iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sly-111570

Ensembl Protein ID

Solyc11g013440.1.1

UniProt Accession

K4D6E8; K4D6E8_SOLLC

Protein Name

Eukaryotic translation initiation factor 3 subunit F; eIF-3-epsilon

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Solyc11g013440.1	Solyc11g013440.1.1	Solyc11g013440.1.1

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
DUB/JAMM	37.34	1.00e-44	177.00	IUUC-Hsa-046860

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Solanum lycopersicum

Functional Description
(View)

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.

Protein Sequence
(Fasta)

MASSDHTILQ FSPSSTGISA KVHPLVIFNI CDCFVRRPDQ ADRIIGTLLG SVLPDGTVDI 60
RNSYAVPHSE SQDQVALDID YHHNMLSSHQ KVNPKEVIVG WFSTGFGVTG GSALIHEFFS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCTTCCA GTGATCATAC CATACTGCAA TTTTCACCAT CTTCAACCGG CATATCCGCA 60
AAGGTTCACC CTTTAGTCAT ATTCAACATA TGTGACTGCT TTGTCAGACG TCCCGATCAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0396--Initiation factor
KW-0648--Protein biosynthesis
KW-1185--Reference proteome

Interpro

IPR027531--eIF3f
IPR000555--JAMM/MPN+_dom
IPR024969--Rpn11/EIF3F_C

Pfam

PF01398--JAB
PF13012--MitMem_reg

SMART

SM00232--JAB_MPN

Gene Ontology

GO:0016282--C:eukaryotic 43S preinitiation complex
GO:0033290--C:eukaryotic 48S preinitiation complex
GO:0071541--C:eukaryotic translation initiation factor 3 complex, eIF3m
GO:0003743--F:translation initiation factor activity
GO:0031369--F:translation initiation factor binding
GO:0001731--P:formation of translation preinitiation complex
GO:0006446--P:regulation of translational initiation
GO:0006413--P:translational initiation

KEGG

sly:101255947

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001150	Aegilops tauschii	66.44	2.00e-101	361.00
IUUC-Aml-001527	Ailuropoda melanoleuca	37.74	7.00e-54	203.00
IUUC-Atr-002686	Amborella trichopoda	73.85	1.00e-114	404.00
IUUC-Apl-003977	Anas platyrhynchos	38.29	4.00e-45	173.00
IUUC-Aca-004335	Anolis carolinensis	37.83	3.00e-56	211.00
IUUC-Aly-005945	Arabidopsis lyrata	73.88	2.00e-118	417.00
IUUC-Ath-007045	Arabidopsis thaliana	72.85	3.00e-115	407.00
IUUC-Acl-008365	Aspergillus clavatus	33.92	5.00e-42	164.00
IUUC-Afl-008742	Aspergillus flavus	32.86	1.00e-40	159.00
IUUC-Afu-009030	Aspergillus fumigatus	33.57	1.00e-41	162.00
IUUC-Ani-009212	Aspergillus nidulans	32.86	3.00e-40	158.00
IUUC-Ang-009712	Aspergillus niger	33.57	1.00e-41	163.00
IUUC-Aor-009885	Aspergillus oryzae	32.86	2.00e-41	162.00
IUUC-Ate-010315	Aspergillus terreus	32.51	2.00e-39	155.00
IUUC-Ame-010801	Astyanax mexicanus	29.79	6.00e-27	113.00
IUUC-Bgr-011982	Blumeria graminis	32.99	6.00e-41	160.00
IUUC-Bta-012804	Bos taurus	37.36	2.00e-54	205.00
IUUC-Bci-013891	Botrytis cinerea	31.10	2.00e-33	135.00
IUUC-Bdi-014328	Brachypodium distachyon	70.40	4.00e-105	373.00
IUUC-Bol-015446	Brassica oleracea	74.23	1.00e-122	431.00
IUUC-Bra-016862	Brassica rapa	73.88	4.00e-122	429.00
IUUC-Cel-018171	Caenorhabditis elegans	28.28	1.00e-25	109.00
IUUC-Cja-019335	Callithrix jacchus	37.55	7.00e-54	203.00
IUUC-Cfa-020138	Canis familiaris	37.36	2.00e-53	202.00
IUUC-Cpo-022109	Cavia porcellus	35.16	2.00e-42	165.00
IUUC-Cre-022664	Chlamydomonas reinhardtii	40.71	7.00e-62	229.00
IUUC-Csa-023994	Chlorocebus sabaeus	37.83	7.00e-54	203.00
IUUC-Cho-024351	Choloepus hoffmanni	32.06	2.00e-31	129.00
IUUC-Cin-025801	Ciona intestinalis	39.18	2.00e-54	205.00
IUUC-Csv-025805	Ciona savignyi	39.55	3.00e-54	204.00
IUUC-Cgl-026643	Colletotrichum gloeosporioides	28.43	5.00e-31	127.00
IUUC-Cne-026868	Cryptococcus neoformans	33.09	3.00e-25	108.00
IUUC-Cme-027328	Cyanidioschyzon merolae	28.53	2.00e-20	92.40
IUUC-Dre-028085	Danio rerio	38.58	3.00e-56	211.00
IUUC-Dno-030099	Dasypus novemcinctus	37.74	1.00e-53	202.00
IUUC-Dor-030324	Dipodomys ordii	33.96	1.00e-43	169.00
IUUC-Dse-031314	Dothistroma septosporum	34.15	7.00e-43	166.00
IUUC-Dme-031926	Drosophila melanogaster	37.23	1.00e-49	189.00
IUUC-Ete-032569	Echinops telfairi	35.19	2.00e-49	188.00
IUUC-Eca-033502	Equus caballus	36.80	2.00e-48	185.00
IUUC-Eeu-034883	Erinaceus europaeus	31.87	2.00e-22	97.80
IUUC-Fca-035873	Felis catus	37.74	7.00e-54	203.00
IUUC-Fal-036921	Ficedula albicollis	39.03	2.00e-55	207.00
IUUC-Fox-037765	Fusarium oxysporum	27.67	2.00e-24	105.00
IUUC-Fso-038240	Fusarium solani	27.09	2.00e-25	108.00
IUUC-Gmo-038864	Gadus morhua	37.73	2.00e-58	218.00
IUUC-Ggr-039862	Gaeumannomyces graminis	30.85	4.00e-29	121.00
IUUC-Gga-040952	Gallus gallus	39.03	3.00e-55	207.00
IUUC-Gac-041677	Gasterosteus aculeatus	40.44	4.00e-61	227.00
IUUC-Gma-043061	Glycine max	79.93	7.00e-117	412.00
IUUC-Ggo-045591	Gorilla gorilla	37.83	6.00e-54	203.00
IUUC-Hsa-046860	Homo sapiens	37.83	6.00e-54	203.00
IUUC-Hvu-047410	Hordeum vulgare	70.27	4.00e-57	212.00
IUUC-Itr-048211	Ictidomys tridecemlineatus	38.11	2.00e-54	205.00
IUUC-Lch-049410	Latimeria chalumnae	36.71	1.00e-36	145.00
IUUC-Lpe-051102	Leersia perrieri	75.19	1.00e-106	378.00
IUUC-Loc-052016	Lepisosteus oculatus	35.56	3.00e-45	174.00
IUUC-Lma-053157	Leptosphaeria maculans	31.45	2.00e-39	155.00
IUUC-Laf-054568	Loxodonta africana	37.83	1.00e-53	202.00
IUUC-Mcc-054613	Macaca mulatta	37.55	7.00e-54	203.00
IUUC-Mor-057104	Magnaporthe oryzae	29.14	6.00e-29	120.00
IUUC-Mtr-058445	Medicago truncatula	77.78	2.00e-128	450.00
IUUC-Mla-059038	Melampsora laricipopulina	28.82	2.00e-28	119.00
IUUC-Mga-059548	Meleagris gallopavo	37.99	3.00e-46	177.00
IUUC-Mvi-060520	Microbotryum violaceum	27.73	3.00e-16	78.60
IUUC-Mdo-062376	Monodelphis domestica	37.26	6.00e-54	203.00
IUUC-Mmu-063254	Mus musculus	37.74	5.00e-54	203.00
IUUC-Mac-065635	Musa acuminata	67.58	6.00e-107	379.00
IUUC-Mpu-066314	Mustela putorius furo	37.74	5.00e-54	203.00
IUUC-Mlu-067512	Myotis lucifugus	38.40	7.00e-55	206.00
IUUC-Nfi-068262	Neosartorya fischeri	33.57	1.00e-41	162.00
IUUC-Ncr-068872	Neurospora crassa	27.59	3.00e-30	125.00
IUUC-Nle-070118	Nomascus leucogenys	37.74	8.00e-54	203.00
IUUC-Opr-071228	Ochotona princeps	37.12	7.00e-46	176.00
IUUC-Ont-072600	Oreochromis niloticus	37.45	4.00e-58	216.00
IUUC-Oan-073584	Ornithorhynchus anatinus	36.68	2.00e-46	177.00
IUUC-Ocu-074542	Oryctolagus cuniculus	37.74	4.00e-54	204.00
IUUC-Oba-075923	Oryza barthii	72.28	2.00e-111	394.00
IUUC-Obr-076313	Oryza brachyantha	72.28	3.00e-106	377.00
IUUC-Ogl-076932	Oryza glaberrima	72.28	2.00e-111	394.00
IUUC-Ogu-078152	Oryza glumaepatula	72.28	2.00e-111	394.00
IUUC-Oin-079528	Oryza indica	72.28	2.00e-111	394.00
IUUC-Olo-080401	Oryza longistaminata	72.28	2.00e-111	394.00
IUUC-Ome-081553	Oryza meridionalis	72.28	2.00e-111	394.00
IUUC-Oni-082090	Oryza nivara	72.28	1.00e-111	395.00
IUUC-Opu-083583	Oryza punctata	72.63	1.00e-106	378.00
IUUC-Oru-084492	Oryza rufipogon	72.28	2.00e-111	394.00
IUUC-Osa-085383	Oryza sativa	72.28	2.00e-111	394.00
IUUC-Ola-086835	Oryzias latipes	37.36	4.00e-58	217.00
IUUC-Olu-087716	Ostreococcus lucimarinus	36.30	8.00e-41	159.00
IUUC-Oga-088886	Otolemur garnettii	38.11	1.00e-54	206.00
IUUC-Oar-090079	Ovis aries	37.64	2.00e-54	204.00
IUUC-Ptr-091457	Pan troglodytes	37.83	7.00e-54	203.00
IUUC-Pan-092317	Papio anubis	34.78	2.00e-29	121.00
IUUC-Psi-093129	Pelodiscus sinensis	36.84	9.00e-48	182.00
IUUC-Pma-094488	Petromyzon marinus	38.95	6.00e-57	213.00
IUUC-Pno-095049	Phaeosphaeria nodorum	31.80	3.00e-41	161.00
IUUC-Ppa-095341	Physcomitrella patens	60.36	2.00e-100	357.00
IUUC-Pfo-096286	Poecilia formosa	37.45	9.00e-59	219.00
IUUC-Pab-097765	Pongo abelii	37.83	7.00e-54	203.00
IUUC-Pop-099131	Populus trichocarpa	79.65	3.00e-124	437.00
IUUC-Pca-100524	Procavia capensis	31.86	1.00e-30	125.00
IUUC-Ppe-101934	Prunus persica	79.02	1.00e-130	457.00
IUUC-Pva-102577	Pteropus vampyrus	38.40	2.00e-54	205.00
IUUC-Pgr-103521	Puccinia graminis	31.60	5.00e-31	127.00
IUUC-Pte-104304	Pyrenophora teres	32.51	5.00e-42	164.00
IUUC-Pyt-104563	Pyrenophora triticirepentis	32.51	1.00e-41	162.00
IUUC-Rno-105717	Rattus norvegicus	38.40	1.00e-54	206.00
IUUC-Sha-107190	Sarcophilus harrisii	37.07	2.00e-51	195.00
IUUC-Sja-107918	Schizosaccharomyces japonicus	31.07	5.00e-35	140.00
IUUC-Spo-108355	Schizosaccharomyces pombe	33.22	6.00e-37	147.00
IUUC-Smo-109374	Selaginella moellendorffii	63.33	4.00e-104	370.00
IUUC-Sit-110119	Setaria italica	74.72	6.00e-109	385.00
IUUC-Stu-112308	Solanum tuberosum	88.77	3.00e-142	496.00
IUUC-Sar-113515	Sorex araneus	36.84	2.00e-16	77.80
IUUC-Sbi-114605	Sorghum bicolor	75.09	5.00e-109	387.00
IUUC-Sre-114906	Sporisorium reilianum	34.06	3.00e-39	154.00
IUUC-Tgu-117087	Taeniopygia guttata	38.43	4.00e-46	177.00
IUUC-Tru-117700	Takifugu rubripes	39.26	9.00e-60	222.00
IUUC-Tni-120470	Tetraodon nigroviridis	38.89	3.00e-58	217.00
IUUC-Tca-121109	Theobroma cacao	80.42	4.00e-123	432.00
IUUC-Tre-122095	Trichoderma reesei	27.30	2.00e-26	112.00
IUUC-Tvi-122580	Trichoderma virens	26.96	9.00e-26	110.00
IUUC-Tae-125129	Triticum aestivum	73.31	4.00e-108	383.00
IUUC-Tur-126658	Triticum urartu	63.60	4.00e-97	346.00
IUUC-Tme-127043	Tuber melanosporum	34.63	2.00e-40	158.00
IUUC-Tbe-127927	Tupaia belangeri	37.74	7.00e-54	203.00
IUUC-Ttr-129231	Tursiops truncatus	37.74	3.00e-54	204.00
IUUC-Uma-129578	Ustilago maydis	34.18	1.00e-37	149.00
IUUC-Vda-129730	Verticillium dahliae	29.29	6.00e-31	127.00
IUUC-Vvi-130968	Vitis vinifera	81.34	2.00e-130	457.00
IUUC-Xtr-132203	Xenopus tropicalis	37.45	9.00e-53	199.00
IUUC-Xma-133972	Xiphophorus maculatus	37.45	8.00e-59	219.00
IUUC-Yli-134553	Yarrowia lipolytica	30.14	1.00e-29	122.00
IUUC-Zma-134941	Zea mays	74.34	4.00e-100	356.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence