iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bra-016781

Ensembl Protein ID

Bra000809.1-P

UniProt Accession

M4C9D0; M4C9D0_BRARP

Protein Name

Uncharacterized protein

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Bra000809	Bra000809.1	Bra000809.1-P

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.00e-27	96.0	533	564
UBD/Beta-Prp	1.60e-52	179.6	153	341

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDl 30
           gHtd++t+l+f  d + l+s+s Dg++++WD+
   Q: 533  GHTDRITDLCFsEDgKWLLSSSMDGSLRIWDV 564
           8**********955699**************6 PP

UBD/Beta-Prp

   S: 66   ilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrt 160
             + gs+ + +++w+++t k+++ +kg  +sv+++ +sp  d++++G +d  i+v +l+ +q++ +++   +g+v+ ++++ dg  ll+sG+  ++
   Q: 153  KVLVGSQEGPLQLWNINTKKMLYQFKGWGSSVCCCVSSPALDVVAIGCADGKIHVHNLKLDQEIVTFEHASRGAVTALSFSTDGrPLLASGGSFGV 248
           5789999**********************************************************9999***************9*********** PP
   S: 161  vrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlq....tgecvrtlnghtdnvksvrfspnderlvsgssDgsiriW 249
           + +W+l+  +l    + +h++sv sl+f  n + l+s+s d+++k+w +       + +r   gh+++++++rf +n+ +++s+++D+  r++
   Q: 249  ISIWNLNKRRLQSVIRDAHDSSVISLNFLANEPVLMSASADNSLKMWIFDtndgDPRLLRFRSGHSAPPLCIRFYSNGRHILSAGQDRAFRLF 341
           **********99999999*****************************9995555556699999************************988876 PP

Organism

Brassica rapa

Protein Sequence
(Fasta)

MGIFEPFRAI GYITSTVPFS VQRLGTETFV TVSVGKAFQI YNCAKLNLVI ISPQLPKKIR 60
ALASYRDFTF AAFGNEIAVF KRAHQVATWS KHVAKVDLLL LFGEHVLSLD VEGNMFIWAF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGGAATCT TCGAACCCTT TAGAGCTATA GGATACATAA CGAGCACGGT TCCTTTCTCC 60
GTTCAGCGAC TGGGCACCGA GACCTTCGTC ACTGTCAGCG TCGGCAAAGC TTTCCAGATT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR024977--Apc4_WD40_dom
IPR011044--Quino_amine_DH_bsu
IPR011047--Quinoprotein_ADH-like_supfam
IPR007319--SSU_processome_Utp21
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12894--ANAPC4_WD40
PF04192--Utp21
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0032040--C:small-subunit processome
GO:0006364--P:rRNA processing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001096	Aegilops tauschii	65.90	0.00e+00	1185.00
IUUC-Aml-002289	Ailuropoda melanoleuca	36.02	2.00e-148	520.00
IUUC-Atr-002859	Amborella trichopoda	65.97	0.00e+00	1131.00
IUUC-Apl-003505	Anas platyrhynchos	37.77	9.00e-141	494.00
IUUC-Aca-004339	Anolis carolinensis	35.07	4.00e-147	514.00
IUUC-Aly-005913	Arabidopsis lyrata	88.25	0.00e+00	1587.00
IUUC-Ath-006767	Arabidopsis thaliana	87.82	0.00e+00	1590.00
IUUC-Ago-007763	Ashbya gossypii	31.10	5.00e-113	402.00
IUUC-Acl-008275	Aspergillus clavatus	29.47	1.00e-73	270.00
IUUC-Afl-008457	Aspergillus flavus	30.15	1.00e-70	260.00
IUUC-Afu-008914	Aspergillus fumigatus	32.49	9.00e-42	165.00
IUUC-Ani-009225	Aspergillus nidulans	31.41	9.00e-86	311.00
IUUC-Aor-010046	Aspergillus oryzae	30.21	2.00e-100	360.00
IUUC-Ate-010337	Aspergillus terreus	29.39	2.00e-94	340.00
IUUC-Ame-010963	Astyanax mexicanus	35.78	4.00e-143	501.00
IUUC-Bgr-011973	Blumeria graminis	31.06	7.00e-64	238.00
IUUC-Bta-012462	Bos taurus	36.70	3.00e-150	525.00
IUUC-Bci-013940	Botrytis cinerea	27.01	1.00e-79	291.00
IUUC-Bdi-014725	Brachypodium distachyon	67.76	0.00e+00	1249.00
IUUC-Bol-016534	Brassica oleracea	95.61	0.00e+00	1681.00
IUUC-Cel-018581	Caenorhabditis elegans	27.48	5.00e-82	299.00
IUUC-Cja-019675	Callithrix jacchus	35.72	7.00e-156	544.00
IUUC-Cfa-020118	Canis familiaris	36.02	1.00e-147	516.00
IUUC-Cpo-021798	Cavia porcellus	35.61	6.00e-147	514.00
IUUC-Cre-022566	Chlamydomonas reinhardtii	32.36	2.00e-47	183.00
IUUC-Csa-023547	Chlorocebus sabaeus	36.08	7.00e-146	511.00
IUUC-Cho-024518	Choloepus hoffmanni	34.38	6.00e-51	195.00
IUUC-Cin-025339	Ciona intestinalis	33.16	7.00e-142	498.00
IUUC-Cgl-026476	Colletotrichum gloeosporioides	25.74	2.00e-66	247.00
IUUC-Cne-026859	Cryptococcus neoformans	32.50	7.00e-129	454.00
IUUC-Cme-027173	Cyanidioschyzon merolae	27.17	2.00e-78	286.00
IUUC-Dre-027733	Danio rerio	33.87	4.00e-143	501.00
IUUC-Dno-029439	Dasypus novemcinctus	36.60	3.00e-143	502.00
IUUC-Dor-030329	Dipodomys ordii	34.09	5.00e-63	236.00
IUUC-Dse-031511	Dothistroma septosporum	28.28	2.00e-88	320.00
IUUC-Dme-031694	Drosophila melanogaster	32.40	4.00e-126	445.00
IUUC-Ete-032930	Echinops telfairi	36.09	8.00e-125	441.00
IUUC-Eca-033302	Equus caballus	36.02	1.00e-145	510.00
IUUC-Eeu-034516	Erinaceus europaeus	36.22	1.00e-157	550.00
IUUC-Fca-036064	Felis catus	35.61	5.00e-144	504.00
IUUC-Fal-037024	Ficedula albicollis	35.68	1.00e-156	546.00
IUUC-Fox-037787	Fusarium oxysporum	29.55	5.00e-48	186.00
IUUC-Fso-038378	Fusarium solani	27.17	3.00e-51	197.00
IUUC-Gmo-039637	Gadus morhua	36.53	4.00e-78	285.00
IUUC-Ggr-040108	Gaeumannomyces graminis	30.25	1.00e-53	205.00
IUUC-Gga-040982	Gallus gallus	35.57	2.00e-162	566.00
IUUC-Gac-041565	Gasterosteus aculeatus	34.10	3.00e-131	462.00
IUUC-Gma-043185	Glycine max	71.57	0.00e+00	1333.00
IUUC-Ggo-045463	Gorilla gorilla	35.52	2.00e-146	513.00
IUUC-Hsa-045675	Homo sapiens	35.84	8.00e-149	521.00
IUUC-Hvu-047352	Hordeum vulgare	66.26	0.00e+00	1122.00
IUUC-Itr-048088	Ictidomys tridecemlineatus	35.04	7.00e-156	544.00
IUUC-Kpa-049164	Komagataella pastoris	30.39	3.00e-105	376.00
IUUC-Lch-050476	Latimeria chalumnae	36.57	1.00e-160	560.00
IUUC-Lpe-051556	Leersia perrieri	50.66	0.00e+00	839.00
IUUC-Loc-052820	Lepisosteus oculatus	35.03	2.00e-150	525.00
IUUC-Lma-052961	Leptosphaeria maculans	27.96	1.00e-84	308.00
IUUC-Laf-054006	Loxodonta africana	34.13	5.00e-137	481.00
IUUC-Mcc-055037	Macaca mulatta	35.71	9.00e-148	517.00
IUUC-Mor-057280	Magnaporthe oryzae	28.05	2.00e-91	330.00
IUUC-Mpo-057408	Magnaporthe poae	29.96	7.00e-53	202.00
IUUC-Mtr-058473	Medicago truncatula	70.92	0.00e+00	1299.00
IUUC-Mla-058892	Melampsora laricipopulina	31.31	2.00e-102	366.00
IUUC-Mga-059598	Meleagris gallopavo	31.94	2.00e-112	399.00
IUUC-Mvi-060334	Microbotryum violaceum	30.81	5.00e-98	352.00
IUUC-Mmr-061239	Microcebus murinus	35.69	2.00e-145	509.00
IUUC-Mdo-062471	Monodelphis domestica	35.47	4.00e-140	492.00
IUUC-Mmu-063872	Mus musculus	35.88	2.00e-153	536.00
IUUC-Mac-064631	Musa acuminata	68.40	0.00e+00	1122.00
IUUC-Mpu-066039	Mustela putorius furo	36.02	4.00e-159	555.00
IUUC-Mlu-067485	Myotis lucifugus	35.79	6.00e-145	508.00
IUUC-Nfi-068319	Neosartorya fischeri	29.02	2.00e-88	320.00
IUUC-Ncr-068725	Neurospora crassa	29.33	4.00e-48	186.00
IUUC-Nle-069050	Nomascus leucogenys	35.60	2.00e-148	519.00
IUUC-Opr-070437	Ochotona princeps	34.22	6.00e-43	168.00
IUUC-Ont-071574	Oreochromis niloticus	34.20	4.00e-140	491.00
IUUC-Oan-072826	Ornithorhynchus anatinus	36.57	1.00e-155	543.00
IUUC-Ocu-073995	Oryctolagus cuniculus	36.89	2.00e-141	496.00
IUUC-Oba-075407	Oryza barthii	59.98	0.00e+00	1051.00
IUUC-Obr-076451	Oryza brachyantha	68.31	0.00e+00	1281.00
IUUC-Ogl-077535	Oryza glaberrima	66.96	0.00e+00	1250.00
IUUC-Ogu-077995	Oryza glumaepatula	59.35	0.00e+00	1052.00
IUUC-Oin-079431	Oryza indica	67.43	0.00e+00	1259.00
IUUC-Olo-080495	Oryza longistaminata	58.57	0.00e+00	1024.00
IUUC-Oni-082336	Oryza nivara	64.58	0.00e+00	1175.00
IUUC-Opu-084028	Oryza punctata	61.77	0.00e+00	1057.00
IUUC-Oru-084500	Oryza rufipogon	59.29	0.00e+00	1045.00
IUUC-Osa-086242	Oryza sativa	67.54	0.00e+00	1257.00
IUUC-Ola-086612	Oryzias latipes	34.33	3.00e-109	389.00
IUUC-Olu-087703	Ostreococcus lucimarinus	34.18	4.00e-143	502.00
IUUC-Oga-088572	Otolemur garnettii	35.86	3.00e-148	519.00
IUUC-Oar-090363	Ovis aries	36.32	2.00e-151	529.00
IUUC-Ptr-090477	Pan troglodytes	35.64	1.00e-146	513.00
IUUC-Pan-092914	Papio anubis	35.71	1.00e-148	520.00
IUUC-Psi-093019	Pelodiscus sinensis	34.71	4.00e-145	508.00
IUUC-Pma-094303	Petromyzon marinus	33.07	5.00e-126	444.00
IUUC-Pno-094938	Phaeosphaeria nodorum	27.09	7.00e-78	285.00
IUUC-Ppa-095720	Physcomitrella patens	53.59	0.00e+00	956.00
IUUC-Pfo-097034	Poecilia formosa	33.88	7.00e-131	461.00
IUUC-Pab-097669	Pongo abelii	35.81	4.00e-148	518.00
IUUC-Pop-098835	Populus trichocarpa	73.68	0.00e+00	1372.00
IUUC-Pca-101097	Procavia capensis	37.43	2.00e-59	223.00
IUUC-Ppe-101430	Prunus persica	73.33	0.00e+00	1388.00
IUUC-Pva-103152	Pteropus vampyrus	36.09	8.00e-151	527.00
IUUC-Pgr-103517	Puccinia graminis	31.20	6.00e-121	428.00
IUUC-Ptt-103697	Puccinia triticina	30.63	2.00e-89	323.00
IUUC-Pte-104121	Pyrenophora teres	27.12	4.00e-83	302.00
IUUC-Pyt-104672	Pyrenophora triticirepentis	27.68	4.00e-84	306.00
IUUC-Rno-105435	Rattus norvegicus	35.75	7.00e-149	521.00
IUUC-Sce-106202	Saccharomyces cerevisiae	30.18	2.00e-96	346.00
IUUC-Sha-107272	Sarcophilus harrisii	36.60	6.00e-139	488.00
IUUC-Sja-107744	Schizosaccharomyces japonicus	35.01	9.00e-142	497.00
IUUC-Spo-108256	Schizosaccharomyces pombe	34.84	9.00e-147	514.00
IUUC-Ssl-108618	Sclerotinia sclerotiorum	26.40	1.00e-73	271.00
IUUC-Smo-108762	Selaginella moellendorffii	54.73	0.00e+00	984.00
IUUC-Sit-110051	Setaria italica	67.87	0.00e+00	1248.00
IUUC-Sly-111181	Solanum lycopersicum	71.24	0.00e+00	1302.00
IUUC-Stu-112018	Solanum tuberosum	71.46	0.00e+00	1303.00
IUUC-Sar-113348	Sorex araneus	34.63	5.00e-98	352.00
IUUC-Sbi-114282	Sorghum bicolor	67.76	0.00e+00	1260.00
IUUC-Sre-114946	Sporisorium reilianum	28.68	5.00e-74	272.00
IUUC-Ssc-115287	Sus scrofa	36.26	6.00e-150	524.00
IUUC-Tgu-117138	Taeniopygia guttata	34.45	2.00e-125	442.00
IUUC-Tru-118232	Takifugu rubripes	34.21	6.00e-134	471.00
IUUC-Tsy-119502	Tarsius syrichta	29.92	1.00e-100	360.00
IUUC-Tni-120378	Tetraodon nigroviridis	36.55	3.00e-133	469.00
IUUC-Tca-121506	Theobroma cacao	74.75	0.00e+00	1360.00
IUUC-Tre-122166	Trichoderma reesei	30.47	3.00e-64	239.00
IUUC-Tvi-122385	Trichoderma virens	30.59	2.00e-65	244.00
IUUC-Tae-122836	Triticum aestivum	66.81	0.00e+00	1265.00
IUUC-Tur-126490	Triticum urartu	57.06	0.00e+00	951.00
IUUC-Tme-127157	Tuber melanosporum	30.55	9.00e-112	397.00
IUUC-Tbe-127981	Tupaia belangeri	37.85	8.00e-125	441.00
IUUC-Ttr-128886	Tursiops truncatus	35.33	3.00e-144	505.00
IUUC-Uma-129439	Ustilago maydis	28.10	2.00e-82	300.00
IUUC-Vda-129760	Verticillium dahliae	25.65	2.00e-68	254.00
IUUC-Vpa-130456	Vicugna pacos	36.07	2.00e-148	519.00
IUUC-Vvi-131086	Vitis vinifera	73.49	0.00e+00	1370.00
IUUC-Xtr-131829	Xenopus tropicalis	36.07	5.00e-160	558.00
IUUC-Xma-133588	Xiphophorus maculatus	33.95	8.00e-129	454.00
IUUC-Yli-134328	Yarrowia lipolytica	30.59	2.00e-102	367.00
IUUC-Zma-135808	Zea mays	66.59	0.00e+00	1244.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence