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Basic Information Integrated Annotations

Tag Content
UUCD2 ID IUUC-Ath-007252
UUCD1 version UUC-ArT-00726
Ensembl Protein ID AT1G48630.1
UniProt Accession Q9C4Z6; Q42130; Q8LAF2; GPLPB_ARATH
Genbank Protein ID AAG60127.1; AAG50846.1; AEE32329.1; AAL24080.1; AAM14291.1; AAM65407.1; CAA81323.1
Protein Name Receptor for activated C kinase 1B; Guanine nucleotide-binding protein subunit beta-like protein B
Genbank Nucleotide ID AC073555; AC074308; CP002684; AY059723; AY091352; AY087855; Z26552
Gene Name RACK1B; At1g48630; F11I4.18; F9P7.2
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT1G48630 AT1G48630.1 AT1G48630.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
iRefIndexPINAHINTMentha
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 7.10e-46 153.0 147 182
UBD/Beta-Prp 6.90e-59 200.3 12 160
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sd..tllvsGsdDgtikvWDlrt 32
    gH+++v+c++f ++ +++vs+s+D+t+kvW+l
   Q: 147 GHKEWVSCVRFspNTlvPTIVSASWDKTVKVWNLQN 182
    8***********5446667**************865 PP
   


   UBD/Beta-Prp

   S: 7    ghhksvitcvkf.spdksllatgsrdgtikvwdvttgkl.....lrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvl 98
    +h++ +t+++ +++++++t+srd++i++w++t++++ r++ gh+ +v++v +s+dg++ ++gs D+ +++wdl tg+ ++ + gh+++vl
   Q: 12 CAHTDMVTAIATpVDNSDVIVTSSRDKSIILWKLTKEDKsygvaQRRMTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLATGESTRRFVGHTKDVL 109
    58999******999***********************999***99***************************************************** PP
   S: 99 slsfspsgdklvsGshdrtirvwdletgqclee..tlsghdgvvncvvvhpd 148
    s++fs ++ +vs+s+drti++w++ +c ++ +gh+++v+cv+++p+
   Q: 110 SVAFSTDNRQIVSASRDRTIKLWNTLG-ECKYTisEADGHKEWVSCVRFSPN 160
    ***********************7754.4444446899***********995 PP
   

Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description



     Minor component of the RACK1 regulatory proteins that play a role in multiple signal transduction pathways. Involved in multiple hormone responses and developmental processes (PubMed:18947417). MAPK cascade scaffolding protein involved in the protease IV and ArgC signaling pathway but not the flg22 pathway (PubMed:25731164).
Minor component of the RACK1 regulatory proteins that play a role in multiple signal transduction pathways. Involved in multiple hormone responses and developmental processes (PubMed:18947417). MAPK cascade scaffolding protein involved in the protease IV and ArgC signaling pathway but not the flg22 pathway (PubMed:25731164).
Protein Sequence
(Fasta)
MAEGLVLKGT MCAHTDMVTA IATPVDNSDV IVTSSRDKSI ILWKLTKEDK SYGVAQRRMT 60
GHSHFVQDVV LSSDGQFALS GSWDGELRLW DLATGESTRR FVGHTKDVLS VAFSTDNRQI 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Ath-007252|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
AACCCTAATT ATCTCTAACT ATAAATACTC TCGGTTTCTC GTTACCTCCA TTTTGCCCTC 60
TCCCATTTTT GTCGCCGAAA CCCTAAATCT CGACCTCAAA CCCTGAACCA TGGCTGAAGG 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Ath-007252|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0687--Ribonucleoprotein
KW-0689--Ribosomal protein
KW-0807--Transducer
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005829--C:cytosol
GO:0022626--C:cytosolic ribosome
GO:0005634--C:nucleus
GO:0005078--F:MAP-kinase scaffold activity
GO:0004871--F:signal transducer activity
GO:0071215--P:cellular response to abscisic acid stimulus
GO:0009967--P:positive regulation of signal transduction
GO:0006417--P:regulation of translation
GO:0042254--P:ribosome biogenesis
GO:0048364--P:root development
GO:0009845--P:seed germination
GO:0048367--P:shoot system development

KEGG ath:AT1G48630
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Atr-002694 Amborella trichopoda 77.61 3.00e-152 530.00
IUUC-Aly-005832 Arabidopsis lyrata 98.47 0.00e+00 654.00
IUUC-Bdi-014690 Brachypodium distachyon 71.56 1.00e-135 475.00
IUUC-Bol-016577 Brassica oleracea 91.79 7.00e-179 619.00
IUUC-Bra-016696 Brassica rapa 92.66 7.00e-179 618.00
IUUC-Cne-026930 Cryptococcus neoformans 64.09 2.00e-123 434.00
IUUC-Mla-058909 Melampsora laricipopulina 64.09 7.00e-122 429.00
IUUC-Mac-064447 Musa acuminata 69.14 1.00e-129 454.00
IUUC-Oni-082682 Oryza nivara 68.42 6.00e-134 469.00
IUUC-Olu-087817 Ostreococcus lucimarinus 68.21 4.00e-135 473.00
IUUC-Ppa-095752 Physcomitrella patens 72.62 2.00e-141 494.00
IUUC-Pgr-103375 Puccinia graminis 49.23 3.00e-83 300.00
IUUC-Ptt-103839 Puccinia triticina 65.02 3.00e-122 430.00
IUUC-Smo-109017 Selaginella moellendorffii 68.90 3.00e-134 470.00
IUUC-Sit-110680 Setaria italica 70.33 4.00e-134 470.00
IUUC-Stu-112757 Solanum tuberosum 82.72 2.00e-151 527.00
IUUC-Sre-115107 Sporisorium reilianum 61.61 1.00e-119 421.00
IUUC-Vvi-131115 Vitis vinifera 85.32 9.00e-165 571.00
Created Date 25-Jun-2017

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