iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Ppa-095924

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Predicted protein

Genbank Nucleotide ID

DS544903

Gene Name

PHYPADRAFT_203375

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PP1S14_250V6	PP1S14_250V6.2	PP1S14_250V6.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.40e-26	90.9	395	427
E3 activity/RING/U-box	9.40e-11	42.4	2	68
UBD/Beta-Prp	8.70e-50	170.3	227	461

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlrt 32
           gHt++vt+++f  ++ +l++++ Dg +k+WDlr+
   Q: 395  GHTGPVTDISFseNGYFLATAAQDG-VKLWDLRK 427
           8**********86557789999996.8****986 PP

E3 activity/RING/U-box

   S: 7    lCpIslelMrdPvvlp.sGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceens 73
            C+Is+  ++dPvv+  sG  ++r+ I k+la++g+ +Pvt++ ++ +dl+  +t +++  + +++ s
   Q: 2    FCSISGVTPEDPVVSRkSGLLFERRLIFKHLADNGT-DPVTGEAMSVDDLISIKTNKAVKPRPLQAAS 68
           6**************99******************9.**********************999988766 PP

UBD/Beta-Prp

   S: 13   itcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdls...tgkcvhtlkghedsvlslsfsp 104
           i +++++++k+l+++g+ dgt  v++ ++g l+++lsgh++ vt+vkf  +++  +tgs D+t+k+w  +   +++c htlk h+++v+++++++
   Q: 227  ILSIDVHQSKDLVLSGGVDGTAVVFNRSSGELVSTLSGHSKRVTSVKFVAKDECALTGSVDKTVKIWQGQedgSYTCKHTLKDHSAEVRAVTVHA 321
           55699**************************************************************6666679********************* PP
   S: 105  sgdklvsGshdrtirvwdletgqcleetlsg.hdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsg 198
           +++++v++s+d+t + +dl+tg cl +++++  ++  +++++hpdg +l +G++ + vr+Wd+k++  + +++g ht++v+ +sf++ng +l+++
   Q: 322  TQNYFVTASADKTWNFYDLSTGLCLAQVNDPsVQDGYTSASFHPDGLILGTGTTESLVRIWDVKSQANVAKFEG-HTGPVTDISFSENGYFLATA 415
           **************************955551566789***********************************9.*******************9 PP
   S: 199  sldgtvklwdlqtgecvrtlnght..dnvksvrfspnderlvsgssD 243
           ++dg vklwdl++ +  r++  ++  + ++ v+f+  + +l++g+sD
   Q: 416  AQDG-VKLWDLRKLKNFRSFAPYDsnTLTNTVEFDYSGSYLAVGGSD 461
           9998.9******99999999875533778999999*********999 PP

Organism

Physcomitrella patens

Protein Sequence
(Fasta)

MFCSISGVTP EDPVVSRKSG LLFERRLIFK HLADNGTDPV TGEAMSVDDL ISIKTNKAVK 60
PRPLQAASIP GMLGLFQNEW DAVVLSNYAL EQQLHTARQE LSHALYQHDA ACRVIARLKK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCTTCGTATT CTTCTTCCTC TCGCAATTTG CCGTTTTCTT CTCGGTTTTG TTTTGTTTTT 60
TTTCGTATTG TATTGTTTTC CCCCGTTCGC GATGGCGATC CTGCGTGTGT AGTCTCCGCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR013915--Pre-mRNA_splic_Prp19
IPR003613--Ubox_domain
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08606--Prp19
PF00400--WD40

SMART

SM00504--Ubox
SM00320--WD40

Gene Ontology

GO:0000974--C:Prp19 complex
GO:0071006--C:U2-type catalytic step 1 spliceosome
GO:0004842--F:ubiquitin-protein transferase activity
GO:0000349--P:generation of catalytic spliceosome for first transesterification step

KEGG

ppp:PHYPADRAFT_203375

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000488	Aegilops tauschii	65.42	0.00e+00	688.00
IUUC-Atr-002594	Amborella trichopoda	68.87	0.00e+00	767.00
IUUC-Aly-005586	Arabidopsis lyrata	67.50	0.00e+00	721.00
IUUC-Ath-007693	Arabidopsis thaliana	67.18	0.00e+00	711.00
IUUC-Ang-009746	Aspergillus niger	35.55	8.00e-71	260.00
IUUC-Ate-010412	Aspergillus terreus	36.04	2.00e-65	242.00
IUUC-Bdi-014277	Brachypodium distachyon	69.83	0.00e+00	761.00
IUUC-Bol-016045	Brassica oleracea	67.12	0.00e+00	721.00
IUUC-Bra-017902	Brassica rapa	66.60	0.00e+00	719.00
IUUC-Dse-031220	Dothistroma septosporum	33.81	4.00e-67	248.00
IUUC-Ete-033035	Echinops telfairi	42.80	2.00e-53	202.00
IUUC-Fox-037922	Fusarium oxysporum	32.34	2.00e-62	232.00
IUUC-Gma-043635	Glycine max	71.43	0.00e+00	763.00
IUUC-Hvu-047442	Hordeum vulgare	65.08	9.00e-122	429.00
IUUC-Lpe-050976	Leersia perrieri	68.67	0.00e+00	746.00
IUUC-Mtr-057756	Medicago truncatula	68.54	0.00e+00	728.00
IUUC-Mac-064972	Musa acuminata	71.07	0.00e+00	763.00
IUUC-Oba-075509	Oryza barthii	69.44	0.00e+00	759.00
IUUC-Obr-076480	Oryza brachyantha	69.25	0.00e+00	759.00
IUUC-Ogl-077052	Oryza glaberrima	69.44	0.00e+00	759.00
IUUC-Ogu-078919	Oryza glumaepatula	69.63	0.00e+00	761.00
IUUC-Olo-080376	Oryza longistaminata	70.25	0.00e+00	715.00
IUUC-Ome-081973	Oryza meridionalis	70.04	0.00e+00	714.00
IUUC-Oni-082849	Oryza nivara	69.44	0.00e+00	760.00
IUUC-Opu-083243	Oryza punctata	69.44	0.00e+00	759.00
IUUC-Oru-084613	Oryza rufipogon	69.44	0.00e+00	759.00
IUUC-Osa-085407	Oryza sativa	69.44	0.00e+00	759.00
IUUC-Olu-087757	Ostreococcus lucimarinus	43.19	2.00e-112	399.00
IUUC-Pno-095115	Phaeosphaeria nodorum	37.11	3.00e-74	271.00
IUUC-Pop-099854	Populus trichocarpa	70.99	0.00e+00	770.00
IUUC-Ppe-101383	Prunus persica	69.11	0.00e+00	728.00
IUUC-Sja-107697	Schizosaccharomyces japonicus	33.03	2.00e-45	176.00
IUUC-Spo-108315	Schizosaccharomyces pombe	31.07	5.00e-41	161.00
IUUC-Sit-109873	Setaria italica	70.41	0.00e+00	756.00
IUUC-Sly-111673	Solanum lycopersicum	70.60	0.00e+00	735.00
IUUC-Stu-112125	Solanum tuberosum	71.18	0.00e+00	739.00
IUUC-Sbi-114696	Sorghum bicolor	65.02	0.00e+00	667.00
IUUC-Tca-121807	Theobroma cacao	70.48	0.00e+00	763.00
IUUC-Tae-125713	Triticum aestivum	70.02	0.00e+00	764.00
IUUC-Tur-126664	Triticum urartu	61.38	0.00e+00	706.00
IUUC-Vvi-131668	Vitis vinifera	70.08	0.00e+00	763.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence