iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ani-009136

Ensembl Protein ID

CADANIAP00005982

UniProt Accession

Q5B4R1; C8V8H1; YTM1_EMENI

Genbank Protein ID

EAA60234.1; CBF77455.1

Protein Name

Ribosome biogenesis protein ytm1

Genbank Nucleotide ID

AACD01000077; BN001303

Gene Name

ANIA_04469; ytm1; AN4469

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
CADANIAG00005982	CADANIAT00005982	CADANIAP00005982

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.80e-28	95.9	380	414

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclafsdtl....lvsGsdDgtikvWDlrt 32
           gHt+ v +la  d++    l+sGs+Dgt+++WDlr 
   Q: 380  GHTNAVVSLAR-DPHsiygLISGSHDGTCRIWDLRA 414
           78999999886.44445679*************986 PP

Organism

Aspergillus nidulans

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MDTSQVSVSS QAAQRQVRVQ LTSKQEDIAL PDNTGPILVP TGLKRYALST LVNNLLGNDK 60
PIPFEFLING SFLRTSIDEY LTANGISAET TLEIEYVRAL IPPLHIASFE HDDWVSSIDV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GATAATCTTC CCTGAACTCA CGGTTGGAAT ATGGACACCA GCCAAGTTTC TGTCTCATCG 60
CAGGCCGCTC AGCGGCAAGT GCGCGTGCAG CTCACCAGTA AACAAGAGGA TATTGCCTTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0000790--C:nuclear chromatin
GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0051276--P:chromosome organization
GO:0000460--P:maturation of 5.8S rRNA
GO:0000470--P:maturation of LSU-rRNA

KEGG

ani:AN4469.2

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	31.83	1.00e-45	175.00
IUUC-Aml-001997	Ailuropoda melanoleuca	30.13	1.00e-37	149.00
IUUC-Atr-002544	Amborella trichopoda	29.78	8.00e-41	159.00
IUUC-Apl-003981	Anas platyrhynchos	31.04	3.00e-40	157.00
IUUC-Aca-004370	Anolis carolinensis	30.33	8.00e-44	169.00
IUUC-Aly-006455	Arabidopsis lyrata	31.70	9.00e-46	176.00
IUUC-Ath-006669	Arabidopsis thaliana	31.31	4.00e-42	163.00
IUUC-Ago-007864	Ashbya gossypii	43.27	6.00e-101	359.00
IUUC-Acl-008177	Aspergillus clavatus	84.60	0.00e+00	786.00
IUUC-Afl-008617	Aspergillus flavus	84.36	0.00e+00	749.00
IUUC-Afu-008752	Aspergillus fumigatus	85.38	0.00e+00	737.00
IUUC-Ang-009701	Aspergillus niger	84.76	0.00e+00	738.00
IUUC-Aor-009884	Aspergillus oryzae	84.78	0.00e+00	753.00
IUUC-Ate-010472	Aspergillus terreus	85.20	1.00e-144	503.00
IUUC-Ame-011432	Astyanax mexicanus	28.12	4.00e-44	170.00
IUUC-Bgr-012218	Blumeria graminis	57.36	8.00e-143	498.00
IUUC-Bta-012829	Bos taurus	29.14	5.00e-38	150.00
IUUC-Bci-013953	Botrytis cinerea	57.53	3.00e-153	532.00
IUUC-Bdi-014351	Brachypodium distachyon	31.28	8.00e-42	162.00
IUUC-Bol-016514	Brassica oleracea	30.84	7.00e-44	169.00
IUUC-Bra-016988	Brassica rapa	31.08	1.00e-44	172.00
IUUC-Cel-018569	Caenorhabditis elegans	25.06	9.00e-24	102.00
IUUC-Cja-019468	Callithrix jacchus	29.66	3.00e-38	150.00
IUUC-Cfa-020471	Canis familiaris	29.27	6.00e-35	139.00
IUUC-Cpo-022260	Cavia porcellus	29.66	7.00e-37	146.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	34.39	2.00e-48	184.00
IUUC-Csa-023989	Chlorocebus sabaeus	29.90	1.00e-37	148.00
IUUC-Cho-024426	Choloepus hoffmanni	27.42	2.00e-27	114.00
IUUC-Cin-025789	Ciona intestinalis	26.63	2.00e-34	137.00
IUUC-Cgl-026562	Colletotrichum gloeosporioides	51.87	2.00e-35	140.00
IUUC-Cne-027063	Cryptococcus neoformans	28.32	2.00e-38	151.00
IUUC-Dre-027907	Danio rerio	29.31	1.00e-44	171.00
IUUC-Dno-029225	Dasypus novemcinctus	29.41	5.00e-38	150.00
IUUC-Dor-031082	Dipodomys ordii	27.99	5.00e-17	80.50
IUUC-Dse-031308	Dothistroma septosporum	52.37	3.00e-134	469.00
IUUC-Dme-032189	Drosophila melanogaster	26.95	3.00e-37	147.00
IUUC-Ete-032247	Echinops telfairi	26.72	6.00e-31	126.00
IUUC-Eca-034285	Equus caballus	29.56	5.00e-38	150.00
IUUC-Eeu-035322	Erinaceus europaeus	26.47	3.00e-32	130.00
IUUC-Fca-036114	Felis catus	30.07	1.00e-38	152.00
IUUC-Fal-036891	Ficedula albicollis	30.65	6.00e-34	136.00
IUUC-Fox-037965	Fusarium oxysporum	51.37	1.00e-128	451.00
IUUC-Fso-038244	Fusarium solani	51.04	4.00e-127	446.00
IUUC-Gmo-039040	Gadus morhua	28.85	1.00e-44	171.00
IUUC-Ggr-040093	Gaeumannomyces graminis	46.46	3.00e-103	366.00
IUUC-Gga-040610	Gallus gallus	31.11	3.00e-42	164.00
IUUC-Gac-042117	Gasterosteus aculeatus	30.61	1.00e-42	165.00
IUUC-Gma-043425	Glycine max	32.31	7.00e-50	189.00
IUUC-Ggo-045179	Gorilla gorilla	30.15	6.00e-39	153.00
IUUC-Hsa-046114	Homo sapiens	30.15	2.00e-38	151.00
IUUC-Hvu-047331	Hordeum vulgare	31.01	6.00e-39	153.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	29.17	1.00e-37	149.00
IUUC-Kpa-049304	Komagataella pastoris	46.03	2.00e-112	397.00
IUUC-Lch-050655	Latimeria chalumnae	28.06	9.00e-30	122.00
IUUC-Lpe-051675	Leersia perrieri	30.29	4.00e-41	160.00
IUUC-Loc-052868	Lepisosteus oculatus	29.05	7.00e-42	162.00
IUUC-Lma-053258	Leptosphaeria maculans	53.49	3.00e-140	491.00
IUUC-Laf-053993	Loxodonta africana	28.92	3.00e-38	150.00
IUUC-Mcc-055128	Macaca mulatta	24.08	5.00e-22	96.70
IUUC-Meu-056501	Macropus eugenii	31.02	5.00e-34	136.00
IUUC-Mor-057114	Magnaporthe oryzae	50.10	7.00e-130	455.00
IUUC-Mpo-057463	Magnaporthe poae	46.15	3.00e-44	169.00
IUUC-Mtr-058367	Medicago truncatula	32.77	3.00e-46	177.00
IUUC-Mla-059107	Melampsora laricipopulina	28.94	7.00e-46	176.00
IUUC-Mga-059745	Meleagris gallopavo	30.86	7.00e-42	162.00
IUUC-Mvi-060362	Microbotryum violaceum	29.50	4.00e-46	177.00
IUUC-Mdo-062257	Monodelphis domestica	30.43	1.00e-39	155.00
IUUC-Mmu-063546	Mus musculus	30.12	1.00e-40	158.00
IUUC-Mac-065540	Musa acuminata	30.96	6.00e-42	163.00
IUUC-Mpu-066284	Mustela putorius furo	29.09	1.00e-38	152.00
IUUC-Mlu-067241	Myotis lucifugus	29.63	2.00e-38	151.00
IUUC-Nfi-068260	Neosartorya fischeri	85.17	0.00e+00	753.00
IUUC-Ncr-068719	Neurospora crassa	55.83	7.00e-135	472.00
IUUC-Nle-068981	Nomascus leucogenys	29.90	1.00e-37	148.00
IUUC-Opr-071218	Ochotona princeps	27.43	4.00e-36	143.00
IUUC-Ont-071646	Oreochromis niloticus	30.08	6.00e-40	156.00
IUUC-Oan-073453	Ornithorhynchus anatinus	28.64	2.00e-44	171.00
IUUC-Ocu-074008	Oryctolagus cuniculus	28.85	6.00e-39	153.00
IUUC-Oba-075712	Oryza barthii	28.85	5.00e-32	130.00
IUUC-Obr-076721	Oryza brachyantha	30.05	4.00e-42	164.00
IUUC-Ogl-077229	Oryza glaberrima	31.35	7.00e-44	169.00
IUUC-Ogu-078977	Oryza glumaepatula	28.85	4.00e-32	130.00
IUUC-Oin-079683	Oryza indica	31.18	9.00e-44	169.00
IUUC-Olo-080291	Oryza longistaminata	28.81	8.00e-25	105.00
IUUC-Ome-081834	Oryza meridionalis	31.41	2.00e-43	168.00
IUUC-Oni-082507	Oryza nivara	29.93	4.00e-38	150.00
IUUC-Opu-083396	Oryza punctata	31.59	5.00e-44	170.00
IUUC-Oru-085220	Oryza rufipogon	29.93	3.00e-38	150.00
IUUC-Osa-085767	Oryza sativa	31.18	9.00e-44	169.00
IUUC-Ola-087420	Oryzias latipes	28.54	9.00e-45	172.00
IUUC-Olu-087740	Ostreococcus lucimarinus	27.37	1.00e-29	122.00
IUUC-Oga-088264	Otolemur garnettii	29.66	4.00e-37	147.00
IUUC-Oar-089335	Ovis aries	28.89	2.00e-37	148.00
IUUC-Ptr-091320	Pan troglodytes	30.15	2.00e-38	151.00
IUUC-Pan-092833	Papio anubis	29.90	6.00e-38	149.00
IUUC-Psi-093504	Pelodiscus sinensis	30.85	3.00e-39	154.00
IUUC-Pma-094189	Petromyzon marinus	28.64	1.00e-38	152.00
IUUC-Pno-094929	Phaeosphaeria nodorum	54.14	2.00e-138	484.00
IUUC-Ppa-095429	Physcomitrella patens	32.35	1.00e-52	198.00
IUUC-Pfo-096337	Poecilia formosa	28.53	3.00e-43	167.00
IUUC-Pab-097571	Pongo abelii	30.39	2.00e-38	151.00
IUUC-Pop-099977	Populus trichocarpa	32.78	1.00e-45	175.00
IUUC-Pca-100394	Procavia capensis	27.46	4.00e-30	123.00
IUUC-Ppe-101848	Prunus persica	33.02	1.00e-47	182.00
IUUC-Pva-102921	Pteropus vampyrus	27.27	7.00e-16	76.60
IUUC-Pgr-103637	Puccinia graminis	29.56	7.00e-50	189.00
IUUC-Ptt-103781	Puccinia triticina	29.60	5.00e-53	200.00
IUUC-Pte-104135	Pyrenophora teres	55.38	9.00e-134	469.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	53.89	6.00e-134	469.00
IUUC-Rno-105114	Rattus norvegicus	29.66	7.00e-39	152.00
IUUC-Sce-106401	Saccharomyces cerevisiae	42.69	8.00e-104	369.00
IUUC-Sha-107122	Sarcophilus harrisii	31.18	1.00e-35	142.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	39.46	1.00e-88	318.00
IUUC-Spo-108134	Schizosaccharomyces pombe	39.15	5.00e-86	309.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	57.71	1.00e-157	547.00
IUUC-Smo-108720	Selaginella moellendorffii	27.20	6.00e-39	153.00
IUUC-Sit-110354	Setaria italica	29.55	4.00e-43	167.00
IUUC-Sly-111178	Solanum lycopersicum	31.38	7.00e-46	176.00
IUUC-Stu-112778	Solanum tuberosum	31.15	9.00e-45	172.00
IUUC-Sbi-114193	Sorghum bicolor	29.76	1.00e-41	162.00
IUUC-Sre-115002	Sporisorium reilianum	26.27	2.00e-33	135.00
IUUC-Ssc-116066	Sus scrofa	29.14	4.00e-37	147.00
IUUC-Tgu-117048	Taeniopygia guttata	31.32	1.00e-39	155.00
IUUC-Tni-119820	Tetraodon nigroviridis	28.85	7.00e-39	152.00
IUUC-Tca-121605	Theobroma cacao	32.03	1.00e-45	175.00
IUUC-Tre-121947	Trichoderma reesei	50.31	2.00e-128	451.00
IUUC-Tvi-122481	Trichoderma virens	51.14	2.00e-131	460.00
IUUC-Tae-123504	Triticum aestivum	31.74	4.00e-45	174.00
IUUC-Tur-126586	Triticum urartu	30.99	2.00e-40	157.00
IUUC-Tme-126900	Tuber melanosporum	47.62	3.00e-110	389.00
IUUC-Uma-129628	Ustilago maydis	26.75	8.00e-29	120.00
IUUC-Vpa-130260	Vicugna pacos	29.14	1.00e-38	152.00
IUUC-Vvi-131009	Vitis vinifera	33.96	4.00e-51	193.00
IUUC-Xtr-132083	Xenopus tropicalis	30.56	6.00e-44	169.00
IUUC-Xma-133094	Xiphophorus maculatus	29.34	2.00e-43	168.00
IUUC-Yli-134531	Yarrowia lipolytica	36.65	4.00e-73	266.00
IUUC-Zma-135509	Zea mays	30.33	1.00e-43	168.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence