iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.70e-08	33.9	624	652

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 3    tdsvtclaf..sdtllvsGsdDgtikvWD 29
           +++v+ l+f  s+++l++G   g++ v D
   Q: 624  SSPVCTLQFvqSTRRLAVGFKCGKVAVLD 652
           689*******76699****9999999998 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MFVRKFLQKS SGGQNPPPPI APPPRGCLMA EDLDPHIITH SGIPSTASLL AFDPIQCLLA 60
VGTLDGRIKV IGGDNIEAIL ASPKQLPFKN LEFMQNQGFL VSISNENEIQ VWDLDLRQPA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATCGGTCATC CTCTCTGACT CTCTCAAATC GAATCTGAAG CTTTTAGTTT TATTCTACGA 60
TCAAATTCCG AACGAACAAA ATTCTCTTGA TTCCGCTGAT TTCTCCGTCC GATGCATCTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome

Interpro

IPR002052--DNA_methylase_N6_adenine_CS
IPR001388--Synaptobrevin
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS00092--N6_MTASE
PS50892--V_SNARE

Pfam

PF00957--Synaptobrevin

SMART

SM00320--WD40

Gene Ontology

GO:0005737--C:cytoplasm
GO:0016021--C:integral component of membrane
GO:0005886--C:plasma membrane
GO:0005096--F:GTPase activator activity
GO:0008168--F:methyltransferase activity
GO:0003676--F:nucleic acid binding
GO:0017137--F:Rab GTPase binding
GO:0019905--F:syntaxin binding
GO:0017157--P:regulation of exocytosis
GO:0016192--P:vesicle-mediated transport

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000919	Aegilops tauschii	38.87	0.00e+00	690.00
IUUC-Aml-001923	Ailuropoda melanoleuca	22.51	3.00e-21	97.10
IUUC-Atr-002583	Amborella trichopoda	43.87	0.00e+00	700.00
IUUC-Apl-003619	Anas platyrhynchos	22.33	2.00e-15	77.80
IUUC-Aca-004796	Anolis carolinensis	22.88	2.00e-22	101.00
IUUC-Aly-005770	Arabidopsis lyrata	93.68	0.00e+00	2071.00
IUUC-Ago-007756	Ashbya gossypii	28.40	1.00e-07	51.60
IUUC-Acl-008044	Aspergillus clavatus	24.04	1.00e-10	61.60
IUUC-Afl-008612	Aspergillus flavus	24.69	4.00e-10	60.10
IUUC-Afu-008901	Aspergillus fumigatus	25.96	7.00e-14	72.40
IUUC-Ani-009223	Aspergillus nidulans	25.00	1.00e-09	58.50
IUUC-Ang-009861	Aspergillus niger	22.87	3.00e-17	83.60
IUUC-Aor-010078	Aspergillus oryzae	21.99	4.00e-10	60.10
IUUC-Ate-010462	Aspergillus terreus	23.10	9.00e-14	72.00
IUUC-Ame-010663	Astyanax mexicanus	21.59	5.00e-19	89.70
IUUC-Bgr-012214	Blumeria graminis	26.95	4.00e-15	76.60
IUUC-Bta-013516	Bos taurus	22.81	2.00e-22	101.00
IUUC-Bci-013698	Botrytis cinerea	22.77	1.00e-14	74.70
IUUC-Bdi-015011	Brachypodium distachyon	41.72	0.00e+00	691.00
IUUC-Bol-015788	Brassica oleracea	83.97	0.00e+00	1818.00
IUUC-Bra-017845	Brassica rapa	85.39	0.00e+00	1849.00
IUUC-Cja-018984	Callithrix jacchus	22.37	1.00e-21	98.20
IUUC-Cfa-021212	Canis familiaris	22.51	3.00e-21	97.10
IUUC-Cpo-021354	Cavia porcellus	21.50	5.00e-11	62.80
IUUC-Csa-023249	Chlorocebus sabaeus	22.18	3.00e-21	97.10
IUUC-Cho-025086	Choloepus hoffmanni	32.76	6.00e-05	42.70
IUUC-Cin-025731	Ciona intestinalis	27.44	1.00e-22	99.40
IUUC-Csv-026036	Ciona savignyi	24.28	7.00e-30	125.00
IUUC-Cgl-026432	Colletotrichum gloeosporioides	25.37	3.00e-14	73.90
IUUC-Dre-027886	Danio rerio	21.77	1.00e-19	92.00
IUUC-Dno-029242	Dasypus novemcinctus	22.42	4.00e-21	96.70
IUUC-Dor-031024	Dipodomys ordii	22.18	4.00e-21	96.70
IUUC-Dse-031263	Dothistroma septosporum	21.04	9.00e-16	78.60
IUUC-Dme-031607	Drosophila melanogaster	23.08	5.00e-19	90.10
IUUC-Ete-032893	Echinops telfairi	22.18	2.00e-21	97.80
IUUC-Eca-034305	Equus caballus	23.71	5.00e-11	62.80
IUUC-Eeu-034943	Erinaceus europaeus	23.42	7.00e-17	82.80
IUUC-Fca-036345	Felis catus	22.56	9.00e-22	98.20
IUUC-Fal-036761	Ficedula albicollis	22.55	1.00e-22	102.00
IUUC-Gmo-038889	Gadus morhua	21.48	4.00e-19	90.10
IUUC-Ggr-039723	Gaeumannomyces graminis	22.67	8.00e-12	65.50
IUUC-Gga-040415	Gallus gallus	22.37	2.00e-22	101.00
IUUC-Gac-042416	Gasterosteus aculeatus	22.70	7.00e-18	85.90
IUUC-Gma-043996	Glycine max	45.06	0.00e+00	853.00
IUUC-Ggo-045391	Gorilla gorilla	22.18	2.00e-21	97.40
IUUC-Hsa-045903	Homo sapiens	22.18	2.00e-21	97.40
IUUC-Hvu-047650	Hordeum vulgare	40.05	2.00e-176	612.00
IUUC-Itr-048031	Ictidomys tridecemlineatus	23.90	2.00e-13	70.90
IUUC-Lch-049973	Latimeria chalumnae	21.97	4.00e-14	73.20
IUUC-Lpe-051115	Leersia perrieri	41.81	0.00e+00	666.00
IUUC-Loc-051905	Lepisosteus oculatus	21.76	2.00e-20	94.70
IUUC-Laf-053723	Loxodonta africana	22.00	1.00e-20	94.70
IUUC-Mcc-055526	Macaca mulatta	22.18	2.00e-21	97.80
IUUC-Meu-056246	Macropus eugenii	27.68	1.00e-13	72.00
IUUC-Mpo-057585	Magnaporthe poae	23.05	3.00e-13	70.10
IUUC-Mtr-058362	Medicago truncatula	44.50	0.00e+00	860.00
IUUC-Mga-059850	Meleagris gallopavo	22.35	2.00e-15	77.40
IUUC-Mmr-061273	Microcebus murinus	22.56	1.00e-21	98.20
IUUC-Mdo-062626	Monodelphis domestica	23.25	3.00e-21	97.10
IUUC-Mmu-063800	Mus musculus	22.74	3.00e-21	97.10
IUUC-Mac-065436	Musa acuminata	40.08	0.00e+00	737.00
IUUC-Mpu-065780	Mustela putorius furo	23.73	1.00e-17	84.00
IUUC-Mlu-067504	Myotis lucifugus	21.98	1.00e-21	98.20
IUUC-Nfi-068318	Neosartorya fischeri	25.32	9.00e-14	72.00
IUUC-Nle-069640	Nomascus leucogenys	22.18	2.00e-21	97.40
IUUC-Opr-070896	Ochotona princeps	22.81	1.00e-14	75.10
IUUC-Ont-072455	Oreochromis niloticus	22.53	3.00e-20	93.60
IUUC-Oan-073349	Ornithorhynchus anatinus	24.74	1.00e-18	85.90
IUUC-Ocu-074214	Oryctolagus cuniculus	21.24	8.00e-21	95.90
IUUC-Oba-075180	Oryza barthii	41.47	0.00e+00	685.00
IUUC-Obr-076139	Oryza brachyantha	40.10	0.00e+00	749.00
IUUC-Ogl-077142	Oryza glaberrima	42.27	0.00e+00	709.00
IUUC-Ogu-079037	Oryza glumaepatula	41.47	0.00e+00	682.00
IUUC-Oin-079192	Oryza indica	42.49	0.00e+00	714.00
IUUC-Olo-080693	Oryza longistaminata	42.05	4.00e-153	535.00
IUUC-Oni-082885	Oryza nivara	41.68	0.00e+00	689.00
IUUC-Oru-084893	Oryza rufipogon	44.32	2.00e-146	513.00
IUUC-Osa-085916	Oryza sativa	42.38	0.00e+00	710.00
IUUC-Ola-086914	Oryzias latipes	23.89	1.00e-13	72.00
IUUC-Oga-089148	Otolemur garnettii	21.17	3.00e-21	97.40
IUUC-Oar-090261	Ovis aries	22.63	8.00e-22	99.40
IUUC-Ptr-091012	Pan troglodytes	22.18	2.00e-21	97.40
IUUC-Pan-092899	Papio anubis	22.24	6.00e-21	96.30
IUUC-Psi-093405	Pelodiscus sinensis	22.55	1.00e-22	102.00
IUUC-Pfo-096143	Poecilia formosa	21.94	9.00e-20	92.40
IUUC-Pab-098201	Pongo abelii	24.31	1.00e-17	84.70
IUUC-Pop-099413	Populus trichocarpa	51.15	0.00e+00	1019.00
IUUC-Pca-101111	Procavia capensis	24.05	1.00e-17	85.50
IUUC-Ppe-101236	Prunus persica	50.04	0.00e+00	1045.00
IUUC-Pva-102373	Pteropus vampyrus	21.86	4.00e-09	57.00
IUUC-Rno-106102	Rattus norvegicus	22.85	2.00e-20	94.40
IUUC-Sce-106140	Saccharomyces cerevisiae	23.13	2.00e-07	51.20
IUUC-Sha-106592	Sarcophilus harrisii	21.92	1.00e-13	72.00
IUUC-Sit-110386	Setaria italica	41.70	0.00e+00	759.00
IUUC-Sly-111338	Solanum lycopersicum	55.76	4.00e-99	353.00
IUUC-Stu-112417	Solanum tuberosum	56.66	3.00e-99	354.00
IUUC-Sar-113007	Sorex araneus	30.51	7.00e-17	82.80
IUUC-Sbi-114175	Sorghum bicolor	40.16	0.00e+00	741.00
IUUC-Ssc-115307	Sus scrofa	22.18	5.00e-21	96.30
IUUC-Tgu-116507	Taeniopygia guttata	22.55	9.00e-23	102.00
IUUC-Tru-118317	Takifugu rubripes	21.99	4.00e-13	70.10
IUUC-Tsy-119133	Tarsius syrichta	31.07	7.00e-16	79.30
IUUC-Tni-120362	Tetraodon nigroviridis	23.81	1.00e-18	88.60
IUUC-Tca-121612	Theobroma cacao	52.63	0.00e+00	1075.00
IUUC-Tae-125643	Triticum aestivum	41.31	0.00e+00	783.00
IUUC-Tur-126560	Triticum urartu	40.09	0.00e+00	708.00
IUUC-Tbe-127510	Tupaia belangeri	21.67	2.00e-17	84.30
IUUC-Ttr-129239	Tursiops truncatus	22.00	4.00e-21	96.70
IUUC-Vda-129843	Verticillium dahliae	22.57	3.00e-20	93.60
IUUC-Vpa-130524	Vicugna pacos	23.55	1.00e-16	81.60
IUUC-Vvi-131567	Vitis vinifera	50.45	0.00e+00	1027.00
IUUC-Xtr-132060	Xenopus tropicalis	23.05	5.00e-16	79.70
IUUC-Xma-133008	Xiphophorus maculatus	21.64	2.00e-19	91.30
IUUC-Yli-134491	Yarrowia lipolytica	21.91	2.00e-14	73.90
IUUC-Zma-135923	Zea mays	38.70	5.00e-160	558.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence