iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007035

UUCD1 version

UUC-ArT-00621

Ensembl Protein ID

AT1G72220.1

UniProt Accession

Q8LFY8; Q9C7T3; ATL54_ARATH

Genbank Protein ID

AAG51786.1; AEE35290.1; AAK97702.1; AAN73300.1; AAM61130.1

Protein Name

RING-H2 finger protein ATL54; RING-type E3 ubiquitin transferase ATL54

Genbank Nucleotide ID

AC067754; CP002684; AY052232; BT002303; AY084564

Gene Name

ATL54; At1g72220; T9N14.22

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT1G72220	AT1G72220.1	AT1G72220.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	1.80e-09	38.9	177	219

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf..kdgplvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           C++Cl++f  ++ +++lp C+H+fh +C+  w       s + +CPlCr
   Q: 177  CPVCLNEFeeDESLRLLPkCNHAFHISCIDTW------LSSHTNCPLCR 219
           ********7655599999**************......**********8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MARKKHRKLF PTLASETNKT LDCSNGVCDP ICPYNCYPEP DYYTISPQLP PWSSSPQPSP 60
CPSPSISAVY LPSQDSSSSL DAISIITITG AVLAILLTGF FLVAKFFSDS VNRVNQGTYQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGACTCTTCA CCAATTAAAC AATTAGAAGA CGCTTCAACT TCTCTCACAG AACAAGTCAA 60
CAACTAAGAT GAGAAGAAAT TTTCATCTTT CTCTATGTTT AATATGAAAG AGAAACCCAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0808--Transferase
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

ath:AT1G72220

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006062	Arabidopsis lyrata	83.57	5.00e-179	619.00
IUUC-Acl-008067	Aspergillus clavatus	44.16	3.00e-12	66.60
IUUC-Bol-015703	Brassica oleracea	57.76	3.00e-116	410.00
IUUC-Bra-016736	Brassica rapa	61.14	2.00e-118	418.00
IUUC-Gma-044241	Glycine max	48.67	3.00e-51	195.00
IUUC-Mtr-058178	Medicago truncatula	41.84	2.00e-51	195.00
IUUC-Pop-099872	Populus trichocarpa	47.16	3.00e-51	194.00
IUUC-Ppe-101257	Prunus persica	73.91	5.00e-40	157.00
IUUC-Sly-111911	Solanum lycopersicum	40.15	5.00e-42	164.00
IUUC-Stu-112635	Solanum tuberosum	40.00	6.00e-43	167.00
IUUC-Tca-120964	Theobroma cacao	38.91	1.00e-46	179.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence