• HOME
  • BROWSE
  • SEARCH
  • LINK
  • DOWNLOAD
  • USER GUIDE
  • Protein
  • Gene
  • Annotation
  • Classification
  • Domain Profile
  • Function
  • Protein Sequence
  • Nucleotide Sequence
  • Keyword
  • GO
  • Orthology
  • TOP

Basic Information Integrated Annotations

Tag Content
iUUCD ID IUUC-Ath-007333
Ensembl Protein ID AT5G03240.3
UniProt Accession Q1EC66; O80715; P59263; Q38875; Q9LDJ2; Q9LYW1; Q9M0W3; Q9M1P9; Q9S7X3; UBQ3_ARATH
Genbank Protein ID BAB08384.1; CAB86091.1; AED90574.1; AED90575.1; AED90576.1; AAO00780.1; ABF85770.1; BAH19791.1
Protein Name Polyubiquitin 3; Ubiquitin
Genbank Nucleotide ID L05363; AL163002; CP002688; CP002688; CP002688; BT002420; BT025868; AK317101
Gene Name UBQ3; At5g03240; F15A17_270; MOK16.15
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT5G03240 AT5G03240.3 AT5G03240.3
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
iRefIndexPINAHINTMentha
Post-translational Modifications (PTMs)
dbPTM
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
ULD/UBL/NEDD8 7.80e-166 539.6 229 304
ULD/UDP/UBQ/UBQ_PIM 2.90e-113 370.8 229 301
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   ULD/UBL/NEDD8

   S: 1    mlikvktLtgkeieieieesdtierikerveekeGiPPsqqrliyaGkqleddktaadynlekgsvLhLvLaLrGG 76
    m+i+vktLtgk+i++e+e+sdti+++k+++++keGiPP+qqrli+aGkqled++t+adyn++k+s+LhLvL+LrGG
   Q: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
    89*************************************************************************9 PP
   


   ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesgvppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkk 73
    m+++vktl+gk+++lev+++dt+ ++K+ki+++ g+pp+qq+LI+aGk+L+D +tL +++i+++s++hlv++
   Q: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 301
    99********************************************************************986 PP
   

Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description



     Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling (By similarity).
Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling (By similarity).
Protein Sequence
(Fasta)
MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN 60
IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID NVKAKIQDKE GIPPDQQRLI 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Ath-007333|ULD,NEDD8;ULD,UBQ_PIM|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
TCATATGATT CCTTCCTTTA GTTTCGTGAT AATAATCCTC AACTGATATC TTCCTTTTTT 60
TGTTTTGGCT AAAGATATTT TATTCTCATT AATAGAAAAG ACGGTTTTGG GCTTTTGGTT 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Ath-007333|ULD,NEDD8;ULD,UBQ_PIM|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-1017--Isopeptide bond
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0833--Ubl conjugation pathway

Interpro

IPR019956--Ubiquitin
IPR029071--Ubiquitin-rel_dom
IPR019954--Ubiquitin_CS
IPR000626--Ubiquitin_dom

PROSITE

PS00299--UBIQUITIN_1
PS50053--UBIQUITIN_2

Pfam

PF00240--ubiquitin

PRINTS

PR00348--UBIQUITIN

SMART

SM00213--UBQ

Gene Ontology

GO:0005634--C:nucleus
GO:0005773--C:vacuole
GO:0010224--P:response to UV-B
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG ath:AT5G03240
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001483 Ailuropoda melanoleuca 95.63 8.00e-125 438.00
IUUC-Afu-009031 Aspergillus fumigatus 93.95 8.00e-169 585.00
IUUC-Ani-009444 Aspergillus nidulans 97.05 1.00e-170 591.00
IUUC-Bta-012771 Bos taurus 95.74 3.00e-168 583.00
IUUC-Bdi-015064 Brachypodium distachyon 100.00 4.00e-174 602.00
IUUC-Bra-017586 Brassica rapa 100.00 1.00e-130 457.00
IUUC-Cre-022556 Chlamydomonas reinhardtii 98.68 1.00e-83 301.00
IUUC-Csa-024086 Chlorocebus sabaeus 96.05 9.00e-125 438.00
IUUC-Eca-033850 Equus caballus 95.63 8.00e-125 438.00
IUUC-Fca-036501 Felis catus 95.63 8.00e-125 438.00
IUUC-Fso-038454 Fusarium solani 97.70 1.00e-171 594.00
IUUC-Ggr-040118 Gaeumannomyces graminis 97.37 3.00e-171 593.00
IUUC-Itr-048563 Ictidomys tridecemlineatus 92.31 2.00e-43 166.00
IUUC-Laf-053586 Loxodonta africana 95.74 3.00e-168 583.00
IUUC-Mor-056991 Magnaporthe oryzae 97.37 3.00e-171 593.00
IUUC-Mpo-057384 Magnaporthe poae 97.37 3.00e-171 593.00
IUUC-Mmr-061259 Microcebus murinus 90.83 8.00e-115 405.00
IUUC-Mpu-066106 Mustela putorius furo 80.98 5.00e-135 472.00
IUUC-Mlu-068100 Myotis lucifugus 96.05 6.00e-168 582.00
IUUC-Ncr-068770 Neurospora crassa 97.37 9.00e-170 588.00
IUUC-Nle-069526 Nomascus leucogenys 96.05 6.00e-168 582.00
IUUC-Oan-073690 Ornithorhynchus anatinus 95.74 3.00e-168 583.00
IUUC-Ocu-074508 Oryctolagus cuniculus 95.63 8.00e-125 438.00
IUUC-Ome-081397 Oryza meridionalis 34.43 1.00e-41 162.00
IUUC-Oni-082299 Oryza nivara 34.10 4.00e-41 161.00
IUUC-Oga-089171 Otolemur garnettii 95.42 1.00e-81 294.00
IUUC-Pno-095087 Phaeosphaeria nodorum 96.52 2.00e-127 446.00
IUUC-Pfo-096371 Poecilia formosa 87.45 3.00e-126 443.00
IUUC-Pva-102696 Pteropus vampyrus 95.63 8.00e-125 438.00
IUUC-Ptt-103710 Puccinia triticina 99.67 2.00e-174 603.00
IUUC-Ssl-108565 Sclerotinia sclerotiorum 98.68 4.00e-172 596.00
IUUC-Smo-108834 Selaginella moellendorffii 98.68 9.00e-172 595.00
IUUC-Tgu-116620 Taeniopygia guttata 92.07 3.00e-150 523.00
IUUC-Tca-121145 Theobroma cacao 99.67 2.00e-174 603.00
IUUC-Tre-122012 Trichoderma reesei 97.37 3.00e-171 593.00
IUUC-Tvi-122369 Trichoderma virens 97.37 3.00e-171 593.00
IUUC-Tae-125795 Triticum aestivum 100.00 2.00e-174 604.00
Created Date 25-Jun-2017

https://dev.news.makassarkota.go.id/public/pgsoft-demo/ https://jdih.sumbawabaratkab.go.id/lato/pg-soft-demo/ https://dev.news.makassarkota.go.id/public/slot-gacor/ http://pbb.tanahbumbukab.go.id/-/slot-gacor/ slot gacor https://siakad.unipra.ac.id/sass/slot-gacor-x500/ http://kpm.dinus.ac.id/assets/images/berita/slot/
Copyright © 2004-2017.The CUCKOO Workgroup. All Rights Reserved