iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-113886

UUCD1 version

UUC-SoB-00784

Ensembl Protein ID

Sb04g007330.1

UniProt Accession

A0A194YPL3; A0A194YPL3_SORBI

Genbank Protein ID

KXG29770.1

Protein Name

Coatomer subunit beta'

Genbank Nucleotide ID

CM000763

Gene Name

SORBI_004G088500

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb04g007330	Sb04g007330.1	Sb04g007330.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.60e-34	115.3	183	224
UBD/Beta-Prp	2.80e-66	224.5	14	288

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf...sd.tllvsGsdDgtikvWDlrtgvllks 38
           gH+ +v+c+++    d ++l++GsdD t kvWD+ t  ++++
   Q: 183  GHSKGVNCVDYftgGDrPYLITGSDDQTAKVWDYQTKSCVQT 224
           8********966*9778*******************999986 PP

UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfsp 104
           +++++++v+ +p +++++++ ++g++ vw+++t+++++s++  + +v++ kf+ ++++ v g++D++i+v++++t + v ++++h+d++++++++p
   Q: 14   RSERVKSVDLHPTEPWILSSLYSGSVCVWNYQTQTMVKSFEVTDLPVRSAKFIARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHP 109
           5678999***************************************************************************************** PP
   S: 105  sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvysls..fdsngkelvs 197
           ++ +++s s+d  i++wd+++g++  ++++gh++ v+ v+++p++ n ++s+slDrt+++W+l + +   tl g h + v++++     ++++l++
   Q: 110  TQPFVLSSSDDMLIKLWDWDKGWVCTQIFEGHSHYVMQVTFNPKDtNTFASASLDRTIKIWSLGSPDPNFTLDG-HSKGVNCVDyfTGGDRPYLIT 204
           ***********************9999**********************************************9.*********7445566***** PP
   S: 198  gsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlv 281
           gs+d+t k+wd+qt++cv+tl+gh  nv+ v f+p+  ++++gs+Dg++r+W +++  l +tl++  ++v++  +++ +++v++
   Q: 205  GSDDQTAKVWDYQTKSCVQTLEGHAHNVSAVCFHPELPIIITGSEDGTVRMWHSTTYRLENTLNYGLERVWALGYMKGSRRVVI 288
           ***********************************************************************9998666666654 PP

Organism

Sorghum bicolor

Functional Description
(View)

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Protein Sequence
(Fasta)

MPLRLDIKRK LAQRSERVKS VDLHPTEPWI LSSLYSGSVC VWNYQTQTMV KSFEVTDLPV 60
RSAKFIARKQ WVVAGADDMF IRVYNYNTMD KVKVFEAHTD YIRCVAVHPT QPFVLSSSDD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAATCTCCTC CCCTCTCCCC GCGCGGCGCG CCTGCACCTC CCGGTCCGGC GAGAGGCCAC 60
CGCCCGCGCG GCCGCGCTCC TCACACTCCC ACCCGCCCCC TCGCTACGCA AGCCCTAGAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030663--C:COPI-coated vesicle membrane
GO:0000139--C:Golgi membrane
GO:0030117--C:membrane coat
GO:0005198--F:structural molecule activity
GO:0006886--P:intracellular protein transport
GO:0016192--P:vesicle-mediated transport

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Acl-008237	Aspergillus clavatus	53.41	0.00e+00	911.00
IUUC-Ani-009135	Aspergillus nidulans	54.66	0.00e+00	891.00
IUUC-Ang-009654	Aspergillus niger	56.76	0.00e+00	826.00
IUUC-Ate-010355	Aspergillus terreus	53.03	0.00e+00	887.00
IUUC-Csa-023383	Chlorocebus sabaeus	67.02	0.00e+00	847.00
IUUC-Cho-024454	Choloepus hoffmanni	60.11	0.00e+00	936.00
IUUC-Dse-031268	Dothistroma septosporum	52.20	0.00e+00	889.00
IUUC-Ete-033166	Echinops telfairi	59.64	0.00e+00	715.00
IUUC-Mla-058937	Melampsora laricipopulina	53.42	0.00e+00	893.00
IUUC-Olu-087655	Ostreococcus lucimarinus	66.75	0.00e+00	1142.00
IUUC-Spo-108299	Schizosaccharomyces pombe	47.16	0.00e+00	795.00
IUUC-Vda-129716	Verticillium dahliae	54.24	0.00e+00	912.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence