iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bol-015726

Ensembl Protein ID

Bo8g106810.1

UniProt Accession

A0A0D3DXD1; A0A0D3DXD1_BRAOL

Protein Name

Pectate lyase

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Bo8g106810	Bo8g106810.1	Bo8g106810.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E2/UBC	7.60e-52	176.3	517	651

Active Site

Position(s)	Description	Evidence
597	Glycyl thioester intermediate	{ECO:0000256\|PROSITE-ProRule:PRU00388}

Domain Profile

E2/UBC

   S: 1    RlkkelkelekdppegisakpvdesdltewevlilGpedtpYeggvFkleiefpedYPfkPPkvkfltkifhPnvyenGkvClsilkeeekWspals 97
           Rl++++k+l++dpp+gis  p+d+ +++ w+++i+Gp+dtp++gg+Fkl+++f+edYP kPP+v+f++++fhPn+y++G++Cl+il+  ++Wsp ++
   Q: 517  RLMRDFKRLQQDPPAGISGAPQDN-NIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYD 610
           9**********************9.9************************************************************9..******** PP
   S: 98   vesvllsiqsllaepnpesplneeaaellkknreeykkkvr 138
           v+ +l+siqsll++pnp+sp+n+eaa++++++++ey+++vr
   Q: 611  VAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVR 651
           ***************************************98 PP

Organism

Brassica oleracea

Protein Sequence
(Fasta)

MAATFLNIGG YTLVFLSVIL VPHVQANVAI FDNYWTQRQG DALKQTIASY DPNPLNVTDH 60
LNYHVALAVD ATESTNNTRR ELIGLETQEG SGKCIAYNPI DKCWRCDPNW EENRKKLVEC 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCAGCAA CGTTTTTGAA TATTGGCGGC TACACTCTAG TCTTCTTATC AGTCATATTG 60
GTCCCACATG TTCAAGCCAA TGTTGCTATC TTCGACAACT ACTGGACGCA GCGTCAAGGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0106--Calcium
KW-0181--Complete proteome
KW-0456--Lyase
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0732--Signal
KW-0833--Ubl conjugation pathway

Interpro

IPR002022--Amb_allergen_dom
IPR018082--AmbAllergen
IPR007524--Pec_lyase_N
IPR012334--Pectin_lyas_fold
IPR011050--Pectin_lyase_fold/virulence
IPR000608--UBQ-conjugat_E2
IPR023313--UBQ-conjugating_AS
IPR016135--UBQ-conjugating_enzyme/RWD

PROSITE

PS00183--UBIQUITIN_CONJUGAT_1
PS50127--UBIQUITIN_CONJUGAT_2

Pfam

PF00544--Pec_lyase_C
PF04431--Pec_lyase_N
PF00179--UQ_con

PRINTS

PR00807--AMBALLERGEN

SMART

SM00656--Amb_all

Gene Ontology

GO:0046872--F:metal ion binding
GO:0030570--F:pectate lyase activity
GO:0045490--P:pectin catabolic process

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001001	Aegilops tauschii	92.11	5.00e-85	305.00
IUUC-Aml-002120	Ailuropoda melanoleuca	76.51	3.00e-70	256.00
IUUC-Atr-002623	Amborella trichopoda	96.05	4.00e-87	312.00
IUUC-Apl-004063	Anas platyrhynchos	70.55	2.00e-59	220.00
IUUC-Aca-005001	Anolis carolinensis	76.51	3.00e-70	256.00
IUUC-Aly-005584	Arabidopsis lyrata	100.00	1.00e-89	321.00
IUUC-Ath-007149	Arabidopsis thaliana	100.00	1.00e-89	321.00
IUUC-Bgr-012039	Blumeria graminis	64.93	2.00e-54	203.00
IUUC-Bta-012840	Bos taurus	76.51	3.00e-70	256.00
IUUC-Bdi-015010	Brachypodium distachyon	94.08	4.00e-86	309.00
IUUC-Bra-016809	Brassica rapa	80.40	3.00e-90	323.00
IUUC-Cre-022822	Chlamydomonas reinhardtii	77.63	3.00e-62	229.00
IUUC-Cgl-026381	Colletotrichum gloeosporioides	66.44	9.00e-62	228.00
IUUC-Cme-027284	Cyanidioschyzon merolae	67.95	7.00e-58	216.00
IUUC-Dno-029661	Dasypus novemcinctus	76.51	3.00e-70	256.00
IUUC-Dor-030452	Dipodomys ordii	74.63	3.00e-61	226.00
IUUC-Ete-032595	Echinops telfairi	75.84	9.00e-70	254.00
IUUC-Eca-033377	Equus caballus	76.51	3.00e-70	256.00
IUUC-Fox-037808	Fusarium oxysporum	66.44	1.00e-61	228.00
IUUC-Gma-043883	Glycine max	96.05	1.00e-87	314.00
IUUC-Hvu-047054	Hordeum vulgare	92.11	5.00e-85	305.00
IUUC-Kpa-049225	Komagataella pastoris	65.33	7.00e-60	222.00
IUUC-Lpe-051696	Leersia perrieri	52.46	4.00e-117	415.00
IUUC-Loc-051962	Lepisosteus oculatus	77.85	9.00e-72	261.00
IUUC-Mpo-057498	Magnaporthe poae	63.69	5.00e-62	230.00
IUUC-Mtr-058305	Medicago truncatula	96.05	5.00e-88	315.00
IUUC-Mga-059863	Meleagris gallopavo	74.81	5.00e-62	229.00
IUUC-Mmr-060630	Microcebus murinus	76.51	3.00e-70	256.00
IUUC-Mac-065428	Musa acuminata	82.68	1.00e-87	315.00
IUUC-Mpu-065803	Mustela putorius furo	76.51	3.00e-70	256.00
IUUC-Mlu-067147	Myotis lucifugus	76.51	3.00e-70	256.00
IUUC-Opr-070935	Ochotona princeps	76.51	3.00e-70	256.00
IUUC-Ont-071716	Oreochromis niloticus	78.52	4.00e-71	259.00
IUUC-Oan-072706	Ornithorhynchus anatinus	70.55	4.00e-63	232.00
IUUC-Oba-075847	Oryza barthii	86.05	2.00e-86	311.00
IUUC-Ola-087448	Oryzias latipes	78.00	3.00e-71	259.00
IUUC-Oar-090141	Ovis aries	76.51	3.00e-70	256.00
IUUC-Ppa-095689	Physcomitrella patens	93.42	2.00e-73	267.00
IUUC-Pop-099712	Populus trichocarpa	96.71	1.00e-79	287.00
IUUC-Ppe-101949	Prunus persica	94.30	5.00e-89	320.00
IUUC-Rno-105772	Rattus norvegicus	76.00	1.00e-70	258.00
IUUC-Sce-106283	Saccharomyces cerevisiae	63.76	2.00e-59	221.00
IUUC-Sha-107650	Sarcophilus harrisii	75.84	6.00e-69	252.00
IUUC-Smo-109036	Selaginella moellendorffii	94.08	3.00e-86	310.00
IUUC-Sly-111506	Solanum lycopersicum	96.71	6.00e-88	315.00
IUUC-Stu-112518	Solanum tuberosum	93.04	4.00e-88	316.00
IUUC-Sar-113429	Sorex araneus	76.51	3.00e-70	256.00
IUUC-Tru-118576	Takifugu rubripes	78.52	4.00e-71	259.00
IUUC-Tsy-119000	Tarsius syrichta	76.51	3.00e-70	256.00
IUUC-Tni-119745	Tetraodon nigroviridis	78.52	4.00e-71	259.00
IUUC-Tca-121827	Theobroma cacao	95.39	2.00e-87	313.00
IUUC-Tre-122002	Trichoderma reesei	66.44	2.00e-61	227.00
IUUC-Tvi-122331	Trichoderma virens	66.44	2.00e-61	227.00
IUUC-Tme-127148	Tuber melanosporum	67.79	6.00e-62	229.00
IUUC-Tbe-127921	Tupaia belangeri	74.50	5.00e-66	242.00
IUUC-Ttr-129121	Tursiops truncatus	76.51	3.00e-70	256.00
IUUC-Vda-129711	Verticillium dahliae	66.44	9.00e-62	228.00
IUUC-Vpa-130570	Vicugna pacos	71.64	6.00e-57	212.00
IUUC-Vvi-131547	Vitis vinifera	90.36	3.00e-88	317.00
IUUC-Xtr-131824	Xenopus tropicalis	77.18	5.00e-71	259.00
IUUC-Yli-134660	Yarrowia lipolytica	65.33	5.00e-61	226.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence