iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ome-081834

Ensembl Protein ID

OMERI07G17930.2

UniProt Accession

A0A0E0EE34; A0A0E0EE34_9ORYZ

Protein Name

Ribosome biogenesis protein WDR12 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
OMERI07G17930	OMERI07G17930.1	OMERI07G17930.1
OMERI07G17930	OMERI07G17930.2	OMERI07G17930.2
OMERI07G17930	OMERI07G17930.4	OMERI07G17930.4

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.70e-36	122.5	340	375
UBD/Beta-Prp	7.20e-42	144.5	332	493

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclafsd.tllvsGsdDgtikvWDlrtgvl 35
           gHt  v+++ +++  ++ s+s+D+++++WD+ tg+ 
   Q: 340  GHTQCVSAVTWPErQTIYSASWDHSVRLWDVQTGKE 375
           8**********88899****************9986 PP

UBD/Beta-Prp

   S: 84   gkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdl.ktgkllrtl 175
           g+ ++t+ gh++ v ++++ + ++++ s+s+d  +r+wd++tg++    + +  ++ nc+   +++ +l+++G+ D ++r+Wd  k g+l   +
   Q: 332  GSATSTFLGHTQCVSAVTWPE-RQTIYSASWDHSVRLWDVQTGKET--WNMVSGKALNCLDCGGESsSLIAAGGSDPVLRVWDPrKPGTLAPIF 422
           67899**************88.***********************9..699***************9****************96556776666 PP
   S: 176  ..tgghtdsvyslsfdsng.kelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgs 245
             ++ h++ +   ++++++ ++lvs s dg+v lwdl+t   + +++ h+d v++ + + +++ ++sg++D  
   Q: 423  qfSS-HKSWISACKWHPSSwFHLVSSSFDGKVMLWDLRTAWPLASVESHKDKVLCADWW-KGDSVISGGADSK 493
           5477.******************************************************.8999999999976 PP

Organism

Oryza meridionalis

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MDIFSSPGRL CLERAVTATG PHILQNPNQI NSPFETLPKP PFPLPAAAAA AASSSSSSPP 60
ASAASAAMDS GGASDPSRQV RVRFVTKLPA PLRAPPTSIA VPADLTRMGL SEIVNSLLLA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TGGTAAGGTT TATTTTGGCT ATAATCCGAA CAACCCCTAT AATAACTTAA ACCAGTTTAG 60
AGTTGCCGTT GAAGGCATTT AGAATTTGCG AAATAAACGA CGATTGCTCA AAGTTGAATT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0009506--C:plasmodesma
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	85.65	0.00e+00	766.00
IUUC-Aml-001997	Ailuropoda melanoleuca	35.84	3.00e-56	211.00
IUUC-Atr-002544	Amborella trichopoda	63.57	6.00e-164	569.00
IUUC-Apl-003981	Anas platyrhynchos	34.93	2.00e-58	219.00
IUUC-Aca-004370	Anolis carolinensis	34.93	1.00e-65	243.00
IUUC-Aly-006455	Arabidopsis lyrata	63.26	5.00e-168	583.00
IUUC-Ath-006669	Arabidopsis thaliana	62.93	3.00e-164	570.00
IUUC-Ago-007864	Ashbya gossypii	30.72	4.00e-45	174.00
IUUC-Acl-008177	Aspergillus clavatus	29.68	3.00e-42	165.00
IUUC-Afl-008617	Aspergillus flavus	30.97	5.00e-38	151.00
IUUC-Afu-008752	Aspergillus fumigatus	30.02	6.00e-39	154.00
IUUC-Ani-009136	Aspergillus nidulans	30.56	8.00e-40	157.00
IUUC-Ang-009701	Aspergillus niger	29.60	1.00e-36	147.00
IUUC-Aor-009884	Aspergillus oryzae	30.97	3.00e-38	152.00
IUUC-Ate-010472	Aspergillus terreus	26.19	2.00e-12	65.50
IUUC-Ame-011432	Astyanax mexicanus	35.08	2.00e-67	248.00
IUUC-Bgr-012218	Blumeria graminis	29.13	6.00e-38	150.00
IUUC-Bta-012829	Bos taurus	34.61	3.00e-57	215.00
IUUC-Bci-013953	Botrytis cinerea	29.14	2.00e-39	156.00
IUUC-Bdi-014351	Brachypodium distachyon	85.02	0.00e+00	741.00
IUUC-Bol-016514	Brassica oleracea	63.13	1.00e-155	541.00
IUUC-Bra-016988	Brassica rapa	63.36	2.00e-156	544.00
IUUC-Cel-018569	Caenorhabditis elegans	24.94	4.00e-27	114.00
IUUC-Cja-019468	Callithrix jacchus	35.08	2.00e-55	209.00
IUUC-Cfa-020471	Canis familiaris	34.21	3.00e-55	208.00
IUUC-Cpo-022260	Cavia porcellus	36.04	2.00e-57	215.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	38.61	2.00e-65	241.00
IUUC-Csa-023989	Chlorocebus sabaeus	34.84	2.00e-55	209.00
IUUC-Cho-024426	Choloepus hoffmanni	33.99	5.00e-42	164.00
IUUC-Cin-025789	Ciona intestinalis	32.27	3.00e-53	201.00
IUUC-Cgl-026562	Colletotrichum gloeosporioides	30.34	7.00e-07	46.20
IUUC-Cne-027063	Cryptococcus neoformans	26.29	7.00e-27	114.00
IUUC-Dre-027907	Danio rerio	35.41	7.00e-68	250.00
IUUC-Dno-029225	Dasypus novemcinctus	35.08	6.00e-58	217.00
IUUC-Dor-031082	Dipodomys ordii	33.33	5.00e-25	107.00
IUUC-Dse-031308	Dothistroma septosporum	36.47	5.00e-54	204.00
IUUC-Dme-032189	Drosophila melanogaster	29.14	2.00e-45	175.00
IUUC-Ete-032247	Echinops telfairi	33.65	3.00e-51	194.00
IUUC-Eca-034285	Equus caballus	34.61	2.00e-56	212.00
IUUC-Eeu-035322	Erinaceus europaeus	30.52	2.00e-46	179.00
IUUC-Fca-036114	Felis catus	34.84	1.00e-56	213.00
IUUC-Fal-036891	Ficedula albicollis	35.03	4.00e-52	197.00
IUUC-Fox-037965	Fusarium oxysporum	27.22	9.00e-33	134.00
IUUC-Fso-038244	Fusarium solani	27.23	1.00e-35	143.00
IUUC-Gmo-039040	Gadus morhua	35.17	2.00e-68	252.00
IUUC-Ggr-040093	Gaeumannomyces graminis	24.68	3.00e-29	122.00
IUUC-Gga-040610	Gallus gallus	34.69	2.00e-63	235.00
IUUC-Gac-042117	Gasterosteus aculeatus	34.44	1.00e-65	242.00
IUUC-Gma-043756	Glycine max	63.93	2.00e-166	577.00
IUUC-Ggo-045179	Gorilla gorilla	34.61	5.00e-55	207.00
IUUC-Hsa-046114	Homo sapiens	34.84	2.00e-55	209.00
IUUC-Hvu-047331	Hordeum vulgare	84.17	0.00e+00	673.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	35.32	9.00e-58	216.00
IUUC-Kpa-049304	Komagataella pastoris	29.36	6.00e-46	177.00
IUUC-Lch-050655	Latimeria chalumnae	31.69	4.00e-43	167.00
IUUC-Lpe-051675	Leersia perrieri	95.40	0.00e+00	844.00
IUUC-Loc-052868	Lepisosteus oculatus	34.52	1.00e-66	246.00
IUUC-Lma-053258	Leptosphaeria maculans	32.53	1.00e-45	178.00
IUUC-Laf-053993	Loxodonta africana	35.08	9.00e-58	216.00
IUUC-Mcc-055128	Macaca mulatta	27.92	9.00e-34	136.00
IUUC-Meu-056501	Macropus eugenii	35.31	1.00e-49	189.00
IUUC-Mor-057114	Magnaporthe oryzae	30.74	3.00e-41	161.00
IUUC-Mpo-057463	Magnaporthe poae	33.93	5.00e-19	86.70
IUUC-Mtr-058367	Medicago truncatula	62.21	6.00e-156	543.00
IUUC-Mla-059107	Melampsora laricipopulina	26.39	2.00e-37	149.00
IUUC-Mga-059745	Meleagris gallopavo	35.41	6.00e-62	230.00
IUUC-Mvi-060362	Microbotryum violaceum	25.37	7.00e-32	130.00
IUUC-Mdo-062257	Monodelphis domestica	35.87	3.00e-63	234.00
IUUC-Mmu-063546	Mus musculus	33.73	8.00e-57	213.00
IUUC-Mac-065540	Musa acuminata	71.29	0.00e+00	634.00
IUUC-Mpu-066284	Mustela putorius furo	34.84	3.00e-57	215.00
IUUC-Mlu-067241	Myotis lucifugus	35.32	7.00e-58	217.00
IUUC-Nfi-068260	Neosartorya fischeri	29.98	9.00e-42	163.00
IUUC-Ncr-068719	Neurospora crassa	30.77	5.00e-35	141.00
IUUC-Nle-068981	Nomascus leucogenys	35.08	2.00e-54	206.00
IUUC-Opr-071218	Ochotona princeps	33.00	3.00e-53	201.00
IUUC-Ont-071646	Oreochromis niloticus	33.97	3.00e-60	224.00
IUUC-Oan-073453	Ornithorhynchus anatinus	34.28	4.00e-66	244.00
IUUC-Ocu-074008	Oryctolagus cuniculus	35.32	4.00e-58	217.00
IUUC-Oba-075712	Oryza barthii	84.25	0.00e+00	773.00
IUUC-Obr-076721	Oryza brachyantha	91.99	0.00e+00	825.00
IUUC-Ogl-077229	Oryza glaberrima	98.39	0.00e+00	879.00
IUUC-Ogu-078977	Oryza glumaepatula	83.46	0.00e+00	780.00
IUUC-Oin-079683	Oryza indica	98.39	0.00e+00	880.00
IUUC-Olo-080291	Oryza longistaminata	74.05	5.00e-149	519.00
IUUC-Oni-082507	Oryza nivara	95.65	0.00e+00	842.00
IUUC-Opu-083396	Oryza punctata	93.64	0.00e+00	918.00
IUUC-Oru-085220	Oryza rufipogon	95.65	0.00e+00	842.00
IUUC-Osa-085767	Oryza sativa	98.39	0.00e+00	880.00
IUUC-Ola-087420	Oryzias latipes	34.53	6.00e-68	250.00
IUUC-Olu-087740	Ostreococcus lucimarinus	33.80	3.00e-64	238.00
IUUC-Oga-088264	Otolemur garnettii	34.61	1.00e-54	206.00
IUUC-Oar-089335	Ovis aries	34.84	9.00e-58	216.00
IUUC-Ptr-091320	Pan troglodytes	34.84	2.00e-55	209.00
IUUC-Pan-092833	Papio anubis	35.08	1.00e-55	209.00
IUUC-Psi-093504	Pelodiscus sinensis	33.41	3.00e-58	218.00
IUUC-Pma-094189	Petromyzon marinus	35.22	6.00e-63	233.00
IUUC-Pno-094929	Phaeosphaeria nodorum	30.51	1.00e-43	169.00
IUUC-Ppa-095429	Physcomitrella patens	51.60	2.00e-126	445.00
IUUC-Pfo-096337	Poecilia formosa	35.89	2.00e-67	249.00
IUUC-Pab-097571	Pongo abelii	34.84	2.00e-55	208.00
IUUC-Pop-099977	Populus trichocarpa	65.65	3.00e-167	580.00
IUUC-Pca-100394	Procavia capensis	33.83	1.00e-46	179.00
IUUC-Ppe-101848	Prunus persica	61.96	2.00e-166	577.00
IUUC-Pva-102921	Pteropus vampyrus	33.63	4.00e-24	104.00
IUUC-Pgr-103637	Puccinia graminis	26.23	5.00e-35	141.00
IUUC-Ptt-103781	Puccinia triticina	26.65	4.00e-34	138.00
IUUC-Pte-104135	Pyrenophora teres	30.96	5.00e-43	169.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	30.79	9.00e-45	173.00
IUUC-Rno-105114	Rattus norvegicus	33.97	3.00e-56	211.00
IUUC-Sce-106401	Saccharomyces cerevisiae	30.25	5.00e-45	174.00
IUUC-Sha-107122	Sarcophilus harrisii	35.53	3.00e-62	231.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	29.28	3.00e-41	161.00
IUUC-Spo-108134	Schizosaccharomyces pombe	28.92	8.00e-41	160.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	29.46	1.00e-43	170.00
IUUC-Smo-108720	Selaginella moellendorffii	49.53	6.00e-120	423.00
IUUC-Sit-110354	Setaria italica	85.68	0.00e+00	764.00
IUUC-Sly-111023	Solanum lycopersicum	57.38	8.00e-152	529.00
IUUC-Stu-112778	Solanum tuberosum	63.84	2.00e-162	564.00
IUUC-Sar-113596	Sorex araneus	31.45	1.00e-42	166.00
IUUC-Sbi-114193	Sorghum bicolor	83.10	0.00e+00	710.00
IUUC-Sre-115002	Sporisorium reilianum	29.60	4.00e-18	85.50
IUUC-Ssc-116066	Sus scrofa	34.84	4.00e-57	214.00
IUUC-Tgu-117048	Taeniopygia guttata	35.47	6.00e-59	220.00
IUUC-Tni-119820	Tetraodon nigroviridis	36.52	1.00e-63	236.00
IUUC-Tca-121605	Theobroma cacao	64.53	1.00e-169	588.00
IUUC-Tre-121947	Trichoderma reesei	26.95	3.00e-35	141.00
IUUC-Tvi-122481	Trichoderma virens	26.93	9.00e-35	140.00
IUUC-Tae-123504	Triticum aestivum	85.88	0.00e+00	768.00
IUUC-Tur-126586	Triticum urartu	85.93	0.00e+00	709.00
IUUC-Tme-126900	Tuber melanosporum	31.31	4.00e-52	197.00
IUUC-Tbe-127736	Tupaia belangeri	35.06	1.00e-21	96.70
IUUC-Ttr-129041	Tursiops truncatus	30.31	1.00e-39	156.00
IUUC-Uma-129628	Ustilago maydis	26.92	1.00e-10	60.50
IUUC-Vpa-130260	Vicugna pacos	34.84	3.00e-57	214.00
IUUC-Vvi-131009	Vitis vinifera	67.66	2.00e-179	621.00
IUUC-Xtr-132083	Xenopus tropicalis	35.89	9.00e-63	233.00
IUUC-Xma-133094	Xiphophorus maculatus	34.53	5.00e-66	244.00
IUUC-Yli-134531	Yarrowia lipolytica	27.82	2.00e-31	129.00
IUUC-Zma-135509	Zea mays	83.56	0.00e+00	743.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence