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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Ath-007559
UUCD1 version UUC-ArT-00141
Ensembl Protein ID AT5G05130.1
UniProt Accession Q9FF61; F4JZ78; Q8RWB4; Q8RWC7; SM3L1_ARATH
Genbank Protein ID BAB11535.1; AED90832.2; AAM13184.1; AAM13210.1; AAP68241.1
Protein Name Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1
Genbank Nucleotide ID AB005245; CP002688; AY093185; AY093211; BT008802
Gene Name At5g05130; MUG13.1
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT5G05130 AT5G05130.1 AT5G05130.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
Mentha
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 activity/RING/RING 5.50e-06 27.7 635 674
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 activity/RING/RING
   S: 1    CaiCledfkdgplvlpCgHvfhadCl.qkwpglknssskefrCPlCr 46
           C+iC +++ +  ++++C H+f++ C+ q +      ++ + +CPlCr
   Q: 635  CPICISPPTN-IIITRCAHIFCRACIlQTL------QRSKPLCPLCR 674
           ********99.**************97777......999999****8 PP
   
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description


     Possesses intrinsic ATP-dependent nucleosome-remodeling activity. This activity may be required for transcriptional activation or repression of specific target promoters (By similarity).
 Possesses intrinsic ATP-dependent nucleosome-remodeling activity. This activity may be required for transcriptional activation or repression of specific target promoters (By similarity).
Protein Sequence
(Fasta)
MRVLKYFRAP SSLRHRSSPM AQFLRRFSSS PMANEDEFQS PVEPSQQQSQ DCVSESYLIG 60
FVIANIVGLK YYSGRINGRE MVGLVREPLN VYDNNAIRVL NTRSEQVGHI ERTVAAVLAP 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Ath-007559|E3,RING|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CCAATATAAA AAAAAAAACC ACTCTTTCGA AAGGATGCGG GTTTTGAAAT ACTTTCGAGC 60
TCCTTCTTCT CTCCGTCATC GTTCCTCTCC CATGGCTCAG TTTCTTCGAC GCTTCTCTTC 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ath-007559|E3,RING|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0010--Activator
KW-0067--ATP-binding
KW-0156--Chromatin regulator
KW-0181--Complete proteome
KW-0347--Helicase
KW-0378--Hydrolase
KW-0479--Metal-binding
KW-0547--Nucleotide-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0804--Transcription
KW-0862--Zinc
KW-0863--Zinc-finger
Interpro

IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR014905--HIRAN
IPR027417--P-loop_NTPase
IPR000330--SNF2_N
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS
PROSITE

PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
PS00518--ZF_RING_1
PS50089--ZF_RING_2
Pfam

PF00271--Helicase_C
PF08797--HIRAN
PF00176--SNF2_N
SMART

SM00487--DEXDc
SM00490--HELICc
SM00910--HIRAN
SM00184--RING
Gene Ontology

GO:0005634--C:nucleus
GO:0005524--F:ATP binding
GO:0004386--F:helicase activity
GO:0003676--F:nucleic acid binding
GO:0008270--F:zinc ion binding
GO:0016569--P:covalent chromatin modification
GO:0006351--P:transcription, DNA-templated
KEGG ath:AT5G05130
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000819 Aegilops tauschii 51.18 1.00e-127 449.00
IUUC-Aml-001237 Ailuropoda melanoleuca 42.59 4.00e-113 402.00
IUUC-Aca-004994 Anolis carolinensis 42.24 2.00e-119 423.00
IUUC-Aly-005898 Arabidopsis lyrata 95.59 0.00e+00 1605.00
IUUC-Acl-008053 Aspergillus clavatus 31.00 5.00e-108 385.00
IUUC-Afl-008697 Aspergillus flavus 33.24 1.00e-95 344.00
IUUC-Afu-008767 Aspergillus fumigatus 33.82 7.00e-99 354.00
IUUC-Ani-009435 Aspergillus nidulans 37.13 4.00e-88 318.00
IUUC-Ang-009635 Aspergillus niger 32.64 7.00e-112 397.00
IUUC-Aor-010130 Aspergillus oryzae 33.95 3.00e-98 352.00
IUUC-Ame-011743 Astyanax mexicanus 38.76 9.00e-107 380.00
IUUC-Bta-013391 Bos taurus 41.75 3.00e-121 429.00
IUUC-Bci-013956 Botrytis cinerea 30.32 3.00e-98 352.00
IUUC-Bdi-014267 Brachypodium distachyon 53.62 0.00e+00 866.00
IUUC-Bol-016075 Brassica oleracea 84.01 0.00e+00 1402.00
IUUC-Bra-017057 Brassica rapa 83.59 0.00e+00 1372.00
IUUC-Cja-019685 Callithrix jacchus 41.05 4.00e-119 422.00
IUUC-Cfa-020485 Canis familiaris 42.59 5.00e-113 401.00
IUUC-Cpo-021361 Cavia porcellus 42.20 1.00e-116 412.00
IUUC-Csa-023894 Chlorocebus sabaeus 41.23 6.00e-119 421.00
IUUC-Cho-024891 Choloepus hoffmanni 39.58 7.00e-76 278.00
IUUC-Cne-026829 Cryptococcus neoformans 30.54 2.00e-106 379.00
IUUC-Dre-027867 Danio rerio 40.00 4.00e-120 425.00
IUUC-Dno-029517 Dasypus novemcinctus 42.04 4.00e-114 405.00
IUUC-Ete-032421 Echinops telfairi 36.01 2.00e-86 313.00
IUUC-Eca-034058 Equus caballus 41.40 4.00e-110 392.00
IUUC-Fca-035390 Felis catus 42.59 4.00e-113 402.00
IUUC-Fso-038411 Fusarium solani 35.38 1.00e-77 283.00
IUUC-Gmo-038544 Gadus morhua 41.80 6.00e-120 424.00
IUUC-Gac-042401 Gasterosteus aculeatus 40.44 9.00e-119 420.00
IUUC-Ggo-045628 Gorilla gorilla 41.05 4.00e-119 422.00
IUUC-Hsa-045930 Homo sapiens 41.05 9.00e-119 421.00
IUUC-Itr-048493 Ictidomys tridecemlineatus 42.51 1.00e-118 420.00
IUUC-Lch-050617 Latimeria chalumnae 42.25 4.00e-123 435.00
IUUC-Lpe-051724 Leersia perrieri 51.72 0.00e+00 816.00
IUUC-Loc-052785 Lepisosteus oculatus 40.78 3.00e-123 436.00
IUUC-Laf-054309 Loxodonta africana 40.50 6.00e-115 408.00
IUUC-Mcc-055493 Macaca mulatta 41.11 3.00e-118 419.00
IUUC-Meu-056270 Macropus eugenii 39.96 5.00e-103 368.00
IUUC-Mtr-058172 Medicago truncatula 57.78 0.00e+00 959.00
IUUC-Mvi-060365 Microbotryum violaceum 33.50 2.00e-81 296.00
IUUC-Mmr-061043 Microcebus murinus 42.25 2.00e-111 396.00
IUUC-Mdo-062919 Monodelphis domestica 42.62 3.00e-110 392.00
IUUC-Mmu-064338 Mus musculus 42.22 5.00e-121 428.00
IUUC-Mpu-066781 Mustela putorius furo 42.59 4.00e-113 402.00
IUUC-Mlu-068076 Myotis lucifugus 40.31 4.00e-116 412.00
IUUC-Nfi-068386 Neosartorya fischeri 34.21 2.00e-98 353.00
IUUC-Ncr-068858 Neurospora crassa 31.93 7.00e-116 411.00
IUUC-Nle-069947 Nomascus leucogenys 41.23 3.00e-119 422.00
IUUC-Opr-070388 Ochotona princeps 44.32 8.00e-59 221.00
IUUC-Ont-071782 Oreochromis niloticus 41.85 3.00e-117 415.00
IUUC-Oan-073331 Ornithorhynchus anatinus 42.39 6.00e-113 401.00
IUUC-Ocu-074705 Oryctolagus cuniculus 43.04 4.00e-121 428.00
IUUC-Oba-075881 Oryza barthii 52.49 0.00e+00 836.00
IUUC-Obr-076344 Oryza brachyantha 55.11 0.00e+00 688.00
IUUC-Ogl-076957 Oryza glaberrima 52.49 0.00e+00 836.00
IUUC-Ogu-078648 Oryza glumaepatula 51.66 0.00e+00 792.00
IUUC-Oin-079449 Oryza indica 52.61 0.00e+00 817.00
IUUC-Olo-080721 Oryza longistaminata 55.11 0.00e+00 698.00
IUUC-Ome-081579 Oryza meridionalis 52.11 0.00e+00 816.00
IUUC-Oni-083054 Oryza nivara 52.61 0.00e+00 817.00
IUUC-Opu-083706 Oryza punctata 53.59 0.00e+00 845.00
IUUC-Oru-085259 Oryza rufipogon 52.61 0.00e+00 816.00
IUUC-Osa-085568 Oryza sativa 52.64 0.00e+00 776.00
IUUC-Ola-086830 Oryzias latipes 38.94 1.00e-108 387.00
IUUC-Oga-088120 Otolemur garnettii 42.78 1.00e-107 383.00
IUUC-Oar-089293 Ovis aries 42.59 2.00e-120 426.00
IUUC-Ptr-091418 Pan troglodytes 41.05 1.00e-118 420.00
IUUC-Pan-092579 Papio anubis 39.64 6.00e-63 234.00
IUUC-Psi-093626 Pelodiscus sinensis 43.85 4.00e-120 425.00
IUUC-Pno-094841 Phaeosphaeria nodorum 35.20 4.00e-92 332.00
IUUC-Ppa-095291 Physcomitrella patens 45.30 0.00e+00 714.00
IUUC-Pfo-096540 Poecilia formosa 41.11 3.00e-117 415.00
IUUC-Pab-098010 Pongo abelii 41.05 1.00e-118 420.00
IUUC-Pop-099141 Populus trichocarpa 46.48 0.00e+00 637.00
IUUC-Pca-100648 Procavia capensis 39.75 9.00e-116 410.00
IUUC-Ppe-102077 Prunus persica 58.82 0.00e+00 900.00
IUUC-Pva-102896 Pteropus vampyrus 43.93 9.00e-100 357.00
IUUC-Rno-106130 Rattus norvegicus 42.24 2.00e-121 430.00
IUUC-Sha-107221 Sarcophilus harrisii 42.80 1.00e-110 394.00
IUUC-Ssl-108383 Sclerotinia sclerotiorum 29.35 3.00e-97 349.00
IUUC-Smo-109465 Selaginella moellendorffii 43.64 0.00e+00 692.00
IUUC-Sit-109770 Setaria italica 53.64 0.00e+00 853.00
IUUC-Sar-113719 Sorex araneus 41.93 1.00e-125 443.00
IUUC-Ssc-116186 Sus scrofa 42.41 5.00e-120 425.00
IUUC-Tru-117768 Takifugu rubripes 39.63 8.00e-107 380.00
IUUC-Tsy-118957 Tarsius syrichta 42.80 3.00e-113 402.00
IUUC-Tni-120618 Tetraodon nigroviridis 40.52 3.00e-118 419.00
IUUC-Tre-122007 Trichoderma reesei 32.73 3.00e-108 385.00
IUUC-Tvi-122492 Trichoderma virens 32.88 3.00e-112 399.00
IUUC-Tae-125897 Triticum aestivum 53.92 0.00e+00 839.00
IUUC-Tur-125973 Triticum urartu 51.06 3.00e-129 455.00
IUUC-Ttr-128243 Tursiops truncatus 40.40 8.00e-62 231.00
IUUC-Vda-129933 Verticillium dahliae 32.12 2.00e-83 303.00
IUUC-Vpa-130672 Vicugna pacos 41.93 3.00e-117 416.00
IUUC-Vvi-131204 Vitis vinifera 64.04 0.00e+00 1133.00
IUUC-Xtr-132730 Xenopus tropicalis 43.58 3.00e-127 449.00
IUUC-Xma-133384 Xiphophorus maculatus 42.01 2.00e-122 433.00
IUUC-Zma-134966 Zea mays 54.48 0.00e+00 872.00
Created Date 25-Jun-2017

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