iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Gma-043425

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Ribosome biogenesis protein WDR12 homolog

Genbank Nucleotide ID

CM000838

Gene Name

LOC100819142; GLYMA_05G027800

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
GLYMA05G01170	GLYMA05G01170.1	GLYMA05G01170.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.90e-29	102.1	354	388

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tllvsGsdDgtikvWDlrtg 33
           Ht++v+++++  ++  +l+s+s+Dg++++WDlrt 
   Q: 354  HTSWVSACKWhdQSwFHLLSASYDGKVMLWDLRTA 388
           **********9744577***************986 PP

Organism

Glycine max

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MEEEGSARRI QVRFVTKLSE PYKIPTTAIA IPADLTRFGL SSLVNALLES NDAPEPFDFL 60
IDGEFIRMSL EQFLLAKGIS AERILEVEYT RAVAPRKEED PSLHDDWVSA VDGSSSRFFL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAACTCCTTA ATAACATAAA CCCAGAACAA AACCCCCCGT GTTCTCTGTA CCGCTAAACC 60
CAACCCTAGT TTATTTTCTT CTTCACCTTG ACTTGTTTTT TGCAGAAGAA AGTGAGGAAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000460--P:maturation of 5.8S rRNA
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000470--P:maturation of LSU-rRNA
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

gmx:100819142

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002544	Amborella trichopoda	60.23	3.00e-155	541.00
IUUC-Ani-009136	Aspergillus nidulans	32.76	1.00e-47	184.00
IUUC-Bgr-012218	Blumeria graminis	28.92	9.00e-42	164.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	38.46	1.00e-64	240.00
IUUC-Cho-024426	Choloepus hoffmanni	35.74	7.00e-46	177.00
IUUC-Fal-036891	Ficedula albicollis	36.83	7.00e-52	197.00
IUUC-Lma-053258	Leptosphaeria maculans	31.67	3.00e-42	167.00
IUUC-Mcc-055128	Macaca mulatta	31.08	1.00e-40	160.00
IUUC-Meu-056501	Macropus eugenii	37.54	8.00e-51	194.00
IUUC-Mpo-057463	Magnaporthe poae	35.62	6.00e-18	84.00
IUUC-Mla-059107	Melampsora laricipopulina	28.82	8.00e-40	157.00
IUUC-Mvi-060362	Microbotryum violaceum	26.68	2.00e-33	136.00
IUUC-Olu-087740	Ostreococcus lucimarinus	33.03	3.00e-61	229.00
IUUC-Pno-094929	Phaeosphaeria nodorum	29.94	2.00e-40	159.00
IUUC-Ppa-095429	Physcomitrella patens	53.05	3.00e-129	454.00
IUUC-Sha-107122	Sarcophilus harrisii	36.43	6.00e-62	231.00
IUUC-Smo-108720	Selaginella moellendorffii	48.95	7.00e-120	424.00
IUUC-Sly-111023	Solanum lycopersicum	64.15	2.00e-167	582.00
IUUC-Yli-134531	Yarrowia lipolytica	26.12	1.00e-29	124.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence