iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Cgl-026393

Ensembl Protein ID

ELA23172

UniProt Accession

L2FA03; L2FA03_COLGN

Genbank Protein ID

ELA23172.1

Protein Name

Ribosome biogenesis protein ERB1; Eukaryotic ribosome biogenesis protein 1

Genbank Nucleotide ID

KB021435

Gene Name

ERB1; CGGC5_2542

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
CGGC5_2542	ELA23172	ELA23172

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	8.30e-17	60.3	415	452

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
           gH+++v++ a  +d   l+sG+dDgti++W lrtg+++
   Q: 415  GHEGRVRSAAIsPDgEWLASGGDDGTIRLWHLRTGRQE 452
           8***********999********************987 PP

Organism

Colletotrichum gloeosporioides

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MAPRQALGKR KEPQAAAAPV EEEFGNATLE GILSQSEDDS DYAESSGDEA ELNGDLSEDE 60
DEDEEDILSD DIPSDGEDQD VSAKLKATKL SAANGDDEPN YRVVTDANGN ERYEYDEIDP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCTCCAC GACAAGCGTT AGGCAAGCGG AAGGAACCGC AGGCGGCTGC TGCTCCTGTC 60
GAGGAGGAAT TCGGCAATGC AACGTTGGAG GGCATCCTGT CTCAGAGCGA GGATGATTCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08145--BOP1NT
PF00400--WD40

SMART

SM01035--BOP1NT
SM00320--WD40

Gene Ontology

GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0070180--F:large ribosomal subunit rRNA binding
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001158	Aegilops tauschii	36.19	4.00e-96	343.00
IUUC-Aml-001507	Ailuropoda melanoleuca	38.31	9.00e-121	425.00
IUUC-Atr-003141	Amborella trichopoda	40.78	6.00e-69	253.00
IUUC-Apl-003545	Anas platyrhynchos	37.56	1.00e-95	342.00
IUUC-Aly-005649	Arabidopsis lyrata	39.40	5.00e-116	410.00
IUUC-Ath-007625	Arabidopsis thaliana	39.24	6.00e-110	390.00
IUUC-Ago-007958	Ashbya gossypii	49.41	0.00e+00	631.00
IUUC-Acl-008344	Aspergillus clavatus	61.30	0.00e+00	735.00
IUUC-Afl-008616	Aspergillus flavus	59.49	0.00e+00	765.00
IUUC-Afu-009083	Aspergillus fumigatus	59.31	0.00e+00	721.00
IUUC-Ani-009365	Aspergillus nidulans	60.41	0.00e+00	748.00
IUUC-Ang-009796	Aspergillus niger	59.19	0.00e+00	743.00
IUUC-Aor-010015	Aspergillus oryzae	59.49	0.00e+00	765.00
IUUC-Ate-010537	Aspergillus terreus	58.99	0.00e+00	768.00
IUUC-Ame-011767	Astyanax mexicanus	45.03	3.00e-45	173.00
IUUC-Bgr-012286	Blumeria graminis	63.81	0.00e+00	842.00
IUUC-Bta-013569	Bos taurus	39.05	5.00e-117	413.00
IUUC-Bci-013820	Botrytis cinerea	64.42	0.00e+00	832.00
IUUC-Bdi-014477	Brachypodium distachyon	36.52	7.00e-112	396.00
IUUC-Bol-016099	Brassica oleracea	38.78	9.00e-115	405.00
IUUC-Bra-017174	Brassica rapa	38.94	1.00e-115	409.00
IUUC-Cel-018201	Caenorhabditis elegans	36.35	1.00e-98	352.00
IUUC-Cja-019009	Callithrix jacchus	38.81	5.00e-108	383.00
IUUC-Cfa-020173	Canis familiaris	35.74	8.00e-107	379.00
IUUC-Cpo-021796	Cavia porcellus	39.43	1.00e-116	412.00
IUUC-Cre-022650	Chlamydomonas reinhardtii	38.79	8.00e-104	369.00
IUUC-Csa-023440	Chlorocebus sabaeus	39.21	1.00e-123	435.00
IUUC-Cin-025782	Ciona intestinalis	38.34	9.00e-123	432.00
IUUC-Csv-026352	Ciona savignyi	38.51	8.00e-125	439.00
IUUC-Cne-027004	Cryptococcus neoformans	44.58	1.00e-152	532.00
IUUC-Cme-027242	Cyanidioschyzon merolae	33.98	3.00e-90	324.00
IUUC-Dre-028658	Danio rerio	40.28	2.00e-128	451.00
IUUC-Dno-028883	Dasypus novemcinctus	39.31	1.00e-122	432.00
IUUC-Dor-031031	Dipodomys ordii	38.09	2.00e-119	421.00
IUUC-Dse-031443	Dothistroma septosporum	56.52	0.00e+00	733.00
IUUC-Dme-031786	Drosophila melanogaster	38.80	1.00e-124	438.00
IUUC-Eca-033677	Equus caballus	40.10	2.00e-117	414.00
IUUC-Eeu-035310	Erinaceus europaeus	38.48	1.00e-95	341.00
IUUC-Fca-035888	Felis catus	37.30	7.00e-118	416.00
IUUC-Fal-037438	Ficedula albicollis	40.18	5.00e-99	353.00
IUUC-Fox-037973	Fusarium oxysporum	70.55	0.00e+00	997.00
IUUC-Fso-038187	Fusarium solani	75.90	0.00e+00	988.00
IUUC-Gmo-039114	Gadus morhua	37.66	1.00e-115	408.00
IUUC-Ggr-039746	Gaeumannomyces graminis	62.92	0.00e+00	878.00
IUUC-Gga-040631	Gallus gallus	35.92	2.00e-58	218.00
IUUC-Gac-042582	Gasterosteus aculeatus	39.19	1.00e-121	429.00
IUUC-Gma-044307	Glycine max	39.27	6.00e-117	413.00
IUUC-Ggo-045587	Gorilla gorilla	39.27	2.00e-124	437.00
IUUC-Hsa-046319	Homo sapiens	39.37	4.00e-124	437.00
IUUC-Hvu-047526	Hordeum vulgare	35.50	1.00e-104	372.00
IUUC-Itr-048683	Ictidomys tridecemlineatus	39.21	8.00e-118	416.00
IUUC-Kpa-049221	Komagataella pastoris	42.55	3.00e-159	553.00
IUUC-Lch-049640	Latimeria chalumnae	38.16	5.00e-128	449.00
IUUC-Lpe-051135	Leersia perrieri	36.66	2.00e-103	368.00
IUUC-Loc-051930	Lepisosteus oculatus	39.97	2.00e-128	450.00
IUUC-Lma-053290	Leptosphaeria maculans	61.15	0.00e+00	775.00
IUUC-Laf-053903	Loxodonta africana	36.38	2.00e-101	361.00
IUUC-Mcc-055471	Macaca mulatta	39.37	2.00e-124	437.00
IUUC-Meu-056190	Macropus eugenii	37.78	7.00e-117	412.00
IUUC-Mor-057135	Magnaporthe oryzae	63.18	0.00e+00	868.00
IUUC-Mpo-057475	Magnaporthe poae	68.36	0.00e+00	848.00
IUUC-Mtr-058689	Medicago truncatula	36.62	8.00e-105	372.00
IUUC-Mla-059149	Melampsora laricipopulina	43.18	7.00e-142	495.00
IUUC-Mga-059645	Meleagris gallopavo	31.40	1.00e-22	97.80
IUUC-Mvi-060485	Microbotryum violaceum	40.75	1.00e-123	436.00
IUUC-Mmr-061674	Microcebus murinus	39.12	2.00e-115	408.00
IUUC-Mdo-062973	Monodelphis domestica	38.52	7.00e-122	429.00
IUUC-Mmu-064180	Mus musculus	37.94	2.00e-120	424.00
IUUC-Mac-064535	Musa acuminata	39.72	3.00e-73	268.00
IUUC-Mpu-066406	Mustela putorius furo	39.30	8.00e-122	429.00
IUUC-Mlu-067795	Myotis lucifugus	39.05	2.00e-110	391.00
IUUC-Nfi-068516	Neosartorya fischeri	60.00	0.00e+00	691.00
IUUC-Ncr-068767	Neurospora crassa	69.46	0.00e+00	809.00
IUUC-Opr-071084	Ochotona princeps	40.07	3.00e-53	200.00
IUUC-Ont-071614	Oreochromis niloticus	40.00	9.00e-130	455.00
IUUC-Oba-075980	Oryza barthii	36.72	5.00e-105	373.00
IUUC-Obr-076799	Oryza brachyantha	36.08	4.00e-109	387.00
IUUC-Ogl-077134	Oryza glaberrima	36.45	4.00e-105	374.00
IUUC-Ogu-078655	Oryza glumaepatula	36.72	2.00e-103	368.00
IUUC-Oin-079654	Oryza indica	36.45	5.00e-105	373.00
IUUC-Olo-080706	Oryza longistaminata	36.89	1.00e-104	372.00
IUUC-Ome-081716	Oryza meridionalis	35.46	7.00e-91	326.00
IUUC-Oni-082508	Oryza nivara	34.78	5.00e-94	337.00
IUUC-Opu-083707	Oryza punctata	36.72	1.00e-103	368.00
IUUC-Oru-084453	Oryza rufipogon	36.89	1.00e-104	372.00
IUUC-Osa-085811	Oryza sativa	36.29	8.00e-105	372.00
IUUC-Ola-087361	Oryzias latipes	41.44	3.00e-133	467.00
IUUC-Oga-088015	Otolemur garnettii	38.35	3.00e-121	427.00
IUUC-Oar-090058	Ovis aries	35.80	2.00e-58	218.00
IUUC-Ptr-090631	Pan troglodytes	39.56	1.00e-56	211.00
IUUC-Pan-092306	Papio anubis	39.14	1.00e-123	435.00
IUUC-Pma-094622	Petromyzon marinus	38.49	1.00e-123	435.00
IUUC-Pno-094794	Phaeosphaeria nodorum	57.04	0.00e+00	725.00
IUUC-Ppa-095528	Physcomitrella patens	40.00	8.00e-74	269.00
IUUC-Pfo-096682	Poecilia formosa	39.81	4.00e-134	470.00
IUUC-Pab-097939	Pongo abelii	39.17	4.00e-109	386.00
IUUC-Pop-099043	Populus trichocarpa	38.53	9.00e-102	362.00
IUUC-Pca-100333	Procavia capensis	39.46	2.00e-118	418.00
IUUC-Ppe-102078	Prunus persica	37.70	8.00e-111	392.00
IUUC-Pgr-103525	Puccinia graminis	41.79	3.00e-129	454.00
IUUC-Ptt-103929	Puccinia triticina	41.77	2.00e-123	434.00
IUUC-Pte-104029	Pyrenophora teres	61.23	0.00e+00	807.00
IUUC-Pyt-104446	Pyrenophora triticirepentis	61.04	0.00e+00	809.00
IUUC-Rno-105248	Rattus norvegicus	40.32	2.00e-121	427.00
IUUC-Sce-106381	Saccharomyces cerevisiae	46.32	6.00e-175	605.00
IUUC-Sha-106519	Sarcophilus harrisii	38.05	1.00e-123	434.00
IUUC-Sja-107908	Schizosaccharomyces japonicus	44.69	2.00e-137	481.00
IUUC-Spo-108071	Schizosaccharomyces pombe	42.07	4.00e-136	476.00
IUUC-Smo-109604	Selaginella moellendorffii	38.26	3.00e-101	360.00
IUUC-Sit-110551	Setaria italica	37.14	3.00e-108	384.00
IUUC-Sly-110970	Solanum lycopersicum	42.00	3.00e-70	257.00
IUUC-Stu-112593	Solanum tuberosum	38.28	7.00e-110	389.00
IUUC-Sar-113123	Sorex araneus	43.92	3.00e-37	146.00
IUUC-Sbi-113945	Sorghum bicolor	37.22	4.00e-110	390.00
IUUC-Sre-115188	Sporisorium reilianum	40.97	2.00e-138	484.00
IUUC-Ssc-115352	Sus scrofa	38.83	2.00e-121	427.00
IUUC-Tru-117685	Takifugu rubripes	40.92	3.00e-134	470.00
IUUC-Tni-119982	Tetraodon nigroviridis	39.91	4.00e-127	446.00
IUUC-Tca-121664	Theobroma cacao	38.26	1.00e-113	402.00
IUUC-Tre-122229	Trichoderma reesei	68.93	0.00e+00	812.00
IUUC-Tvi-122576	Trichoderma virens	71.19	0.00e+00	830.00
IUUC-Tae-124110	Triticum aestivum	35.71	2.00e-99	354.00
IUUC-Tur-126781	Triticum urartu	35.85	5.00e-92	330.00
IUUC-Tme-127080	Tuber melanosporum	56.41	0.00e+00	723.00
IUUC-Ttr-128514	Tursiops truncatus	39.61	6.00e-79	286.00
IUUC-Uma-129556	Ustilago maydis	40.95	2.00e-136	478.00
IUUC-Vda-129715	Verticillium dahliae	72.35	0.00e+00	997.00
IUUC-Vvi-131211	Vitis vinifera	37.60	2.00e-107	381.00
IUUC-Xma-133883	Xiphophorus maculatus	39.97	1.00e-129	455.00
IUUC-Yli-134438	Yarrowia lipolytica	45.26	2.00e-162	564.00
IUUC-Zma-135341	Zea mays	39.36	1.00e-69	255.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence