iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sar-113038

Ensembl Protein ID

ENSSARP00000001404.1

UniProt Accession

B3RF58; B3RF58_SORAR

Genbank Protein ID

ACE77684.1

Protein Name

PDZ and LIM domain protein 4 (Predicted)

Genbank Nucleotide ID

DP000784

Gene Name

LDB3; PDLIM4

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSSARG00000001530.1	ENSSART00000001545.1	ENSSARP00000001404.1

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
UBD/Alpha-Helix/UIM	48.48	6.00e-03	40.00	IUUC-Ath-006630

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Sorex araneus

Protein Sequence
(Fasta)

MSYSVTLTGP GPWGFRLQGG KDFNMPLTIS RITPGSKAAQ SQLSQGDMVV AIDGVNTDTM 60
THLEAQNKIK SASYNLSLTL QKSKRPVPIS TAPPPMQSPL PVIPHQKDPT LDANGSLMAP 120

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Nucleotide Sequence
(Fasta)

ATGTCCTACA GCGTGACCCT CACCGGCCCC GGTCCCTGGG GCTTCCGCCT GCAGGGGGGC 60
AAGGACTTCA ATATGCCCCT CACCATCTCG CGGGTGAGTG TGCCATGCCT GCAGCCCGTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Interpro

IPR031847--DUF4749
IPR001478--PDZ
IPR001781--Znf_LIM

PROSITE

PS00478--LIM_DOMAIN_1
PS50023--LIM_DOMAIN_2
PS50106--PDZ

Pfam

PF15936--DUF4749
PF00412--LIM
PF00595--PDZ

SMART

SM00132--LIM
SM00228--PDZ

Gene Ontology

GO:0008270--F:zinc ion binding

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000663	Aegilops tauschii	31.25	4.00e-03	35.80
IUUC-Aml-001484	Ailuropoda melanoleuca	40.91	5.00e-18	84.70
IUUC-Atr-002465	Amborella trichopoda	36.36	1.90e-02	33.50
IUUC-Aca-004512	Anolis carolinensis	50.59	4.00e-21	95.10
IUUC-Aly-005589	Arabidopsis lyrata	32.76	3.00e-03	36.20
IUUC-Ath-006630	Arabidopsis thaliana	48.48	3.00e-04	39.70
IUUC-Ame-011626	Astyanax mexicanus	45.05	2.00e-20	92.80
IUUC-Bta-012510	Bos taurus	40.24	1.00e-16	80.10
IUUC-Bol-016606	Brassica oleracea	38.24	9.00e-04	38.90
IUUC-Bra-016788	Brassica rapa	38.24	7.10e-02	31.20
IUUC-Cja-019248	Callithrix jacchus	40.66	1.00e-17	83.20
IUUC-Cfa-020352	Canis familiaris	42.17	1.00e-17	83.20
IUUC-Cpo-021667	Cavia porcellus	76.96	3.00e-133	468.00
IUUC-Csa-024190	Chlorocebus sabaeus	39.56	3.00e-17	81.60
IUUC-Dre-027418	Danio rerio	41.76	6.00e-19	87.80
IUUC-Dor-030439	Dipodomys ordii	45.16	1.00e-05	43.50
IUUC-Dse-031181	Dothistroma septosporum	29.41	1.00e-07	51.20
IUUC-Dme-031753	Drosophila melanogaster	29.87	4.00e-08	52.00
IUUC-Eca-034183	Equus caballus	41.76	1.00e-18	86.70
IUUC-Eeu-034958	Erinaceus europaeus	42.86	2.00e-19	88.60
IUUC-Fca-035680	Felis catus	42.86	3.00e-19	88.60
IUUC-Fal-037626	Ficedula albicollis	63.73	3.00e-91	328.00
IUUC-Gmo-038558	Gadus morhua	46.91	8.00e-20	90.50
IUUC-Gga-040724	Gallus gallus	33.78	6.00e-08	52.40
IUUC-Gac-041738	Gasterosteus aculeatus	45.35	2.00e-19	89.70
IUUC-Gma-043003	Glycine max	31.03	4.00e-04	38.90
IUUC-Ggo-044609	Gorilla gorilla	39.56	5.00e-17	81.30
IUUC-Hsa-045868	Homo sapiens	39.56	5.00e-17	82.00
IUUC-Hvu-047551	Hordeum vulgare	31.25	4.00e-03	35.40
IUUC-Itr-048876	Ictidomys tridecemlineatus	39.56	2.00e-17	82.40
IUUC-Lpe-050758	Leersia perrieri	36.36	3.90e-02	32.70
IUUC-Loc-052212	Lepisosteus oculatus	44.05	3.00e-18	85.50
IUUC-Laf-053824	Loxodonta africana	40.66	1.00e-17	83.20
IUUC-Mcc-054962	Macaca mulatta	39.56	3.00e-17	81.60
IUUC-Meu-056007	Macropus eugenii	47.50	2.00e-18	87.00
IUUC-Mtr-058103	Medicago truncatula	31.03	4.00e-04	38.90
IUUC-Mla-059141	Melampsora laricipopulina	34.72	1.00e-08	54.70
IUUC-Mmr-060595	Microcebus murinus	70.89	4.00e-126	444.00
IUUC-Mdo-062935	Monodelphis domestica	40.00	2.00e-15	75.90
IUUC-Mmu-063244	Mus musculus	40.66	2.00e-18	85.90
IUUC-Mac-065516	Musa acuminata	35.00	3.60e-02	30.00
IUUC-Mpu-065888	Mustela putorius furo	44.29	2.00e-16	79.30
IUUC-Mlu-067124	Myotis lucifugus	40.66	1.00e-17	83.60
IUUC-Ncr-068674	Neurospora crassa	34.43	6.00e-09	55.80
IUUC-Nle-069063	Nomascus leucogenys	39.56	4.00e-17	81.30
IUUC-Opr-071221	Ochotona princeps	45.24	4.00e-19	89.00
IUUC-Ont-072000	Oreochromis niloticus	43.02	3.00e-19	88.60
IUUC-Oan-073012	Ornithorhynchus anatinus	38.71	7.00e-11	60.80
IUUC-Ocu-074376	Oryctolagus cuniculus	41.67	2.00e-17	82.80
IUUC-Oba-075638	Oryza barthii	31.37	4.00e-03	35.80
IUUC-Obr-076045	Oryza brachyantha	31.25	1.00e-02	34.30
IUUC-Ogl-077659	Oryza glaberrima	31.37	4.00e-03	35.40
IUUC-Ogu-078055	Oryza glumaepatula	26.67	8.00e-03	34.70
IUUC-Oin-079737	Oryza indica	35.71	3.60e-02	33.50
IUUC-Olo-081092	Oryza longistaminata	26.98	1.00e-02	35.00
IUUC-Oni-082309	Oryza nivara	26.67	8.00e-03	34.70
IUUC-Opu-083412	Oryza punctata	31.37	6.00e-03	35.40
IUUC-Oru-085213	Oryza rufipogon	26.67	8.00e-03	34.70
IUUC-Osa-085312	Oryza sativa	31.37	4.00e-03	35.40
IUUC-Ola-086915	Oryzias latipes	47.56	6.00e-20	90.90
IUUC-Olu-087728	Ostreococcus lucimarinus	45.83	7.90e-01	27.70
IUUC-Oga-088393	Otolemur garnettii	44.58	8.00e-19	87.00
IUUC-Oar-089421	Ovis aries	40.24	1.00e-16	80.10
IUUC-Ptr-091089	Pan troglodytes	39.56	6.00e-17	81.30
IUUC-Pan-092163	Papio anubis	39.56	4.00e-17	81.60
IUUC-Psi-093043	Pelodiscus sinensis	45.24	2.00e-18	86.30
IUUC-Pno-094933	Phaeosphaeria nodorum	30.77	5.00e-08	52.40
IUUC-Ppa-096027	Physcomitrella patens	36.59	1.00e-03	37.40
IUUC-Pfo-097294	Poecilia formosa	95.18	4.00e-49	188.00
IUUC-Pab-097988	Pongo abelii	39.56	4.00e-17	81.60
IUUC-Pop-098996	Populus trichocarpa	29.31	2.00e-03	36.60
IUUC-Pca-100131	Procavia capensis	40.66	1.00e-17	84.30
IUUC-Pva-102706	Pteropus vampyrus	40.66	8.00e-18	84.70
IUUC-Ptt-104003	Puccinia triticina	31.25	4.00e-05	42.40
IUUC-Pte-104256	Pyrenophora teres	27.27	1.00e-06	47.80
IUUC-Pyt-104720	Pyrenophora triticirepentis	27.27	3.00e-06	45.80
IUUC-Rno-104992	Rattus norvegicus	40.91	1.00e-18	86.30
IUUC-Sha-107463	Sarcophilus harrisii	46.43	4.00e-19	87.80
IUUC-Smo-108841	Selaginella moellendorffii	36.59	1.70e-02	33.10
IUUC-Sit-110147	Setaria italica	35.71	2.80e-02	32.70
IUUC-Sly-111106	Solanum lycopersicum	29.31	1.90e-02	33.50
IUUC-Stu-112570	Solanum tuberosum	29.31	1.80e-02	33.50
IUUC-Sbi-114441	Sorghum bicolor	37.50	4.60e-02	32.00
IUUC-Sre-115199	Sporisorium reilianum	37.68	3.00e-10	60.50
IUUC-Ssc-115811	Sus scrofa	42.86	4.00e-19	88.20
IUUC-Tgu-116824	Taeniopygia guttata	93.98	2.00e-48	186.00
IUUC-Tca-121863	Theobroma cacao	29.31	1.40e-02	33.90
IUUC-Tae-125777	Triticum aestivum	31.25	4.00e-03	35.80
IUUC-Tur-126326	Triticum urartu	31.25	5.00e-03	35.40
IUUC-Tbe-127395	Tupaia belangeri	97.06	9.00e-34	137.00
IUUC-Ttr-128236	Tursiops truncatus	51.61	9.00e-07	47.80
IUUC-Uma-129653	Ustilago maydis	44.93	2.00e-11	64.30
IUUC-Vpa-130784	Vicugna pacos	63.47	1.00e-54	207.00
IUUC-Vvi-131286	Vitis vinifera	37.50	9.40e-02	31.20
IUUC-Xma-134125	Xiphophorus maculatus	47.50	3.00e-58	219.00
IUUC-Zma-135630	Zea mays	35.71	2.60e-02	33.10

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence