iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Tme-126900

Ensembl Protein ID

CAZ85695

UniProt Accession

D5GMF2; D5GMF2_TUBMM

Genbank Protein ID

CAZ85695.1

Protein Name

Ribosome biogenesis protein YTM1

Genbank Nucleotide ID

FN430354

Gene Name

YTM1; GSTUM_00010679001

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
GSTUM_00010679001	CAZ85695	CAZ85695

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.00e-27	93.7	357	390

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sd.tllvsGsdDgtikvWDlr 31
           gHt+ v +l+   ++ + +vs+s+Dgt+++WD+r
   Q: 357  GHTNAVVALSPnkNSeWQMVSASHDGTLRIWDVR 390
           899999999999955699**************97 PP

Organism

Tuber melanosporum

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MTSAEDSPMG GTDPQSTHQI QVKFTTRHPE IAVPTAPILV PANLKRYGLS QIINHLLDTS 60
TATPFEFLIN GSFLRTSIEK YLSDNGLSSE SVLTLEYVRA ILPPKFQAAF QHDDWVSSVS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TAAAAAATCA TTTTTCACTC CACCACAGTC TACAATGACT TCGGCGGAAG ATTCGCCAAT 60
GGGTGGAACT GACCCCCAAT CTACACATCA GATTCAAGTT AAATTCACAA CTAGACATCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0000790--C:nuclear chromatin
GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0051276--P:chromosome organization
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

tml:GSTUM_00010679001

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	32.28	7.00e-56	209.00
IUUC-Aml-001997	Ailuropoda melanoleuca	32.93	7.00e-46	176.00
IUUC-Atr-002544	Amborella trichopoda	30.54	7.00e-48	182.00
IUUC-Apl-003981	Anas platyrhynchos	31.40	7.00e-44	169.00
IUUC-Aca-004370	Anolis carolinensis	31.29	9.00e-55	205.00
IUUC-Aly-006455	Arabidopsis lyrata	30.16	2.00e-51	194.00
IUUC-Ath-006669	Arabidopsis thaliana	30.39	1.00e-48	184.00
IUUC-Ago-007864	Ashbya gossypii	44.52	8.00e-101	358.00
IUUC-Acl-008177	Aspergillus clavatus	47.52	6.00e-109	385.00
IUUC-Afl-008617	Aspergillus flavus	46.65	4.00e-107	379.00
IUUC-Afu-008752	Aspergillus fumigatus	45.73	2.00e-101	360.00
IUUC-Ani-009136	Aspergillus nidulans	47.48	1.00e-103	367.00
IUUC-Ang-009701	Aspergillus niger	46.19	1.00e-101	361.00
IUUC-Aor-009884	Aspergillus oryzae	46.65	1.00e-107	381.00
IUUC-Ate-010472	Aspergillus terreus	46.10	9.00e-64	234.00
IUUC-Ame-011432	Astyanax mexicanus	30.50	1.00e-52	198.00
IUUC-Bgr-012218	Blumeria graminis	46.07	7.00e-100	355.00
IUUC-Bta-012829	Bos taurus	31.68	8.00e-48	182.00
IUUC-Bci-013953	Botrytis cinerea	43.40	1.00e-104	371.00
IUUC-Bdi-014351	Brachypodium distachyon	31.99	1.00e-50	192.00
IUUC-Bol-016190	Brassica oleracea	31.89	7.00e-50	189.00
IUUC-Bra-016988	Brassica rapa	30.82	8.00e-51	192.00
IUUC-Cel-018569	Caenorhabditis elegans	25.34	2.00e-26	111.00
IUUC-Cja-019468	Callithrix jacchus	32.39	2.00e-47	181.00
IUUC-Cfa-020471	Canis familiaris	31.91	4.00e-46	176.00
IUUC-Cpo-022260	Cavia porcellus	32.62	2.00e-47	181.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	32.31	5.00e-47	179.00
IUUC-Csa-023989	Chlorocebus sabaeus	32.15	1.00e-46	178.00
IUUC-Cho-024426	Choloepus hoffmanni	29.23	6.00e-34	136.00
IUUC-Cin-025789	Ciona intestinalis	28.04	3.00e-40	157.00
IUUC-Cgl-026562	Colletotrichum gloeosporioides	46.91	2.00e-26	110.00
IUUC-Cne-027063	Cryptococcus neoformans	25.47	5.00e-31	127.00
IUUC-Dre-027907	Danio rerio	30.50	4.00e-52	196.00
IUUC-Dno-029225	Dasypus novemcinctus	32.86	7.00e-49	186.00
IUUC-Dor-031082	Dipodomys ordii	28.16	5.00e-31	126.00
IUUC-Dse-031308	Dothistroma septosporum	43.89	9.00e-99	352.00
IUUC-Dme-032189	Drosophila melanogaster	28.60	3.00e-47	180.00
IUUC-Ete-032247	Echinops telfairi	30.26	4.00e-43	167.00
IUUC-Eca-034285	Equus caballus	32.15	8.00e-48	182.00
IUUC-Eeu-035322	Erinaceus europaeus	29.95	6.00e-39	152.00
IUUC-Fca-036114	Felis catus	32.39	3.00e-48	184.00
IUUC-Fal-036891	Ficedula albicollis	30.41	2.00e-38	150.00
IUUC-Fox-037965	Fusarium oxysporum	42.76	2.00e-97	347.00
IUUC-Fso-038244	Fusarium solani	43.04	1.00e-96	345.00
IUUC-Gmo-039040	Gadus morhua	31.22	3.00e-54	203.00
IUUC-Ggr-040093	Gaeumannomyces graminis	38.56	2.00e-74	271.00
IUUC-Gga-040610	Gallus gallus	31.24	5.00e-50	189.00
IUUC-Gac-042117	Gasterosteus aculeatus	31.90	2.00e-54	204.00
IUUC-Gma-043146	Glycine max	33.79	2.00e-56	211.00
IUUC-Ggo-045179	Gorilla gorilla	32.15	1.00e-47	181.00
IUUC-Hsa-046114	Homo sapiens	32.15	6.00e-47	179.00
IUUC-Hvu-047331	Hordeum vulgare	30.77	5.00e-44	169.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	31.91	3.00e-48	184.00
IUUC-Kpa-049304	Komagataella pastoris	45.43	4.00e-108	382.00
IUUC-Lch-050655	Latimeria chalumnae	31.55	3.00e-40	156.00
IUUC-Lpe-051675	Leersia perrieri	32.43	2.00e-55	208.00
IUUC-Loc-052868	Lepisosteus oculatus	31.21	6.00e-54	202.00
IUUC-Lma-053258	Leptosphaeria maculans	42.16	2.00e-101	362.00
IUUC-Laf-053993	Loxodonta africana	32.39	5.00e-48	183.00
IUUC-Mcc-055128	Macaca mulatta	27.25	8.00e-34	135.00
IUUC-Meu-056501	Macropus eugenii	32.63	2.00e-41	161.00
IUUC-Mor-057114	Magnaporthe oryzae	42.37	1.00e-95	341.00
IUUC-Mpo-057463	Magnaporthe poae	46.41	3.00e-37	145.00
IUUC-Mtr-058367	Medicago truncatula	30.41	8.00e-47	179.00
IUUC-Mla-059107	Melampsora laricipopulina	28.87	1.00e-47	182.00
IUUC-Mga-059745	Meleagris gallopavo	31.10	3.00e-45	174.00
IUUC-Mvi-060362	Microbotryum violaceum	28.99	3.00e-45	174.00
IUUC-Mdo-062257	Monodelphis domestica	30.50	8.00e-49	185.00
IUUC-Mmu-063546	Mus musculus	33.10	1.00e-50	191.00
IUUC-Mac-065540	Musa acuminata	33.03	2.00e-53	201.00
IUUC-Mpu-066284	Mustela putorius furo	32.39	7.00e-49	186.00
IUUC-Mlu-067241	Myotis lucifugus	32.39	2.00e-48	184.00
IUUC-Nfi-068260	Neosartorya fischeri	46.44	1.00e-105	375.00
IUUC-Ncr-068719	Neurospora crassa	41.81	5.00e-93	332.00
IUUC-Nle-068981	Nomascus leucogenys	31.91	6.00e-46	176.00
IUUC-Opr-071218	Ochotona princeps	31.31	7.00e-47	179.00
IUUC-Ont-071646	Oreochromis niloticus	31.69	3.00e-50	190.00
IUUC-Oan-073453	Ornithorhynchus anatinus	30.50	2.00e-54	204.00
IUUC-Ocu-074008	Oryctolagus cuniculus	32.39	6.00e-49	186.00
IUUC-Oba-075712	Oryza barthii	28.25	4.00e-41	160.00
IUUC-Obr-076721	Oryza brachyantha	31.69	1.00e-54	205.00
IUUC-Ogl-077229	Oryza glaberrima	31.08	2.00e-53	200.00
IUUC-Ogu-078977	Oryza glumaepatula	28.47	1.00e-41	161.00
IUUC-Oin-079683	Oryza indica	31.15	9.00e-54	202.00
IUUC-Olo-080291	Oryza longistaminata	29.78	6.00e-31	125.00
IUUC-Ome-081834	Oryza meridionalis	31.49	7.00e-53	199.00
IUUC-Oni-082507	Oryza nivara	30.25	2.00e-48	184.00
IUUC-Opu-083396	Oryza punctata	30.63	7.00e-52	196.00
IUUC-Oru-085220	Oryza rufipogon	30.25	4.00e-48	183.00
IUUC-Osa-085767	Oryza sativa	31.15	9.00e-54	202.00
IUUC-Ola-087420	Oryzias latipes	31.21	1.00e-53	202.00
IUUC-Olu-087740	Ostreococcus lucimarinus	29.67	9.00e-38	149.00
IUUC-Oga-088264	Otolemur garnettii	32.39	4.00e-47	180.00
IUUC-Oar-089335	Ovis aries	31.68	1.00e-47	181.00
IUUC-Ptr-091320	Pan troglodytes	32.15	6.00e-47	179.00
IUUC-Pan-092833	Papio anubis	31.91	6.00e-47	179.00
IUUC-Psi-093504	Pelodiscus sinensis	30.73	6.00e-46	176.00
IUUC-Pma-094189	Petromyzon marinus	28.37	7.00e-43	166.00
IUUC-Pno-094929	Phaeosphaeria nodorum	42.24	4.00e-97	346.00
IUUC-Ppa-095429	Physcomitrella patens	34.34	3.00e-61	227.00
IUUC-Pfo-096337	Poecilia formosa	30.73	3.00e-54	203.00
IUUC-Pab-097571	Pongo abelii	31.91	1.00e-46	178.00
IUUC-Pop-099977	Populus trichocarpa	32.10	7.00e-53	199.00
IUUC-Pca-100394	Procavia capensis	30.49	9.00e-38	149.00
IUUC-Ppe-101848	Prunus persica	31.27	4.00e-51	193.00
IUUC-Pva-102921	Pteropus vampyrus	35.14	2.00e-25	108.00
IUUC-Pgr-103637	Puccinia graminis	28.60	4.00e-50	190.00
IUUC-Ptt-103781	Puccinia triticina	29.12	3.00e-50	190.00
IUUC-Pte-104135	Pyrenophora teres	44.37	1.00e-96	346.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	43.49	8.00e-100	355.00
IUUC-Rno-105114	Rattus norvegicus	32.39	1.00e-49	188.00
IUUC-Sce-106401	Saccharomyces cerevisiae	43.11	1.00e-99	354.00
IUUC-Sha-107122	Sarcophilus harrisii	30.12	2.00e-48	184.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	44.92	2.00e-105	373.00
IUUC-Spo-108134	Schizosaccharomyces pombe	42.06	5.00e-90	322.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	44.78	3.00e-110	389.00
IUUC-Smo-108720	Selaginella moellendorffii	31.31	6.00e-48	182.00
IUUC-Sit-110354	Setaria italica	32.43	2.00e-54	204.00
IUUC-Sly-111023	Solanum lycopersicum	29.14	5.00e-51	193.00
IUUC-Stu-112778	Solanum tuberosum	31.47	2.00e-51	194.00
IUUC-Sar-113596	Sorex araneus	27.96	6.00e-29	119.00
IUUC-Sbi-114193	Sorghum bicolor	32.28	8.00e-49	185.00
IUUC-Sre-115002	Sporisorium reilianum	27.20	1.00e-35	142.00
IUUC-Ssc-116066	Sus scrofa	32.15	2.00e-48	184.00
IUUC-Tgu-117048	Taeniopygia guttata	31.40	1.00e-43	168.00
IUUC-Tni-119820	Tetraodon nigroviridis	30.50	8.00e-50	189.00
IUUC-Tca-121605	Theobroma cacao	32.13	1.00e-55	208.00
IUUC-Tre-121947	Trichoderma reesei	43.04	1.00e-97	348.00
IUUC-Tvi-122481	Trichoderma virens	43.04	1.00e-97	348.00
IUUC-Tae-123504	Triticum aestivum	32.28	9.00e-56	208.00
IUUC-Tur-126586	Triticum urartu	31.70	6.00e-48	182.00
IUUC-Tbe-127736	Tupaia belangeri	29.43	8.00e-25	105.00
IUUC-Ttr-129041	Tursiops truncatus	27.42	1.00e-32	131.00
IUUC-Uma-129628	Ustilago maydis	28.43	4.00e-29	120.00
IUUC-Vpa-130260	Vicugna pacos	32.39	4.00e-49	186.00
IUUC-Vvi-131009	Vitis vinifera	30.70	3.00e-52	197.00
IUUC-Xtr-132083	Xenopus tropicalis	31.21	8.00e-50	189.00
IUUC-Xma-133094	Xiphophorus maculatus	30.50	1.00e-53	201.00
IUUC-Yli-134531	Yarrowia lipolytica	38.01	1.00e-77	281.00
IUUC-Zma-135509	Zea mays	32.51	3.00e-54	203.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence