iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Kpa-049370

Ensembl Protein ID

CAY67565

UniProt Accession

C4QWE2; C4QWE2_KOMPG

Genbank Protein ID

CAY67565.1

Protein Name

Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA

Genbank Nucleotide ID

FN392319

Gene Name

PAS_chr1-1_0199

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PAS_chr1-1_0199	CAY67565	CAY67565

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.40e-16	57.3	159	187

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 6    vtclaf.sdtllvsGsdDgtikvWDlrtg 33
           v  l++ +d+ +vsG+ Dg i++W++ +g
   Q: 159  VLNLCWlNDKKIVSGCSDGRIRIWNYEEG 187
           56689*999****************8665 PP

Organism

Komagataella pastoris

Protein Sequence
(Fasta)

MDIHRCRFVK YKPRTVTSLA FSHFSSNGFA PKNLRLAVGK SNGNIEIWNP HKNFLLENVL 60
QGGKDRVIEG LVWSTYDDYP PRLFSIGGST VMTEWDIATG LPLNNYDCNS GITWSISINT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGATATTC ATCGTTGCAG ATTCGTTAAG TATAAGCCGC GGACAGTGAC GTCTTTGGCG 60
TTTTCTCACT TCTCCTCCAA TGGCTTTGCC CCAAAGAACT TAAGATTAGC AGTGGGAAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0030686--C:90S preribosome
GO:0072686--C:mitotic spindle
GO:0032040--C:small-subunit processome
GO:0034455--C:t-UTP complex
GO:0000462--P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0045943--P:positive regulation of transcription from RNA polymerase I promoter

KEGG

ppa:PAS_chr1-1_0199

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001161	Aegilops tauschii	23.21	5.00e-19	87.40
IUUC-Aml-001310	Ailuropoda melanoleuca	21.15	4.00e-35	140.00
IUUC-Atr-003076	Amborella trichopoda	27.69	1.00e-16	79.70
IUUC-Apl-003367	Anas platyrhynchos	25.93	2.00e-08	49.70
IUUC-Aca-004429	Anolis carolinensis	24.00	5.00e-24	102.00
IUUC-Aly-006271	Arabidopsis lyrata	22.59	1.00e-10	59.70
IUUC-Ath-007331	Arabidopsis thaliana	23.00	6.00e-13	67.40
IUUC-Ago-007843	Ashbya gossypii	39.17	3.00e-148	516.00
IUUC-Acl-008229	Aspergillus clavatus	33.33	2.00e-71	262.00
IUUC-Afl-008438	Aspergillus flavus	29.56	3.00e-76	277.00
IUUC-Afu-008910	Aspergillus fumigatus	31.42	2.00e-68	252.00
IUUC-Ani-009321	Aspergillus nidulans	31.36	5.00e-65	240.00
IUUC-Ang-009592	Aspergillus niger	33.13	8.00e-72	263.00
IUUC-Aor-010220	Aspergillus oryzae	29.56	3.00e-76	277.00
IUUC-Ate-010317	Aspergillus terreus	31.99	2.00e-68	251.00
IUUC-Ame-010957	Astyanax mexicanus	23.46	1.00e-37	149.00
IUUC-Bgr-012057	Blumeria graminis	33.46	2.00e-67	248.00
IUUC-Bta-012473	Bos taurus	22.34	2.00e-37	148.00
IUUC-Bdi-014203	Brachypodium distachyon	20.78	4.00e-19	88.20
IUUC-Bol-016177	Brassica oleracea	24.58	2.00e-17	83.60
IUUC-Bra-017482	Brassica rapa	25.22	5.00e-18	84.30
IUUC-Cja-019942	Callithrix jacchus	21.23	5.00e-34	137.00
IUUC-Cfa-020549	Canis familiaris	21.67	1.00e-30	125.00
IUUC-Cpo-022088	Cavia porcellus	21.14	5.00e-32	130.00
IUUC-Csa-023773	Chlorocebus sabaeus	20.96	4.00e-33	134.00
IUUC-Cho-024302	Choloepus hoffmanni	20.17	2.00e-18	85.10
IUUC-Cin-025384	Ciona intestinalis	24.37	2.00e-47	181.00
IUUC-Dre-027460	Danio rerio	24.01	1.00e-41	162.00
IUUC-Dno-029594	Dasypus novemcinctus	21.15	3.00e-31	127.00
IUUC-Dor-030564	Dipodomys ordii	27.03	1.00e-17	82.40
IUUC-Dse-031179	Dothistroma septosporum	26.93	8.00e-52	196.00
IUUC-Dme-031603	Drosophila melanogaster	22.27	7.00e-26	110.00
IUUC-Ete-032655	Echinops telfairi	20.00	2.00e-26	111.00
IUUC-Eca-033838	Equus caballus	21.45	6.00e-37	146.00
IUUC-Eeu-034548	Erinaceus europaeus	20.76	2.00e-27	115.00
IUUC-Fca-035715	Felis catus	21.28	3.00e-35	141.00
IUUC-Fal-037394	Ficedula albicollis	20.68	3.00e-22	98.20
IUUC-Gmo-039235	Gadus morhua	20.72	2.00e-27	115.00
IUUC-Ggr-040043	Gaeumannomyces graminis	27.39	5.00e-46	177.00
IUUC-Gga-041172	Gallus gallus	21.54	4.00e-29	120.00
IUUC-Gac-042466	Gasterosteus aculeatus	22.64	2.00e-37	148.00
IUUC-Gma-044129	Glycine max	27.83	2.00e-16	79.30
IUUC-Ggo-045416	Gorilla gorilla	20.68	2.00e-27	115.00
IUUC-Hsa-046115	Homo sapiens	21.61	6.00e-31	127.00
IUUC-Hvu-047229	Hordeum vulgare	21.77	4.00e-17	80.90
IUUC-Itr-048015	Ictidomys tridecemlineatus	21.92	4.00e-36	144.00
IUUC-Lch-050153	Latimeria chalumnae	25.53	4.00e-42	164.00
IUUC-Lpe-051220	Leersia perrieri	22.37	9.00e-21	93.60
IUUC-Loc-052617	Lepisosteus oculatus	23.52	4.00e-38	150.00
IUUC-Laf-053613	Loxodonta africana	21.15	2.00e-34	138.00
IUUC-Mcc-055707	Macaca mulatta	20.83	8.00e-31	126.00
IUUC-Meu-056800	Macropus eugenii	19.84	3.00e-12	65.10
IUUC-Mor-057245	Magnaporthe oryzae	28.60	2.00e-44	172.00
IUUC-Mpo-057446	Magnaporthe poae	25.65	5.00e-47	180.00
IUUC-Mtr-058748	Medicago truncatula	24.36	2.00e-16	79.30
IUUC-Mga-060018	Meleagris gallopavo	21.33	4.00e-29	120.00
IUUC-Mmr-061115	Microcebus murinus	21.69	1.00e-33	136.00
IUUC-Mdo-062235	Monodelphis domestica	22.35	2.00e-38	151.00
IUUC-Mmu-063158	Mus musculus	21.28	3.00e-33	134.00
IUUC-Mac-065380	Musa acuminata	25.33	1.00e-18	86.30
IUUC-Mpu-065805	Mustela putorius furo	21.42	2.00e-36	145.00
IUUC-Mlu-066951	Myotis lucifugus	20.79	7.00e-32	130.00
IUUC-Nfi-068295	Neosartorya fischeri	31.03	9.00e-66	243.00
IUUC-Ncr-068880	Neurospora crassa	27.81	7.00e-53	200.00
IUUC-Nle-069657	Nomascus leucogenys	21.29	2.00e-34	138.00
IUUC-Opr-070250	Ochotona princeps	21.28	3.00e-30	124.00
IUUC-Ont-072642	Oreochromis niloticus	23.12	1.00e-39	155.00
IUUC-Ocu-074741	Oryctolagus cuniculus	21.12	6.00e-34	136.00
IUUC-Oba-074974	Oryza barthii	20.73	5.00e-21	94.40
IUUC-Obr-076586	Oryza brachyantha	22.37	3.00e-19	88.20
IUUC-Ogl-077782	Oryza glaberrima	21.16	4.00e-21	94.70
IUUC-Ogu-078333	Oryza glumaepatula	22.73	4.00e-21	94.70
IUUC-Oin-079852	Oryza indica	21.16	2.00e-21	95.50
IUUC-Olo-080370	Oryza longistaminata	21.90	3.00e-20	91.30
IUUC-Ome-081442	Oryza meridionalis	20.54	1.00e-20	92.80
IUUC-Oni-082341	Oryza nivara	22.16	9.00e-21	93.60
IUUC-Opu-083824	Oryza punctata	21.70	9.00e-21	93.60
IUUC-Oru-084827	Oryza rufipogon	20.73	3.00e-21	95.10
IUUC-Osa-085742	Oryza sativa	21.16	1.00e-21	96.30
IUUC-Ola-086466	Oryzias latipes	26.93	1.00e-35	142.00
IUUC-Olu-087761	Ostreococcus lucimarinus	19.96	5.00e-19	87.40
IUUC-Oga-088721	Otolemur garnettii	21.89	8.00e-30	123.00
IUUC-Oar-089532	Ovis aries	22.19	6.00e-39	153.00
IUUC-Ptr-091604	Pan troglodytes	21.90	1.00e-34	139.00
IUUC-Pan-092060	Papio anubis	24.09	1.00e-25	108.00
IUUC-Psi-093070	Pelodiscus sinensis	22.59	2.00e-30	124.00
IUUC-Pma-094201	Petromyzon marinus	23.09	2.00e-34	137.00
IUUC-Pno-094924	Phaeosphaeria nodorum	23.63	6.00e-24	103.00
IUUC-Ppa-095599	Physcomitrella patens	25.75	2.00e-25	108.00
IUUC-Pfo-097207	Poecilia formosa	26.22	5.00e-37	147.00
IUUC-Pab-097746	Pongo abelii	21.76	1.00e-33	135.00
IUUC-Pop-099991	Populus trichocarpa	23.64	1.00e-17	83.20
IUUC-Pca-100562	Procavia capensis	19.56	1.00e-15	75.90
IUUC-Ppe-101747	Prunus persica	31.05	4.00e-16	77.80
IUUC-Pva-103054	Pteropus vampyrus	20.52	3.00e-32	130.00
IUUC-Pte-104064	Pyrenophora teres	31.69	3.00e-51	194.00
IUUC-Pyt-104595	Pyrenophora triticirepentis	30.08	2.00e-57	215.00
IUUC-Rno-105155	Rattus norvegicus	20.85	1.00e-31	129.00
IUUC-Sce-106369	Saccharomyces cerevisiae	39.82	1.00e-148	518.00
IUUC-Sha-107149	Sarcophilus harrisii	21.96	5.00e-37	147.00
IUUC-Sja-107777	Schizosaccharomyces japonicus	33.99	1.00e-115	408.00
IUUC-Spo-108372	Schizosaccharomyces pombe	33.01	8.00e-107	379.00
IUUC-Ssl-108650	Sclerotinia sclerotiorum	30.16	1.00e-65	242.00
IUUC-Smo-108851	Selaginella moellendorffii	26.16	7.00e-21	93.60
IUUC-Sit-110454	Setaria italica	24.87	4.00e-18	84.30
IUUC-Sly-111875	Solanum lycopersicum	28.87	2.00e-15	75.50
IUUC-Stu-112275	Solanum tuberosum	24.92	3.00e-16	78.20
IUUC-Sar-113254	Sorex araneus	26.78	2.00e-17	82.00
IUUC-Sbi-114624	Sorghum bicolor	29.80	4.00e-17	81.30
IUUC-Sre-114985	Sporisorium reilianum	23.83	2.00e-14	72.80
IUUC-Tgu-117407	Taeniopygia guttata	24.27	3.00e-20	90.50
IUUC-Tru-118733	Takifugu rubripes	25.57	4.00e-36	144.00
IUUC-Tsy-119213	Tarsius syrichta	23.36	2.00e-17	82.00
IUUC-Tni-120894	Tetraodon nigroviridis	26.80	9.00e-28	115.00
IUUC-Tca-121606	Theobroma cacao	31.18	2.00e-16	78.60
IUUC-Tre-121958	Trichoderma reesei	26.91	4.00e-53	201.00
IUUC-Tvi-122290	Trichoderma virens	27.03	6.00e-53	200.00
IUUC-Tae-125538	Triticum aestivum	22.80	5.00e-19	87.80
IUUC-Tme-126995	Tuber melanosporum	30.61	4.00e-65	240.00
IUUC-Tbe-127605	Tupaia belangeri	26.47	7.00e-09	53.50
IUUC-Ttr-128720	Tursiops truncatus	20.90	8.00e-33	133.00
IUUC-Uma-129564	Ustilago maydis	24.64	5.00e-21	94.70
IUUC-Vpa-130412	Vicugna pacos	25.29	2.00e-22	99.00
IUUC-Vvi-131256	Vitis vinifera	31.52	4.00e-17	81.30
IUUC-Xtr-131828	Xenopus tropicalis	20.82	1.00e-26	112.00
IUUC-Xma-133394	Xiphophorus maculatus	27.43	5.00e-36	143.00
IUUC-Yli-134565	Yarrowia lipolytica	35.24	3.00e-110	390.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence