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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Rno-105689
UUCD1 version UUC-RaN-00220
Ensembl Protein ID ENSRNOP00000015100.5
UniProt Accession D3ZN63; D3ZN63_RAT
Genbank Protein ID EDL88346.1
Protein Name WD repeat and HMG-box DNA binding protein 1 (Predicted); WD repeat and HMG-box DNA-binding protein 1
Genbank Nucleotide ID AABR07017499
Gene Name Wdhd1; Wdhd1_predicted; rCG_61246
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000011167.6 ENSRNOT00000015100.5 ENSRNOP00000015100.5
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
TRANSFACRAID2
Protein-protein Interaction
IID
Post-translational Modifications (PTMs)
CPLMdbPAF
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 2.10e-17 62.9 134 171
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlrtgvll 36
           gH ++v +l+f   d +l+s+s Dgt++vW+++++++ 
   Q: 134  GHDAPVLSLSFdpKDVFLASASCDGTVRVWNISDQTCA 171
           8**********954499**************9999885 PP
   
Organism Rattus norvegicus
Protein Sequence
(Fasta)
MPAIQKPMRY GHTEGHTEVC FDDSGSFIVT CGSDGDVRMW EDLDDDDPKS VNVGEKAFSC 60
ALKNGKLVTA VSNNTVQVYT FPEGAPDGIL TRFTTNANHV VFNGDGTKIA AGSSDFLVKV 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Rno-105689|E3,WD_repeat|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
AAGCGGCTCT GTGCGGCGAG ACGCTCGTGC ACCCGGGCTG CTCTTAGTTC GCGTTTCCCA 60
ATCCTGCAGA GGAGAAGCTT GTCACCTCCC CGGGCGTATG TGACATACCC TCCGCCGCAT 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Rno-105689|E3,WD_repeat|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0238--DNA-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat
Interpro

IPR024977--Apc4_WD40_dom
IPR009071--HMG_box_dom
IPR022100--Mcl1_mid
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS50118--HMG_BOX_2
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF12894--ANAPC4_WD40
PF00505--HMG_box
PF12341--Mcl1_mid
PF00400--WD40
SMART

SM00398--HMG
SM00320--WD40
Gene Ontology

GO:0005634--C:nucleus
GO:0003677--F:DNA binding
KEGG rno:305827
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000357 Aegilops tauschii 30.10 7.00e-76 278.00
IUUC-Aml-001369 Ailuropoda melanoleuca 80.07 0.00e+00 1786.00
IUUC-Atr-002987 Amborella trichopoda 30.01 3.00e-81 296.00
IUUC-Apl-003331 Anas platyrhynchos 65.41 0.00e+00 1429.00
IUUC-Aca-004285 Anolis carolinensis 65.10 0.00e+00 1399.00
IUUC-Aly-005907 Arabidopsis lyrata 29.73 1.00e-66 248.00
IUUC-Ath-007037 Arabidopsis thaliana 30.03 6.00e-66 245.00
IUUC-Acl-008185 Aspergillus clavatus 22.59 2.00e-48 187.00
IUUC-Afl-008630 Aspergillus flavus 21.56 3.00e-51 197.00
IUUC-Afu-008921 Aspergillus fumigatus 23.11 6.00e-55 209.00
IUUC-Ani-009243 Aspergillus nidulans 22.04 1.00e-49 191.00
IUUC-Ang-009860 Aspergillus niger 22.01 1.00e-43 171.00
IUUC-Aor-010029 Aspergillus oryzae 21.56 3.00e-51 197.00
IUUC-Ate-010570 Aspergillus terreus 22.62 3.00e-54 206.00
IUUC-Bgr-012205 Blumeria graminis 22.50 1.00e-49 191.00
IUUC-Bta-012495 Bos taurus 80.07 0.00e+00 1751.00
IUUC-Bci-013848 Botrytis cinerea 22.85 2.00e-44 174.00
IUUC-Bdi-014162 Brachypodium distachyon 29.50 1.00e-79 291.00
IUUC-Bol-015828 Brassica oleracea 28.05 6.00e-62 232.00
IUUC-Bra-016792 Brassica rapa 28.30 2.00e-60 227.00
IUUC-Cja-018995 Callithrix jacchus 79.91 0.00e+00 1773.00
IUUC-Cfa-020713 Canis familiaris 79.92 0.00e+00 1623.00
IUUC-Cpo-021596 Cavia porcellus 73.32 0.00e+00 1568.00
IUUC-Cre-022785 Chlamydomonas reinhardtii 29.51 7.00e-20 93.20
IUUC-Csa-024080 Chlorocebus sabaeus 80.63 0.00e+00 1703.00
IUUC-Cho-024295 Choloepus hoffmanni 72.14 6.00e-180 624.00
IUUC-Cin-025123 Ciona intestinalis 47.37 1.00e-108 387.00
IUUC-Csv-025859 Ciona savignyi 46.90 2.00e-106 380.00
IUUC-Cgl-026546 Colletotrichum gloeosporioides 26.48 4.00e-23 103.00
IUUC-Cne-026873 Cryptococcus neoformans 27.99 5.00e-40 160.00
IUUC-Dre-028752 Danio rerio 74.81 0.00e+00 632.00
IUUC-Dno-029844 Dasypus novemcinctus 78.53 0.00e+00 1326.00
IUUC-Dse-031515 Dothistroma septosporum 24.91 7.00e-53 202.00
IUUC-Dme-031614 Drosophila melanogaster 30.86 1.00e-99 357.00
IUUC-Ete-032291 Echinops telfairi 79.47 2.00e-142 500.00
IUUC-Eca-033665 Equus caballus 79.66 0.00e+00 1802.00
IUUC-Eeu-035036 Erinaceus europaeus 69.22 0.00e+00 757.00
IUUC-Fca-036209 Felis catus 80.76 0.00e+00 1813.00
IUUC-Fal-037229 Ficedula albicollis 63.88 0.00e+00 1427.00
IUUC-Fox-037686 Fusarium oxysporum 25.17 5.00e-28 118.00
IUUC-Fso-038120 Fusarium solani 26.51 3.00e-29 124.00
IUUC-Gmo-039627 Gadus morhua 55.78 4.00e-163 568.00
IUUC-Ggr-040058 Gaeumannomyces graminis 24.07 3.00e-45 177.00
IUUC-Gga-040825 Gallus gallus 66.04 0.00e+00 1444.00
IUUC-Gac-042000 Gasterosteus aculeatus 56.26 0.00e+00 903.00
IUUC-Gma-044023 Glycine max 28.17 1.00e-72 268.00
IUUC-Ggo-044531 Gorilla gorilla 80.60 0.00e+00 1800.00
IUUC-Hsa-046362 Homo sapiens 81.33 0.00e+00 1789.00
IUUC-Hvu-047719 Hordeum vulgare 29.71 3.00e-75 276.00
IUUC-Itr-048089 Ictidomys tridecemlineatus 81.12 0.00e+00 741.00
IUUC-Lch-050106 Latimeria chalumnae 59.20 0.00e+00 1253.00
IUUC-Lpe-050996 Leersia perrieri 29.43 1.00e-78 288.00
IUUC-Loc-051766 Lepisosteus oculatus 58.52 0.00e+00 755.00
IUUC-Lma-053144 Leptosphaeria maculans 26.33 1.00e-20 95.50
IUUC-Laf-054285 Loxodonta africana 80.11 0.00e+00 1734.00
IUUC-Mcc-054702 Macaca mulatta 81.74 0.00e+00 1769.00
IUUC-Meu-056634 Macropus eugenii 61.18 4.00e-180 625.00
IUUC-Mor-057040 Magnaporthe oryzae 22.74 9.00e-48 185.00
IUUC-Mpo-057395 Magnaporthe poae 26.47 4.00e-25 110.00
IUUC-Mtr-057830 Medicago truncatula 27.41 2.00e-71 264.00
IUUC-Mla-059152 Melampsora laricipopulina 22.52 3.00e-38 154.00
IUUC-Mga-059492 Meleagris gallopavo 66.29 0.00e+00 1423.00
IUUC-Mvi-060303 Microbotryum violaceum 27.48 7.00e-38 153.00
IUUC-Mmr-061066 Microcebus murinus 79.75 0.00e+00 1766.00
IUUC-Mdo-062039 Monodelphis domestica 69.81 0.00e+00 1542.00
IUUC-Mmu-063620 Mus musculus 91.60 0.00e+00 2027.00
IUUC-Mac-065638 Musa acuminata 29.34 9.00e-80 291.00
IUUC-Mpu-066212 Mustela putorius furo 76.39 0.00e+00 1729.00
IUUC-Mlu-068167 Myotis lucifugus 80.09 0.00e+00 1736.00
IUUC-Nfi-068338 Neosartorya fischeri 23.23 1.00e-55 211.00
IUUC-Ncr-068798 Neurospora crassa 25.09 3.00e-25 110.00
IUUC-Nle-069987 Nomascus leucogenys 80.46 0.00e+00 1768.00
IUUC-Opr-070369 Ochotona princeps 81.23 3.00e-124 439.00
IUUC-Ont-072317 Oreochromis niloticus 57.74 0.00e+00 1181.00
IUUC-Oan-073516 Ornithorhynchus anatinus 81.27 5.00e-137 479.00
IUUC-Ocu-074529 Oryctolagus cuniculus 80.43 0.00e+00 1811.00
IUUC-Oba-075044 Oryza barthii 29.13 1.00e-71 265.00
IUUC-Obr-076499 Oryza brachyantha 29.43 4.00e-70 259.00
IUUC-Ogl-077757 Oryza glaberrima 28.48 1.00e-71 265.00
IUUC-Ogu-078878 Oryza glumaepatula 29.39 1.00e-71 265.00
IUUC-Oin-079900 Oryza indica 28.75 5.00e-72 266.00
IUUC-Olo-080741 Oryza longistaminata 28.75 7.00e-72 265.00
IUUC-Ome-081734 Oryza meridionalis 29.52 3.00e-72 267.00
IUUC-Oni-082656 Oryza nivara 29.27 8.00e-72 265.00
IUUC-Opu-083312 Oryza punctata 28.96 2.00e-73 270.00
IUUC-Oru-084507 Oryza rufipogon 28.74 5.00e-72 266.00
IUUC-Osa-085329 Oryza sativa 28.39 2.00e-64 241.00
IUUC-Ola-086433 Oryzias latipes 62.90 0.00e+00 1037.00
IUUC-Olu-087690 Ostreococcus lucimarinus 27.78 5.00e-37 149.00
IUUC-Oga-088410 Otolemur garnettii 76.09 0.00e+00 1633.00
IUUC-Oar-089993 Ovis aries 80.07 0.00e+00 1762.00
IUUC-Ptr-091145 Pan troglodytes 81.15 0.00e+00 1790.00
IUUC-Pan-092500 Papio anubis 81.15 0.00e+00 1761.00
IUUC-Psi-093984 Pelodiscus sinensis 67.69 0.00e+00 1483.00
IUUC-Pma-094567 Petromyzon marinus 50.94 0.00e+00 650.00
IUUC-Pno-095002 Phaeosphaeria nodorum 24.83 2.00e-18 87.80
IUUC-Pfo-097387 Poecilia formosa 70.74 0.00e+00 629.00
IUUC-Pab-097803 Pongo abelii 81.31 0.00e+00 1757.00
IUUC-Pop-099165 Populus trichocarpa 28.99 1.00e-71 265.00
IUUC-Pca-100989 Procavia capensis 62.05 6.00e-150 525.00
IUUC-Ppe-102022 Prunus persica 29.43 2.00e-72 267.00
IUUC-Pva-102389 Pteropus vampyrus 73.81 0.00e+00 1639.00
IUUC-Pgr-103635 Puccinia graminis 23.31 4.00e-47 183.00
IUUC-Ptt-103730 Puccinia triticina 22.90 5.00e-45 176.00
IUUC-Pte-104320 Pyrenophora teres 22.96 5.00e-37 149.00
IUUC-Pyt-104622 Pyrenophora triticirepentis 23.11 3.00e-35 144.00
IUUC-Sha-107448 Sarcophilus harrisii 70.81 0.00e+00 1510.00
IUUC-Sja-107702 Schizosaccharomyces japonicus 26.06 4.00e-51 196.00
IUUC-Spo-108360 Schizosaccharomyces pombe 25.72 4.00e-51 196.00
IUUC-Ssl-108529 Sclerotinia sclerotiorum 23.00 8.00e-45 175.00
IUUC-Smo-109337 Selaginella moellendorffii 29.54 3.00e-70 259.00
IUUC-Sit-110790 Setaria italica 28.85 2.00e-66 247.00
IUUC-Sly-111470 Solanum lycopersicum 29.23 8.00e-74 272.00
IUUC-Stu-111945 Solanum tuberosum 27.48 6.00e-74 272.00
IUUC-Sar-113075 Sorex araneus 68.64 0.00e+00 1279.00
IUUC-Sbi-114822 Sorghum bicolor 30.58 1.00e-67 251.00
IUUC-Sre-114913 Sporisorium reilianum 22.60 9.00e-35 142.00
IUUC-Ssc-116073 Sus scrofa 77.72 0.00e+00 1534.00
IUUC-Tgu-117253 Taeniopygia guttata 71.62 0.00e+00 1214.00
IUUC-Tru-117741 Takifugu rubripes 64.28 0.00e+00 1046.00
IUUC-Tsy-118834 Tarsius syrichta 83.64 0.00e+00 691.00
IUUC-Tni-120726 Tetraodon nigroviridis 54.03 0.00e+00 1142.00
IUUC-Tca-121655 Theobroma cacao 29.41 7.00e-80 292.00
IUUC-Tre-121921 Trichoderma reesei 24.24 3.00e-24 107.00
IUUC-Tvi-122540 Trichoderma virens 22.79 2.00e-22 101.00
IUUC-Tae-123766 Triticum aestivum 30.05 9.00e-78 285.00
IUUC-Tur-126398 Triticum urartu 29.84 2.00e-74 273.00
IUUC-Tme-127075 Tuber melanosporum 23.44 2.00e-53 204.00
IUUC-Tbe-128002 Tupaia belangeri 80.25 1.00e-154 540.00
IUUC-Ttr-129101 Tursiops truncatus 80.37 0.00e+00 1638.00
IUUC-Uma-129374 Ustilago maydis 22.85 4.00e-21 97.40
IUUC-Vda-129719 Verticillium dahliae 24.34 1.00e-23 105.00
IUUC-Vpa-130039 Vicugna pacos 78.78 0.00e+00 1746.00
IUUC-Vvi-131442 Vitis vinifera 28.27 2.00e-63 237.00
IUUC-Xtr-132599 Xenopus tropicalis 60.44 0.00e+00 1325.00
IUUC-Xma-132991 Xiphophorus maculatus 57.34 0.00e+00 1176.00
IUUC-Zma-135846 Zea mays 29.04 2.00e-73 270.00
Created Date 25-Jun-2017

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