iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007423

Ensembl Protein ID

AT2G40810.2

UniProt Accession

Q8GYD7; O22195; AT18C_ARATH

Genbank Protein ID

AAB86441.1; AEC09882.1; AEC09883.1; BAC42353.1; ABI49460.1

Protein Name

Autophagy-related protein 18c

Genbank Nucleotide ID

AC002409; CP002685; CP002685; AK117701; BT028913

Gene Name

ATG18C; At2g40810; T20B5.1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT2G40810	AT2G40810.2	AT2G40810.2
AT2G40810	AT2G40810.3	AT2G40810.3

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.70e-07	31.1	247	276

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 4    dsvtclaf.sd.tllvsGsdDgtikvWDlr 31
           ++++++a+ ++   l+++sd gt+++++lr
   Q: 247  ADIYSIALsPNvQWLAVSSDKGTVHIFSLR 276
           579******99999*************986 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

The PI(3,5)P2 regulatory complex regulates both the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). Required for autophagy (By similarity).

Protein Sequence
(Fasta)

MSSTVSNPQG ILQPGSFLLP ESESMKKEEA ELVSVCWNQD SSCFAAGTSH GFRIYNCEPF 60
KETFRRELKD GGFKIVEMLF RSNILALVGG GPNSQYPSSK VLIWDDHQSR CISEFAFRSE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTCATTTTGA GAAAAATCAG CAACTCTGGA GAGAGCGTGT TCGTCATTGA AATCGAAGCT 60
TGGAGATTCA ATATTTCTTC GATCTCGTGT TCTTCGTCTC GTTTCGTCGG TGAGAATCCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0072--Autophagy
KW-0181--Complete proteome
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0677--Repeat
KW-0813--Transport
KW-0926--Vacuole
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0034045--C:pre-autophagosomal structure membrane
GO:0005774--C:vacuolar membrane
GO:0006914--P:autophagy
GO:0015031--P:protein transport

KEGG

ath:AT2G40810

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002710	Amborella trichopoda	70.42	1.00e-156	545.00
IUUC-Apl-003741	Anas platyrhynchos	41.93	7.00e-57	213.00
IUUC-Aly-006355	Arabidopsis lyrata	92.04	0.00e+00	733.00
IUUC-Acl-008148	Aspergillus clavatus	30.92	6.00e-43	167.00
IUUC-Afl-008562	Aspergillus flavus	30.81	6.00e-42	164.00
IUUC-Afu-008936	Aspergillus fumigatus	31.34	2.00e-43	169.00
IUUC-Ani-009254	Aspergillus nidulans	30.73	3.00e-43	168.00
IUUC-Aor-010066	Aspergillus oryzae	30.81	6.00e-42	164.00
IUUC-Ate-010266	Aspergillus terreus	31.63	2.00e-45	175.00
IUUC-Cel-018503	Caenorhabditis elegans	33.82	3.00e-33	135.00
IUUC-Cfa-020539	Canis familiaris	42.20	9.00e-56	209.00
IUUC-Cgl-026425	Colletotrichum gloeosporioides	35.29	4.00e-14	71.60
IUUC-Ete-032303	Echinops telfairi	36.67	8.00e-48	183.00
IUUC-Fca-035675	Felis catus	42.54	7.00e-59	220.00
IUUC-Gma-043390	Glycine max	71.71	3.00e-164	570.00
IUUC-Kpa-049378	Komagataella pastoris	33.57	7.00e-42	164.00
IUUC-Loc-052379	Lepisosteus oculatus	41.81	4.00e-57	214.00
IUUC-Laf-054084	Loxodonta africana	41.01	5.00e-60	223.00
IUUC-Mvi-060219	Microbotryum violaceum	38.46	8.00e-44	170.00
IUUC-Opr-070933	Ochotona princeps	44.59	5.00e-27	114.00
IUUC-Psi-093258	Pelodiscus sinensis	41.37	3.00e-57	214.00
IUUC-Pca-100176	Procavia capensis	32.97	2.00e-42	165.00
IUUC-Ppe-101799	Prunus persica	72.86	8.00e-167	578.00
IUUC-Pyt-104488	Pyrenophora triticirepentis	34.59	4.00e-36	144.00
IUUC-Sja-107791	Schizosaccharomyces japonicus	34.71	3.00e-42	165.00
IUUC-Ssl-108418	Sclerotinia sclerotiorum	35.05	8.00e-44	170.00
IUUC-Tsy-119533	Tarsius syrichta	38.12	2.00e-25	108.00
IUUC-Tca-121732	Theobroma cacao	81.03	4.00e-168	583.00
IUUC-Vda-129980	Verticillium dahliae	32.00	1.00e-39	156.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence