iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bra-016988

Ensembl Protein ID

Bra023524.1-P

UniProt Accession

M4E421; M4E421_BRARP

Protein Name

Ribosome biogenesis protein WDR12 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Bra023524	Bra023524.1	Bra023524.1-P

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.10e-29	102.2	352	386

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tllvsGsdDgtikvWDlrtg 33
           H+++++++++  s+  +l+s+s+Dg+i++WDlrt 
   Q: 352  HSSWISACKWheSSwFHLLSASYDGKIMLWDLRTA 386
           ***********977688***************986 PP

Organism

Brassica rapa

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MDGEGEDASK VIHVKFVTKL YPPFKAPVSS VVIPSNVTRL GLSSIVNSLL TLEKPEAFDF 60
LIDGELIRMS LEQFLLAKGI SAERTLEIEY IRAVAPRKEE KPSLHDDWVS AVDGSSPRFI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGATGGAG AAGGAGAAGA TGCATCGAAA GTAATTCACG TGAAGTTCGT GACGAAGCTT 60
TACCCTCCGT TCAAAGCTCC GGTTAGCTCC GTCGTCATCC CTTCAAATGT CACTCGTCTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	64.90	6.00e-170	589.00
IUUC-Atr-002544	Amborella trichopoda	60.37	1.00e-153	535.00
IUUC-Apl-003981	Anas platyrhynchos	35.79	7.00e-56	210.00
IUUC-Aly-006455	Arabidopsis lyrata	83.37	0.00e+00	733.00
IUUC-Ath-006669	Arabidopsis thaliana	84.99	0.00e+00	728.00
IUUC-Acl-008177	Aspergillus clavatus	31.28	1.00e-44	173.00
IUUC-Afl-008617	Aspergillus flavus	29.82	4.00e-40	159.00
IUUC-Afu-008752	Aspergillus fumigatus	30.15	1.00e-41	163.00
IUUC-Ani-009136	Aspergillus nidulans	31.87	2.00e-44	173.00
IUUC-Ang-009701	Aspergillus niger	29.64	9.00e-40	157.00
IUUC-Aor-009884	Aspergillus oryzae	29.82	1.00e-40	160.00
IUUC-Ate-010472	Aspergillus terreus	25.90	6.00e-15	74.70
IUUC-Bci-013953	Botrytis cinerea	27.86	3.00e-40	159.00
IUUC-Bdi-014351	Brachypodium distachyon	62.76	1.00e-156	545.00
IUUC-Bol-016514	Brassica oleracea	99.53	0.00e+00	837.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	38.72	3.00e-66	244.00
IUUC-Cne-027063	Cryptococcus neoformans	28.28	5.00e-28	118.00
IUUC-Dno-029225	Dasypus novemcinctus	33.57	2.00e-53	202.00
IUUC-Fal-036891	Ficedula albicollis	35.54	2.00e-51	196.00
IUUC-Fox-037965	Fusarium oxysporum	26.15	3.00e-32	132.00
IUUC-Gma-043756	Glycine max	68.38	2.00e-180	625.00
IUUC-Hvu-047331	Hordeum vulgare	65.66	5.00e-149	520.00
IUUC-Kpa-049304	Komagataella pastoris	29.32	3.00e-44	172.00
IUUC-Lpe-051675	Leersia perrieri	62.90	6.00e-164	570.00
IUUC-Lma-053258	Leptosphaeria maculans	30.13	2.00e-40	161.00
IUUC-Meu-056501	Macropus eugenii	35.15	2.00e-47	182.00
IUUC-Mpo-057463	Magnaporthe poae	32.24	8.00e-18	83.20
IUUC-Mtr-058367	Medicago truncatula	66.05	9.00e-169	586.00
IUUC-Mdo-062257	Monodelphis domestica	34.69	2.00e-58	219.00
IUUC-Mac-065540	Musa acuminata	63.06	5.00e-160	556.00
IUUC-Nfi-068260	Neosartorya fischeri	30.41	2.00e-43	170.00
IUUC-Oba-075712	Oryza barthii	53.49	1.00e-125	442.00
IUUC-Obr-076721	Oryza brachyantha	61.64	1.00e-161	561.00
IUUC-Ogl-077229	Oryza glaberrima	62.93	1.00e-162	565.00
IUUC-Ogu-078977	Oryza glumaepatula	53.26	2.00e-125	441.00
IUUC-Oin-079683	Oryza indica	62.44	9.00e-162	562.00
IUUC-Olo-080291	Oryza longistaminata	53.14	9.00e-86	309.00
IUUC-Ome-081834	Oryza meridionalis	63.47	9.00e-162	563.00
IUUC-Oni-082507	Oryza nivara	60.18	1.00e-151	528.00
IUUC-Opu-083396	Oryza punctata	62.21	2.00e-162	565.00
IUUC-Oru-085220	Oryza rufipogon	60.18	8.00e-152	529.00
IUUC-Osa-085767	Oryza sativa	62.44	9.00e-162	562.00
IUUC-Pan-092833	Papio anubis	34.05	3.00e-52	199.00
IUUC-Pma-094189	Petromyzon marinus	34.21	1.00e-57	216.00
IUUC-Ppa-095429	Physcomitrella patens	52.55	8.00e-127	446.00
IUUC-Pab-097571	Pongo abelii	34.05	2.00e-52	199.00
IUUC-Pop-099977	Populus trichocarpa	70.37	0.00e+00	635.00
IUUC-Ppe-101848	Prunus persica	68.91	0.00e+00	635.00
IUUC-Ptt-103781	Puccinia triticina	25.00	1.00e-33	137.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	29.66	9.00e-43	167.00
IUUC-Sha-107122	Sarcophilus harrisii	34.84	4.00e-55	208.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	26.42	1.00e-37	150.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	28.87	2.00e-43	169.00
IUUC-Sit-110354	Setaria italica	63.81	1.00e-165	575.00
IUUC-Sly-111023	Solanum lycopersicum	64.16	4.00e-167	580.00
IUUC-Stu-112778	Solanum tuberosum	70.05	4.00e-174	603.00
IUUC-Sbi-114193	Sorghum bicolor	62.61	2.00e-156	545.00
IUUC-Ssc-116066	Sus scrofa	33.57	6.00e-54	204.00
IUUC-Tgu-117048	Taeniopygia guttata	35.97	5.00e-55	207.00
IUUC-Tsy-119573	Tarsius syrichta	22.39	4.00e-16	78.60
IUUC-Tca-121605	Theobroma cacao	72.06	0.00e+00	640.00
IUUC-Tre-121947	Trichoderma reesei	27.63	7.00e-36	144.00
IUUC-Tvi-122481	Trichoderma virens	27.85	2.00e-35	143.00
IUUC-Tae-123847	Triticum aestivum	64.90	6.00e-170	589.00
IUUC-Tur-126586	Triticum urartu	66.25	2.00e-157	548.00
IUUC-Tme-126900	Tuber melanosporum	30.50	1.00e-50	193.00
IUUC-Vvi-131009	Vitis vinifera	71.49	0.00e+00	641.00
IUUC-Yli-134531	Yarrowia lipolytica	27.90	5.00e-36	145.00
IUUC-Zma-135509	Zea mays	63.11	1.00e-163	569.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence