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Basic Information Integrated Annotations

Tag Content
UUCD2 ID IUUC-Ath-007584
UUCD1 version UUC-ArT-00278
Ensembl Protein ID AT1G18080.1
UniProt Accession O24456; C0Z2G7; Q9LDI1; GBLPA_ARATH
Genbank Protein ID AAB82647.1; AAF97825.1; AAF78369.1; AEE29673.1; AAK59512.1; AAL34190.1; BAH56896.1; AAM66016.1
Protein Name Receptor for activated C kinase 1A; Guanine nucleotide-binding protein subunit beta-like protein A; WD-40 repeat auxin-dependent protein ARCA
Genbank Nucleotide ID U77381; AC034107; AC069551; CP002684; AY035007; AY063016; AK318781; AY088480
Gene Name RACK1A; ARCA; At1g18080; T10F20.9; T10O22.6
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT1G18080 AT1G18080.1 AT1G18080.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
iRefIndexPINAHINTMentha
Protein 3D Structure
PDBMMDB
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 1.60e-45 151.9 148 184
UBD/Beta-Prp 1.90e-77 261.3 11 234
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sd..tllvsGsdDgtikvWDlrtg 33
    gH d+v+c++f ++ +++vs+s+D+t+kvW+l+ +
   Q: 148 GHRDWVSCVRFspNTlqPTIVSASWDKTVKVWNLSNC 184
    8***********6445677**************9765 PP
   


   UBD/Beta-Prp

   S: 6    kghhksvitcvkf.spdksllatgsrdgtikvwdvttgkl.....lrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsv 97
    + +h++ +t+++ +++ ++++++srd++i++w++t+ ++ r+l gh+ +v +v +s+dg++ ++gs D+ +++wdl +g ++ + gh+++v
   Q: 11 MRAHTDMVTAIATpIDNADIIVSASRDKSIILWKLTKDDKaygvaQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDV 108
    679999*******************************9999***9***************************************************** PP
   S: 98 lslsfspsgdklvsGshdrtirvwdletgqclee...tlsghdgvvncvvvhpdg..nllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfds 190
    ls++fs ++ +vs+s+drti++w++ + c ++ +gh+++v+cv+++p++ +vs+s D+tv++W+l++ kl tl g ht++v +++++
   Q: 109 LSVAFSLDNRQIVSASRDRTIKLWNTLGE-CKYTiseGGEGHRDWVSCVRFSPNTlqPTIVSASWDKTVKVWNLSNCKLRSTLAG-HTGYVSTVAVSP 204
    ************************87543.33333448899************999789************************99.************ PP
   S: 191 ngkelvsgsldgtvklwdlqtgecvrtlng 220
    +g ++sg++dg v lwdl +g+ +++l++
   Q: 205 DGSLCASGGKDGVVLLWDLAEGKKLYSLEA 234
    ************************999987 PP
   

Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description



     Major component of the RACK1 regulatory proteins that play a role in multiple signal transduction pathways. Involved in multiple hormone responses and developmental processes (PubMed:16829549, PubMed:18715992, PubMed:18947417). MAPK cascade scaffolding protein involved in the protease IV and ArgC signaling pathway but not the flg22 pathway (PubMed:25731164).
Major component of the RACK1 regulatory proteins that play a role in multiple signal transduction pathways. Involved in multiple hormone responses and developmental processes (PubMed:16829549, PubMed:18715992, PubMed:18947417). MAPK cascade scaffolding protein involved in the protease IV and ArgC signaling pathway but not the flg22 pathway (PubMed:25731164).
Protein Sequence
(Fasta)
MAEGLVLKGT MRAHTDMVTA IATPIDNADI IVSASRDKSI ILWKLTKDDK AYGVAQRRLT 60
GHSHFVEDVV LSSDGQFALS GSWDGELRLW DLAAGVSTRR FVGHTKDVLS VAFSLDNRQI 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Ath-007584|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
AATCCATTTT TAGTTTCTAT CATATAAATA GCTTCTTGTG TTTTTCACGC CCTTCTTCTT 60
TGTATTTCCG CCTCCCCCGA GAAAACGAAA ACCCTAGTTT CAGAGGCATC TCCAGACACC 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Ath-007584|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0002--3D-structure
KW-0025--Alternative splicing
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0687--Ribonucleoprotein
KW-0689--Ribosomal protein
KW-0807--Transducer
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0009507--C:chloroplast
GO:0005737--C:cytoplasm
GO:0005829--C:cytosol
GO:0022626--C:cytosolic ribosome
GO:0005634--C:nucleus
GO:0005078--F:MAP-kinase scaffold activity
GO:0032947--F:protein complex scaffold
GO:0004871--F:signal transducer activity
GO:0071215--P:cellular response to abscisic acid stimulus
GO:0010476--P:gibberellin mediated signaling pathway
GO:0009967--P:positive regulation of signal transduction
GO:0006417--P:regulation of translation
GO:0046686--P:response to cadmium ion
GO:0009739--P:response to gibberellin
GO:0009749--P:response to glucose
GO:0042254--P:ribosome biogenesis
GO:0009845--P:seed germination
GO:0010228--P:vegetative to reproductive phase transition of meristem

KEGG ath:AT1G18080
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000395 Aegilops tauschii 72.41 7.00e-121 426.00
IUUC-Aly-005806 Arabidopsis lyrata 99.39 0.00e+00 660.00
IUUC-Ago-007720 Ashbya gossypii 48.62 2.00e-87 315.00
IUUC-Acl-008156 Aspergillus clavatus 60.49 4.00e-115 406.00
IUUC-Afu-008867 Aspergillus fumigatus 60.80 7.00e-116 409.00
IUUC-Bgr-012064 Blumeria graminis 61.11 1.00e-116 412.00
IUUC-Bci-013862 Botrytis cinerea 61.42 1.00e-117 415.00
IUUC-Bol-015949 Brassica oleracea 96.33 0.00e+00 641.00
IUUC-Bra-016871 Brassica rapa 96.94 0.00e+00 647.00
IUUC-Cel-018335 Caenorhabditis elegans 56.84 9.00e-99 352.00
IUUC-Cin-025647 Ciona intestinalis 62.23 5.00e-116 409.00
IUUC-Csv-026027 Ciona savignyi 61.92 1.00e-115 408.00
IUUC-Cgl-026718 Colletotrichum gloeosporioides 63.39 3.00e-109 387.00
IUUC-Dme-032118 Drosophila melanogaster 63.38 3.00e-118 417.00
IUUC-Fox-037702 Fusarium oxysporum 62.35 9.00e-119 419.00
IUUC-Fso-038384 Fusarium solani 62.04 4.00e-118 416.00
IUUC-Ggr-039985 Gaeumannomyces graminis 61.73 4.00e-118 416.00
IUUC-Gac-041316 Gasterosteus aculeatus 64.29 5.00e-122 429.00
IUUC-Hvu-047683 Hordeum vulgare 69.94 1.00e-134 472.00
IUUC-Kpa-049214 Komagataella pastoris 51.24 1.00e-86 311.00
IUUC-Lch-049634 Latimeria chalumnae 63.89 2.00e-122 431.00
IUUC-Mor-057107 Magnaporthe oryzae 61.73 2.00e-118 417.00
IUUC-Mpo-057487 Magnaporthe poae 61.42 1.00e-117 415.00
IUUC-Nfi-068344 Neosartorya fischeri 60.80 7.00e-116 409.00
IUUC-Ncr-068722 Neurospora crassa 61.11 2.00e-117 414.00
IUUC-Ont-072287 Oreochromis niloticus 65.74 2.00e-125 441.00
IUUC-Ola-086400 Oryzias latipes 65.43 6.00e-125 439.00
IUUC-Pno-095100 Phaeosphaeria nodorum 64.02 5.00e-82 296.00
IUUC-Pop-099345 Populus trichocarpa 85.58 9.00e-166 575.00
IUUC-Ppe-101743 Prunus persica 85.37 5.00e-165 572.00
IUUC-Sja-107971 Schizosaccharomyces japonicus 60.74 5.00e-113 399.00
IUUC-Ssl-108479 Sclerotinia sclerotiorum 61.42 1.00e-117 415.00
IUUC-Sly-111218 Solanum lycopersicum 82.77 2.00e-159 553.00
IUUC-Stu-112775 Solanum tuberosum 81.85 1.00e-159 554.00
IUUC-Tca-120951 Theobroma cacao 85.93 5.00e-168 582.00
IUUC-Tre-121961 Trichoderma reesei 61.42 2.00e-117 414.00
IUUC-Tvi-122447 Trichoderma virens 61.42 1.00e-117 415.00
IUUC-Tae-123560 Triticum aestivum 69.94 6.00e-135 472.00
IUUC-Tur-126335 Triticum urartu 73.91 2.00e-119 421.00
IUUC-Tme-127105 Tuber melanosporum 58.88 1.00e-108 385.00
IUUC-Vda-129923 Verticillium dahliae 62.04 2.00e-117 414.00
Created Date 25-Jun-2017

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