iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Dse-031314

Ensembl Protein ID

EME44538

UniProt Accession

N1PNN9; N1PNN9_DOTSN

Genbank Protein ID

EME44538.1

Protein Name

Eukaryotic translation initiation factor 3 subunit F

Genbank Nucleotide ID

KB446539

Gene Name

DOTSEDRAFT_152462

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
DOTSEDRAFT_152462	EME44538	EME44538

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
DUB/JAMM	35.74	4.00e-43	172.00	IUUC-Hsa-046860

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Dothistroma septosporum

Functional Description
(View)

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.

Protein Sequence
(Fasta)

MGDNSFLHLA RPLAPAAVSS QAPNTAPITV NIQPQALFSI LDHASRRPAE QERVIGTLLG 60
SRSEDGTEVE IRNCYAVPHT ETAEQVEVDM DYQKRMLELH LKAAPKEVLI GWYATSSELN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGCAGCCACC ACCCATCCGC ACCACAGGCC AACTTTCGCC CGGAGCGTCT CATACGCCGG 60
TACCACACGC GAAGATGGGC GACAACAGTT TCCTACATCT CGCGCGGCCA CTTGCGCCCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0396--Initiation factor
KW-0648--Protein biosynthesis
KW-1185--Reference proteome

Interpro

IPR027531--eIF3f
IPR000555--JAMM/MPN+_dom
IPR024969--Rpn11/EIF3F_C

Pfam

PF01398--JAB
PF13012--MitMem_reg

SMART

SM00232--JAB_MPN

Gene Ontology

GO:0005829--C:cytosol
GO:0016282--C:eukaryotic 43S preinitiation complex
GO:0033290--C:eukaryotic 48S preinitiation complex
GO:0071540--C:eukaryotic translation initiation factor 3 complex, eIF3e
GO:0071541--C:eukaryotic translation initiation factor 3 complex, eIF3m
GO:0005634--C:nucleus
GO:0003743--F:translation initiation factor activity
GO:0001731--P:formation of translation preinitiation complex
GO:0006446--P:regulation of translational initiation

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001150	Aegilops tauschii	33.89	4.00e-37	146.00
IUUC-Aml-001527	Ailuropoda melanoleuca	36.13	8.00e-45	172.00
IUUC-Atr-002686	Amborella trichopoda	36.97	1.00e-36	144.00
IUUC-Apl-003977	Anas platyrhynchos	34.78	4.00e-39	152.00
IUUC-Aca-004335	Anolis carolinensis	34.43	4.00e-44	170.00
IUUC-Aly-005945	Arabidopsis lyrata	37.45	2.00e-39	153.00
IUUC-Ath-007045	Arabidopsis thaliana	36.00	3.00e-38	150.00
IUUC-Acl-008365	Aspergillus clavatus	74.68	3.00e-134	469.00
IUUC-Afl-008742	Aspergillus flavus	74.12	3.00e-129	452.00
IUUC-Afu-009030	Aspergillus fumigatus	74.34	6.00e-133	465.00
IUUC-Ani-009212	Aspergillus nidulans	74.04	3.00e-135	473.00
IUUC-Ang-009712	Aspergillus niger	74.67	5.00e-133	465.00
IUUC-Aor-009885	Aspergillus oryzae	74.12	2.00e-135	473.00
IUUC-Ate-010315	Aspergillus terreus	75.33	1.00e-127	447.00
IUUC-Ame-010801	Astyanax mexicanus	29.60	7.00e-26	108.00
IUUC-Bgr-011982	Blumeria graminis	65.36	3.00e-120	422.00
IUUC-Bta-012804	Bos taurus	36.50	3.00e-45	174.00
IUUC-Bci-013891	Botrytis cinerea	70.06	1.00e-124	437.00
IUUC-Bdi-014328	Brachypodium distachyon	32.75	9.00e-35	138.00
IUUC-Bol-015446	Brassica oleracea	36.18	6.00e-42	162.00
IUUC-Bra-016862	Brassica rapa	36.18	6.00e-42	162.00
IUUC-Cel-018171	Caenorhabditis elegans	28.33	3.00e-30	123.00
IUUC-Cja-019335	Callithrix jacchus	36.13	8.00e-45	172.00
IUUC-Cfa-020138	Canis familiaris	36.13	7.00e-45	172.00
IUUC-Cpo-022109	Cavia porcellus	35.23	6.00e-38	149.00
IUUC-Cre-022664	Chlamydomonas reinhardtii	35.64	1.00e-48	184.00
IUUC-Csa-023994	Chlorocebus sabaeus	36.13	7.00e-45	172.00
IUUC-Cho-024351	Choloepus hoffmanni	28.83	1.00e-23	101.00
IUUC-Cin-025801	Ciona intestinalis	36.56	3.00e-47	180.00
IUUC-Csv-025805	Ciona savignyi	35.13	5.00e-46	176.00
IUUC-Cgl-026643	Colletotrichum gloeosporioides	62.83	6.00e-110	388.00
IUUC-Cne-026868	Cryptococcus neoformans	35.14	3.00e-42	163.00
IUUC-Cme-027328	Cyanidioschyzon merolae	24.44	2.00e-12	64.70
IUUC-Dre-028085	Danio rerio	38.18	1.00e-49	187.00
IUUC-Dno-030099	Dasypus novemcinctus	36.13	1.00e-44	171.00
IUUC-Dor-030324	Dipodomys ordii	32.48	2.00e-34	137.00
IUUC-Dme-031926	Drosophila melanogaster	30.94	2.00e-37	147.00
IUUC-Ete-032569	Echinops telfairi	33.58	9.00e-39	151.00
IUUC-Eca-033502	Equus caballus	33.58	2.00e-40	157.00
IUUC-Eeu-034883	Erinaceus europaeus	26.46	3.00e-12	63.20
IUUC-Fca-035873	Felis catus	36.13	8.00e-45	172.00
IUUC-Fal-036921	Ficedula albicollis	36.00	4.00e-47	179.00
IUUC-Fox-037765	Fusarium oxysporum	62.62	1.00e-107	381.00
IUUC-Fso-038240	Fusarium solani	63.28	4.00e-110	389.00
IUUC-Gmo-038864	Gadus morhua	37.73	2.00e-47	181.00
IUUC-Ggr-039862	Gaeumannomyces graminis	59.80	9.00e-99	351.00
IUUC-Gga-040952	Gallus gallus	36.00	5.00e-47	179.00
IUUC-Gac-041677	Gasterosteus aculeatus	34.46	5.00e-47	179.00
IUUC-Gma-043061	Glycine max	36.30	1.00e-34	138.00
IUUC-Ggo-045591	Gorilla gorilla	36.13	7.00e-45	172.00
IUUC-Hsa-046860	Homo sapiens	36.13	7.00e-45	172.00
IUUC-Hvu-047410	Hordeum vulgare	30.71	4.00e-16	75.10
IUUC-Itr-048211	Ictidomys tridecemlineatus	36.13	1.00e-44	172.00
IUUC-Lch-049410	Latimeria chalumnae	34.05	2.00e-26	110.00
IUUC-Lpe-051102	Leersia perrieri	35.45	3.00e-38	150.00
IUUC-Loc-052016	Lepisosteus oculatus	33.21	7.00e-33	132.00
IUUC-Lma-053157	Leptosphaeria maculans	80.50	6.00e-153	531.00
IUUC-Laf-054568	Loxodonta africana	36.13	1.00e-44	171.00
IUUC-Mcc-054613	Macaca mulatta	36.13	7.00e-45	172.00
IUUC-Meu-056832	Macropus eugenii	31.50	2.00e-15	73.90
IUUC-Mor-057104	Magnaporthe oryzae	60.26	2.00e-106	377.00
IUUC-Mtr-058445	Medicago truncatula	37.18	2.00e-45	174.00
IUUC-Mla-059038	Melampsora laricipopulina	40.83	7.00e-56	209.00
IUUC-Mga-059548	Meleagris gallopavo	34.73	1.00e-40	157.00
IUUC-Mvi-060520	Microbotryum violaceum	34.67	8.00e-37	145.00
IUUC-Mdo-062376	Monodelphis domestica	36.00	3.00e-45	173.00
IUUC-Mmu-063254	Mus musculus	36.13	1.00e-44	171.00
IUUC-Mac-065635	Musa acuminata	35.62	5.00e-40	155.00
IUUC-Mpu-066314	Mustela putorius furo	36.13	7.00e-45	172.00
IUUC-Mlu-067512	Myotis lucifugus	35.77	1.00e-44	171.00
IUUC-Nfi-068262	Neosartorya fischeri	74.34	4.00e-133	465.00
IUUC-Ncr-068872	Neurospora crassa	61.18	6.00e-100	355.00
IUUC-Nle-070118	Nomascus leucogenys	36.13	8.00e-45	172.00
IUUC-Opr-071228	Ochotona princeps	34.02	5.00e-39	152.00
IUUC-Ont-072600	Oreochromis niloticus	36.26	2.00e-46	177.00
IUUC-Oan-073584	Ornithorhynchus anatinus	35.15	1.00e-39	154.00
IUUC-Ocu-074542	Oryctolagus cuniculus	36.13	5.00e-45	172.00
IUUC-Oba-075923	Oryza barthii	33.92	4.00e-39	153.00
IUUC-Obr-076313	Oryza brachyantha	36.19	2.00e-40	157.00
IUUC-Ogl-076932	Oryza glaberrima	33.92	4.00e-39	153.00
IUUC-Ogu-078152	Oryza glumaepatula	33.92	4.00e-39	153.00
IUUC-Oin-079528	Oryza indica	33.92	4.00e-39	153.00
IUUC-Olo-080401	Oryza longistaminata	33.92	4.00e-39	153.00
IUUC-Ome-081553	Oryza meridionalis	33.92	3.00e-39	153.00
IUUC-Oni-082090	Oryza nivara	33.92	2.00e-39	154.00
IUUC-Opu-083583	Oryza punctata	35.07	1.00e-37	148.00
IUUC-Oru-084492	Oryza rufipogon	33.92	4.00e-39	153.00
IUUC-Osa-085383	Oryza sativa	33.92	4.00e-39	153.00
IUUC-Ola-086835	Oryzias latipes	36.50	2.00e-46	177.00
IUUC-Olu-087716	Ostreococcus lucimarinus	27.31	3.00e-21	93.60
IUUC-Oga-088886	Otolemur garnettii	36.13	4.00e-45	173.00
IUUC-Oar-090079	Ovis aries	36.50	2.00e-45	174.00
IUUC-Ptr-091457	Pan troglodytes	36.13	7.00e-45	172.00
IUUC-Pan-092317	Papio anubis	31.58	3.00e-21	93.20
IUUC-Psi-093129	Pelodiscus sinensis	33.96	3.00e-41	160.00
IUUC-Pma-094488	Petromyzon marinus	35.69	2.00e-50	190.00
IUUC-Pno-095049	Phaeosphaeria nodorum	82.20	4.00e-154	535.00
IUUC-Ppa-095341	Physcomitrella patens	40.43	4.00e-55	206.00
IUUC-Pfo-096286	Poecilia formosa	36.43	1.00e-47	181.00
IUUC-Pab-097765	Pongo abelii	36.13	7.00e-45	172.00
IUUC-Pop-099131	Populus trichocarpa	36.62	2.00e-43	167.00
IUUC-Pca-100524	Procavia capensis	27.00	4.00e-20	89.40
IUUC-Ppe-101934	Prunus persica	38.32	2.00e-47	180.00
IUUC-Pva-102577	Pteropus vampyrus	35.77	2.00e-44	171.00
IUUC-Pgr-103521	Puccinia graminis	34.78	4.00e-48	182.00
IUUC-Ptt-103773	Puccinia triticina	20.30	3.00e-07	47.40
IUUC-Pte-104304	Pyrenophora teres	82.79	2.00e-154	536.00
IUUC-Pyt-104563	Pyrenophora triticirepentis	82.47	7.00e-154	534.00
IUUC-Rno-105717	Rattus norvegicus	36.13	7.00e-45	172.00
IUUC-Sha-107190	Sarcophilus harrisii	36.33	3.00e-44	170.00
IUUC-Sja-107918	Schizosaccharomyces japonicus	50.67	8.00e-88	315.00
IUUC-Spo-108355	Schizosaccharomyces pombe	49.35	3.00e-89	319.00
IUUC-Smo-109374	Selaginella moellendorffii	39.64	1.00e-52	197.00
IUUC-Sit-110119	Setaria italica	35.04	3.00e-39	153.00
IUUC-Sly-111570	Solanum lycopersicum	33.07	7.00e-36	142.00
IUUC-Stu-112308	Solanum tuberosum	34.24	1.00e-40	157.00
IUUC-Sbi-114605	Sorghum bicolor	35.04	4.00e-40	157.00
IUUC-Sre-114906	Sporisorium reilianum	46.96	1.00e-65	241.00
IUUC-Tgu-117087	Taeniopygia guttata	35.12	6.00e-40	155.00
IUUC-Tru-117700	Takifugu rubripes	35.04	6.00e-46	175.00
IUUC-Tni-120470	Tetraodon nigroviridis	35.04	2.00e-46	177.00
IUUC-Tca-121109	Theobroma cacao	38.25	6.00e-39	152.00
IUUC-Tre-122095	Trichoderma reesei	63.49	1.00e-108	384.00
IUUC-Tvi-122580	Trichoderma virens	63.49	2.00e-108	384.00
IUUC-Tae-125129	Triticum aestivum	35.87	3.00e-40	157.00
IUUC-Tur-126658	Triticum urartu	32.73	2.00e-33	134.00
IUUC-Tme-127043	Tuber melanosporum	66.67	1.00e-120	423.00
IUUC-Tbe-127927	Tupaia belangeri	36.13	8.00e-45	172.00
IUUC-Ttr-129231	Tursiops truncatus	36.50	3.00e-45	173.00
IUUC-Uma-129578	Ustilago maydis	47.62	1.00e-66	244.00
IUUC-Vda-129730	Verticillium dahliae	61.15	1.00e-114	404.00
IUUC-Vvi-130968	Vitis vinifera	36.64	1.00e-42	164.00
IUUC-Xtr-132203	Xenopus tropicalis	37.36	3.00e-47	179.00
IUUC-Xma-133972	Xiphophorus maculatus	37.36	5.00e-47	179.00
IUUC-Yli-134553	Yarrowia lipolytica	49.12	9.00e-74	268.00
IUUC-Zma-134941	Zea mays	33.94	2.00e-33	134.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence