskkkavsprellkalkkeaeefsgyeqq 90
           +Gl N gN+C+ N vLQcL+ +++l  +ll+  ++ +++++     + ++l+++q+ +e   ++++  +sp ++++ l ++  ++   +q+
   Q: 181  CGLLNCGNSCFANVVLQCLTYTRPLVAYLLKkGHQTECKHN-----DWCFLCEFQSHVERA-SQSTLPFSPINIISRLPNIGGNLGYGRQE 265
           7******************************4555566555.....67**********999.99999************************ PP
   S: 91   DaqEflaflldqleeelkkeknkpkeeeeeedkselsdeaeekkkkknkslisdlFqgqlksqikclecdnvssreepfldlslpvpgkee 181
           Da+Ef++  +d++++ +         +e++ +       +  ++ ++++++i+++F+g+l+sq++c +c+++s+++e+++dl+++++g+  
   Q: 266  DAHEFMRLAIDTMQSVC--------LDEFGGE-------KAVEPASQETTIIQHIFGGRLQSQVICTKCNKISNQFENMMDLTVEIHGDAA 341
           *****************........3344444.......789999*********************************************6 PP
   S: 182  tkkeslqdcLesftkeeelegenkyycekckkkqeaekklklkklPevLilhLkRfsfseeqksrekinkkvefpleLdlspfctspeekq 272
               sl++cL++ft +e l+gen+y+c++c+++++a k+l++++ P+vL++ LkRf    + ++  k+nk+v+fp++Ldlsp++++  ++ 
   Q: 342  ----SLEECLDQFTDKEWLHGENMYKCDRCNDYVKAWKRLTIQRAPNVLTIALKRF----QSGRFGKLNKRVTFPEMLDLSPYMSEGGDG- 423
           ....8***************************************************....346668********************5555. PP
   S: 273  kekkkYeLiavvvHsGslss...GHYvayvknekgkWllfdDskVtevkeeevleetgstaYvlfYkr 337
             ++ Y+L+avvvH   l+    GHY++y k+ +g+W ++dD kV++v+ +evl+   + aY+l+Y r
   Q: 424  --TDVYKLYAVVVHVDMLNAsffGHYICYTKDFHGNWHRIDDCKVSSVELDEVLS---QGAYMLVYSR 486
           ..89**********995554455********************************...********87 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MHVGGITVDL NWLLQFIFTV FVIGLGLLHL VKNTASKYFE VGANFEAAES SHTAIDPNII 60
NQAVEAEEDS SICGNCGGFG TKKCSRCKSV RYCSQRCQEA DWKAGHKLKC KDFKLNSSQT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAAAAAATAA AAACCCTAAC AAAACACTAT TCACAAACTC TCCTCTCAAA ATCCCTAATT 60
TACATGTAAA AAGAAAGGAG AAAAACACGC AAAAAATCCT TTGATTAATG CATGCAAACA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001394--Peptidase_C19_UCH
IPR018200--USP_CS
IPR028889--USP_dom
IPR002893--Znf_MYND

PROSITE

PS00972--USP_1
PS50235--USP_3
PS01360--ZF_MYND_1
PS50865--ZF_MYND_2

Pfam

PF00443--UCH
PF01753--zf-MYND

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0046872--F:metal ion binding
GO:0036459--F:thiol-dependent ubiquitinyl hydrolase activity
GO:0016579--P:protein deubiquitination
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0006s28540g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002997	Amborella trichopoda	58.45	5.00e-167	580.00
IUUC-Aly-005863	Arabidopsis lyrata	61.21	0.00e+00	690.00
IUUC-Ath-007334	Arabidopsis thaliana	65.23	0.00e+00	697.00
IUUC-Bol-016021	Brassica oleracea	65.41	0.00e+00	661.00
IUUC-Bra-017569	Brassica rapa	64.03	0.00e+00	654.00
IUUC-Oin-079613	Oryza indica	61.12	5.00e-161	561.00
IUUC-Ppa-095982	Physcomitrella patens	56.02	1.00e-149	523.00
IUUC-Sbi-113982	Sorghum bicolor	62.16	7.00e-171	593.00
IUUC-Tae-125546	Triticum aestivum	62.92	6.00e-165	574.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence