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Tag Content
iUUCD ID IUUC-Sha-107595
Ensembl Protein ID ENSSHAP00000004723.1
UniProt Accession G3VNG8; G3VNG8_SARHA
Genbank Protein ID ENSSHAP00000004723
Protein Name Uncharacterized protein
Genbank Nucleotide ID AEFK01005617
Gene Name LDB1
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSSHAG00000004146.1 ENSSHAT00000004771.1 ENSSHAP00000004723.1
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
E3 activity/RING/U-box 62.39 4.00e-123 438.00 IUUC-Dme-031667
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Sarcophilus harrisii
Protein Sequence
(Fasta)
LPCGCSCPGC SSKSFKLYSP KEPPNGNAFP PFHPGTMLDR DVGPTPMYPP TYLEPGIGRH 60
TPYGNQTDYR IFELNKRLQN WTEECDNLWW DAFTTEFFED DAMLTITFCL EDGPKRYTIG 120
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Protein Fasta Sequence



>IUUC-Sha-107595|E3,U-box|Sarcophilus harrisii
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Nucleotide Sequence
(Fasta)
CTGCCCTGTG GGTGTAGGGG AGTAATTGGG ACTGATAAGA GAGAGGCCGT TGGGGGGAGG 60
GGGAAGCACA ACTGTTTATC TGGTGGGTGG AGACTGGAGA ATTTCCCCTT TGCTGCCCAG 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Sha-107595|E3,U-box|Sarcophilus harrisii
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR030167--LDB1
IPR029005--LIM-bd/SEUSS

Gene Ontology

GO:0031252--C:cell leading edge
GO:0000790--C:nuclear chromatin
GO:0005667--C:transcription factor complex
GO:0003682--F:chromatin binding
GO:0001158--F:enhancer sequence-specific DNA binding
GO:0000989--F:transcription factor activity, transcription factor binding
GO:0009948--P:anterior/posterior axis specification
GO:0022607--P:cellular component assembly
GO:0021702--P:cerebellar Purkinje cell differentiation
GO:0010669--P:epithelial structure maintenance
GO:0001702--P:gastrulation with mouth forming second
GO:0001942--P:hair follicle development
GO:0043973--P:histone H3-K4 acetylation
GO:0045647--P:negative regulation of erythrocyte differentiation
GO:0045892--P:negative regulation of transcription, DNA-templated
GO:0045785--P:positive regulation of cell adhesion
GO:0046985--P:positive regulation of hemoglobin biosynthetic process
GO:0045944--P:positive regulation of transcription from RNA polymerase II promoter
GO:0030334--P:regulation of cell migration
GO:0032784--P:regulation of DNA-templated transcription, elongation
GO:0051893--P:regulation of focal adhesion assembly
GO:0043549--P:regulation of kinase activity
GO:0035019--P:somatic stem cell population maintenance
GO:0006366--P:transcription from RNA polymerase II promoter
GO:0000972--P:transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0016055--P:Wnt signaling pathway

Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000177 Aegilops tauschii 25.90 3.00e-04 40.80
IUUC-Aml-002031 Ailuropoda melanoleuca 97.34 0.00e+00 753.00
IUUC-Atr-003083 Amborella trichopoda 22.79 7.00e-04 39.70
IUUC-Apl-004210 Anas platyrhynchos 95.78 8.00e-176 608.00
IUUC-Aca-005241 Anolis carolinensis 97.32 0.00e+00 758.00
IUUC-Aly-006204 Arabidopsis lyrata 22.87 6.00e-06 46.20
IUUC-Ath-007339 Arabidopsis thaliana 22.87 7.00e-06 46.20
IUUC-Acl-008255 Aspergillus clavatus 21.52 2.00e-07 50.80
IUUC-Afu-009010 Aspergillus fumigatus 20.64 9.00e-07 48.90
IUUC-Ate-010596 Aspergillus terreus 22.78 5.00e-05 43.10
IUUC-Ame-010910 Astyanax mexicanus 94.12 0.00e+00 727.00
IUUC-Bgr-012180 Blumeria graminis 21.65 2.00e-05 44.70
IUUC-Bta-012596 Bos taurus 73.39 2.00e-152 531.00
IUUC-Bci-013927 Botrytis cinerea 25.33 4.00e-07 50.10
IUUC-Bol-015721 Brassica oleracea 23.44 1.00e-06 48.50
IUUC-Bra-017183 Brassica rapa 23.44 1.00e-06 48.10
IUUC-Cel-018189 Caenorhabditis elegans 34.04 7.00e-30 125.00
IUUC-Cja-019586 Callithrix jacchus 75.42 1.00e-157 548.00
IUUC-Cfa-021188 Canis familiaris 97.34 0.00e+00 751.00
IUUC-Cpo-022350 Cavia porcellus 98.76 0.00e+00 746.00
IUUC-Csa-023816 Chlorocebus sabaeus 98.05 0.00e+00 763.00
IUUC-Cho-024958 Choloepus hoffmanni 59.69 9.00e-63 233.00
IUUC-Cin-025721 Ciona intestinalis 50.48 3.00e-87 315.00
IUUC-Csv-026065 Ciona savignyi 51.44 6.00e-92 330.00
IUUC-Dre-027356 Danio rerio 68.98 3.00e-148 518.00
IUUC-Dno-029918 Dasypus novemcinctus 97.66 0.00e+00 733.00
IUUC-Dor-030634 Dipodomys ordii 99.20 0.00e+00 696.00
IUUC-Dse-031245 Dothistroma septosporum 24.34 1.00e-04 41.60
IUUC-Dme-031667 Drosophila melanogaster 62.21 1.00e-121 430.00
IUUC-Ete-032246 Echinops telfairi 72.83 9.00e-153 532.00
IUUC-Eca-034015 Equus caballus 74.86 7.00e-158 549.00
IUUC-Eeu-034902 Erinaceus europaeus 99.20 0.00e+00 696.00
IUUC-Fca-035903 Felis catus 98.28 0.00e+00 749.00
IUUC-Fal-037407 Ficedula albicollis 76.19 5.00e-151 526.00
IUUC-Gmo-039466 Gadus morhua 90.77 0.00e+00 740.00
IUUC-Ggr-040030 Gaeumannomyces graminis 25.93 4.00e-03 37.00
IUUC-Gga-040214 Gallus gallus 96.84 0.00e+00 749.00
IUUC-Gac-042214 Gasterosteus aculeatus 89.98 0.00e+00 742.00
IUUC-Gma-042794 Glycine max 23.90 5.00e-06 46.60
IUUC-Ggo-044988 Gorilla gorilla 74.58 3.00e-158 551.00
IUUC-Hsa-046092 Homo sapiens 74.30 7.00e-155 539.00
IUUC-Itr-047934 Ictidomys tridecemlineatus 98.30 0.00e+00 765.00
IUUC-Lch-049895 Latimeria chalumnae 81.05 1.00e-99 355.00
IUUC-Lpe-050806 Leersia perrieri 23.97 2.00e-05 44.70
IUUC-Loc-052845 Lepisosteus oculatus 94.89 0.00e+00 753.00
IUUC-Lma-053090 Leptosphaeria maculans 24.41 4.00e-05 43.50
IUUC-Laf-054538 Loxodonta africana 98.59 0.00e+00 643.00
IUUC-Mcc-055116 Macaca mulatta 69.76 5.00e-117 413.00
IUUC-Meu-056777 Macropus eugenii 95.20 0.00e+00 644.00
IUUC-Mpo-057376 Magnaporthe poae 21.47 9.00e-04 39.30
IUUC-Mtr-058142 Medicago truncatula 23.90 7.00e-06 46.20
IUUC-Mga-059716 Meleagris gallopavo 75.63 4.00e-150 523.00
IUUC-Mmr-060649 Microcebus murinus 74.30 7.00e-157 546.00
IUUC-Mdo-062535 Monodelphis domestica 74.86 8.00e-155 539.00
IUUC-Mmu-064036 Mus musculus 73.18 3.00e-155 541.00
IUUC-Mac-065338 Musa acuminata 22.54 1.00e-04 42.40
IUUC-Mpu-065719 Mustela putorius furo 98.30 0.00e+00 765.00
IUUC-Mlu-067219 Myotis lucifugus 96.60 0.00e+00 740.00
IUUC-Nfi-068308 Neosartorya fischeri 20.18 2.00e-06 47.40
IUUC-Ncr-068691 Neurospora crassa 21.74 2.00e-05 44.30
IUUC-Nle-068983 Nomascus leucogenys 75.42 3.00e-158 550.00
IUUC-Opr-070467 Ochotona princeps 99.20 0.00e+00 696.00
IUUC-Ont-071566 Oreochromis niloticus 92.86 0.00e+00 751.00
IUUC-Oan-073368 Ornithorhynchus anatinus 98.67 0.00e+00 681.00
IUUC-Ocu-074854 Oryctolagus cuniculus 74.58 6.00e-159 553.00
IUUC-Ome-081687 Oryza meridionalis 24.64 5.00e-04 39.30
IUUC-Ola-086364 Oryzias latipes 92.63 0.00e+00 747.00
IUUC-Oga-088235 Otolemur garnettii 73.46 9.00e-154 535.00
IUUC-Oar-089547 Ovis aries 97.34 0.00e+00 752.00
IUUC-Ptr-091423 Pan troglodytes 74.86 9.00e-158 549.00
IUUC-Pan-092378 Papio anubis 98.93 0.00e+00 694.00
IUUC-Psi-093638 Pelodiscus sinensis 74.86 3.00e-152 531.00
IUUC-Pma-094384 Petromyzon marinus 65.36 3.00e-50 190.00
IUUC-Pno-095027 Phaeosphaeria nodorum 23.44 6.00e-05 42.70
IUUC-Pfo-096031 Poecilia formosa 90.40 0.00e+00 690.00
IUUC-Pab-097886 Pongo abelii 75.42 3.00e-158 550.00
IUUC-Pop-099430 Populus trichocarpa 24.26 3.00e-05 44.30
IUUC-Pca-101138 Procavia capensis 99.20 0.00e+00 696.00
IUUC-Ppe-101293 Prunus persica 28.57 9.00e-06 45.40
IUUC-Pva-103215 Pteropus vampyrus 74.86 2.00e-158 551.00
IUUC-Pte-104238 Pyrenophora teres 25.98 6.00e-05 42.40
IUUC-Rno-105968 Rattus norvegicus 73.46 2.00e-155 541.00
IUUC-Ssl-108527 Sclerotinia sclerotiorum 26.14 1.00e-06 48.50
IUUC-Smo-109552 Selaginella moellendorffii 19.34 3.00e-04 40.80
IUUC-Sly-110873 Solanum lycopersicum 30.11 4.00e-05 43.90
IUUC-Stu-112586 Solanum tuberosum 19.80 4.00e-03 36.60
IUUC-Sar-113076 Sorex araneus 72.10 3.00e-101 361.00
IUUC-Sre-115143 Sporisorium reilianum 17.96 3.00e-03 37.40
IUUC-Ssc-115755 Sus scrofa 98.67 0.00e+00 687.00
IUUC-Tgu-117326 Taeniopygia guttata 75.91 2.00e-150 525.00
IUUC-Tru-117858 Takifugu rubripes 73.19 6.00e-156 543.00
IUUC-Tsy-119296 Tarsius syrichta 68.16 2.00e-138 484.00
IUUC-Tni-119822 Tetraodon nigroviridis 88.98 0.00e+00 627.00
IUUC-Tca-120935 Theobroma cacao 28.57 7.00e-06 46.20
IUUC-Tbe-127366 Tupaia belangeri 97.60 0.00e+00 671.00
IUUC-Ttr-128484 Tursiops truncatus 74.77 7.00e-147 513.00
IUUC-Vpa-130304 Vicugna pacos 71.99 4.00e-117 413.00
IUUC-Vvi-131560 Vitis vinifera 28.42 2.00e-05 44.70
IUUC-Xtr-132062 Xenopus tropicalis 97.07 0.00e+00 676.00
IUUC-Xma-134288 Xiphophorus maculatus 93.14 0.00e+00 760.00
IUUC-Yli-134374 Yarrowia lipolytica 21.05 5.00e-06 46.20
IUUC-Zma-135310 Zea mays 22.10 7.00e-04 39.30
Created Date 25-Jun-2017

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