iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Gma-043258

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000837

Gene Name

LOC100816263; GLYMA_04G070200

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
GLYMA04G07460	GLYMA04G07460.1	GLYMA04G07460.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.00e-25	88.4	673	703
UBD/Beta-Prp	3.10e-47	162.8	623	762

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDl 30
           H++ +t+++f ++ ++l+++s D+t++vWD+
   Q: 673  HSSLITDVRFsPSmPRLATSSFDKTVRVWDV 703
           9**********777****************8 PP

UBD/Beta-Prp

   S: 85   kcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdl.ktgkllrtltg 177
           + v ++++ +++v +++fs +g+ l+sG+hd+ + +w +++ +    tl++h+++++ v+++p+   l+++s D+tvr+Wd+ + g  lrt+tg
   Q: 623  SDVNSVRASTSKVACCHFSSDGKLLASGGHDKRVVLWYTDSLKQKA-TLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVdNPGYSLRTFTG 715
           3344444555555555555555555555555555555555555555.55555555555555555555555555555555555334455555555 PP
   S: 178  ghtdsvyslsfdsng.kelvsgsldgtvklwdlqtgecvrtlnghtdn 224
            h  sv sl+f++n+   + s++ dg +++w++ +g+c r  +g t++
   Q: 716  -HSTSVMSLDFHPNKdDLICSCDGDGEIRYWSINNGSCARVSKGGTTQ 762
           .55555555555555333345555555555555555555555555544 PP

Organism

Glycine max

Protein Sequence
(Fasta)

MSQTNWEADK MLDVYIHDYL VKRDLKASAQ AFQAEGKVSS DPVAIDAPGG FLFEWWSVFW 60
DIFIARTNEK HSEVAASYIE TQLIKAREQQ QQQNQQQPQP QQSQHQQQQQ QQHMQMQQLL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACAAATATAA AATTCCTAAA ATCTAGAGGC GTTCTGTTCT TCTTTGGATT TTCTTCTTCT 60
TCGCTACTCT TTTTATTTTG CCTCCTTCTC TTTCTTTCTC TACCTATCTA TTTCTATTCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR023413--GFP-like
IPR006594--LisH
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08513--LisH
PF00400--WD40

SMART

SM00667--LisH
SM00320--WD40

KEGG

gmx:100816263

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000855	Aegilops tauschii	60.52	0.00e+00	738.00
IUUC-Aly-006446	Arabidopsis lyrata	74.14	0.00e+00	1011.00
IUUC-Ath-006594	Arabidopsis thaliana	69.85	0.00e+00	982.00
IUUC-Bol-015720	Brassica oleracea	73.10	0.00e+00	943.00
IUUC-Bra-017481	Brassica rapa	72.67	0.00e+00	984.00
IUUC-Mtr-058613	Medicago truncatula	87.15	0.00e+00	1154.00
IUUC-Ogu-078816	Oryza glumaepatula	58.93	0.00e+00	671.00
IUUC-Ome-081375	Oryza meridionalis	58.80	0.00e+00	668.00
IUUC-Opu-083283	Oryza punctata	57.87	0.00e+00	659.00
IUUC-Pop-098994	Populus trichocarpa	81.03	0.00e+00	1068.00
IUUC-Ppe-102018	Prunus persica	78.61	0.00e+00	1028.00
IUUC-Tae-125545	Triticum aestivum	57.95	0.00e+00	653.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence