iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-006767

Ensembl Protein ID

AT4G04940.1

UniProt Accession

Q93YS7; Q93YS7_ARATH

Genbank Protein ID

AAL24132.1; AAM20284.1; AEE82445.1

Protein Name

Putative WD-repeat membrane protein; Transducin family protein / WD-40 repeat family protein

Genbank Nucleotide ID

AY059784; AY096634; CP002687

Gene Name

At4g04940; T1J1.5; T1J1_5

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT4G04940	AT4G04940.1	AT4G04940.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	7.00e-26	90.1	555	586
UBD/Beta-Prp	5.60e-55	187.5	153	374

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDl 30
           gHtd++t+l+f  d + ++s+s Dg++++WD+
   Q: 555  GHTDRITDLCFsEDgKWVISSSMDGSLRIWDV 586
           8**********955699**************6 PP

UBD/Beta-Prp

   S: 66   ilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvr 162
             + gs+ + +++w+++t k+++ +kg  +sv+s+ +sp  d++++G +d  i+v +++ ++++ +++   +g+v+ ++++ dg  ll+sG+  +++ 
   Q: 153  KVLVGSQEGPLQLWNINTKKMLYQFKGWGSSVTSCVSSPALDVVAIGCADGKIHVHNIKLDEEIVTFEHASRGAVTALSFSTDGrPLLASGGSFGVIS 250
           57899************************************************************999****************************** PP
   S: 163  lWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlq....tgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdl 256
           +W+l+ ++l    + +h++s+ sl+f  n + l+s+s d+++k+w +       + +r   gh+++++++rf +n+ +++s+++D+  r++ + + + 
   Q: 251  IWNLNKKRLQSVIRDAHDSSIISLNFLANEPVLMSASADNSLKMWIFDtndgDPRLLRFRSGHSAPPLCIRFYSNGRHILSAGQDRAFRLFSVIQEQQ 348
           *********************************************9996655556699999******************************9988888 PP
   S: 257  lktlqlhn.................s 265
            + l++++                 +
   Q: 349  SRELSQRHisrrakklrlkeeelklK 374
           88888888555555555555444443 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MGIFEPFRAI GYITSTVPFS VQRLGTETFV TVSVGKAFQI YNCAKLNLVI ISPQLPKKIR 60
ALASYRDYTF VAFGNEIAVF RRAHQVATWS KHVAKVDLLL VFGEHVLSLD VEGNMFIWAF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GAAATTTCGT TAAACCCTAA ACCCCAAAGG TCTTGTTTGC TGTATCTCCT CCATCGCTCC 60
TGCGCCGCGT TTTCTCTCTC AAGCTCTTAA AAAACCTTTC TTTGATTTGA TAATCCTAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR024977--Apc4_WD40_dom
IPR007319--SSU_processome_Utp21
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12894--ANAPC4_WD40
PF04192--Utp21
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0034388--C:Pwp2p-containing subcomplex of 90S preribosome
GO:0032040--C:small-subunit processome
GO:0006364--P:rRNA processing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001096	Aegilops tauschii	67.74	0.00e+00	1216.00
IUUC-Aml-002289	Ailuropoda melanoleuca	37.74	1.00e-158	553.00
IUUC-Atr-002859	Amborella trichopoda	66.90	0.00e+00	1137.00
IUUC-Apl-003505	Anas platyrhynchos	37.71	3.00e-148	518.00
IUUC-Aca-004339	Anolis carolinensis	35.67	2.00e-151	529.00
IUUC-Aly-005913	Arabidopsis lyrata	97.04	0.00e+00	1734.00
IUUC-Ago-007763	Ashbya gossypii	30.57	6.00e-117	414.00
IUUC-Acl-008275	Aspergillus clavatus	31.17	2.00e-83	303.00
IUUC-Afl-008457	Aspergillus flavus	32.10	5.00e-81	295.00
IUUC-Afu-008914	Aspergillus fumigatus	30.05	1.00e-89	324.00
IUUC-Ani-009225	Aspergillus nidulans	32.64	1.00e-98	353.00
IUUC-Aor-010046	Aspergillus oryzae	32.02	1.00e-112	400.00
IUUC-Ate-010337	Aspergillus terreus	30.84	1.00e-103	370.00
IUUC-Ame-010963	Astyanax mexicanus	37.28	4.00e-153	535.00
IUUC-Bgr-011973	Blumeria graminis	29.78	8.00e-111	394.00
IUUC-Bta-012462	Bos taurus	38.04	4.00e-162	565.00
IUUC-Bci-013940	Botrytis cinerea	30.75	8.00e-122	431.00
IUUC-Bdi-014725	Brachypodium distachyon	69.40	0.00e+00	1254.00
IUUC-Bol-016534	Brassica oleracea	90.89	0.00e+00	1600.00
IUUC-Bra-016781	Brassica rapa	88.25	0.00e+00	1571.00
IUUC-Cel-018581	Caenorhabditis elegans	26.80	1.00e-82	300.00
IUUC-Cja-019675	Callithrix jacchus	37.38	5.00e-166	577.00
IUUC-Cfa-020118	Canis familiaris	37.72	7.00e-159	553.00
IUUC-Cpo-021798	Cavia porcellus	36.78	7.00e-155	540.00
IUUC-Cre-022566	Chlamydomonas reinhardtii	31.90	4.00e-45	175.00
IUUC-Csa-023547	Chlorocebus sabaeus	37.51	8.00e-156	543.00
IUUC-Cho-024518	Choloepus hoffmanni	32.69	9.00e-105	374.00
IUUC-Cin-025339	Ciona intestinalis	33.23	3.00e-146	512.00
IUUC-Cgl-026476	Colletotrichum gloeosporioides	29.76	2.00e-106	379.00
IUUC-Cne-026859	Cryptococcus neoformans	34.03	6.00e-140	491.00
IUUC-Cme-027173	Cyanidioschyzon merolae	27.62	5.00e-85	308.00
IUUC-Dre-027733	Danio rerio	36.07	2.00e-150	526.00
IUUC-Dno-029439	Dasypus novemcinctus	37.80	6.00e-153	534.00
IUUC-Dor-030329	Dipodomys ordii	35.48	2.00e-66	247.00
IUUC-Dse-031511	Dothistroma septosporum	29.35	7.00e-97	348.00
IUUC-Dme-031694	Drosophila melanogaster	32.15	3.00e-131	462.00
IUUC-Ete-032930	Echinops telfairi	37.40	1.00e-130	460.00
IUUC-Eca-033302	Equus caballus	37.57	3.00e-156	545.00
IUUC-Eeu-034516	Erinaceus europaeus	37.74	7.00e-166	577.00
IUUC-Fca-036064	Felis catus	37.20	1.00e-154	540.00
IUUC-Fal-037024	Ficedula albicollis	37.17	1.00e-161	563.00
IUUC-Fox-037787	Fusarium oxysporum	30.32	6.00e-96	345.00
IUUC-Fso-038378	Fusarium solani	29.71	2.00e-99	356.00
IUUC-Gmo-039637	Gadus morhua	36.36	5.00e-80	291.00
IUUC-Ggr-040108	Gaeumannomyces graminis	29.62	2.00e-101	363.00
IUUC-Gga-040982	Gallus gallus	36.84	1.00e-169	590.00
IUUC-Gac-041565	Gasterosteus aculeatus	35.91	1.00e-139	489.00
IUUC-Gma-043185	Glycine max	72.84	0.00e+00	1352.00
IUUC-Ggo-045463	Gorilla gorilla	36.90	1.00e-156	546.00
IUUC-Hsa-045675	Homo sapiens	37.20	5.00e-159	554.00
IUUC-Hvu-047352	Hordeum vulgare	67.85	0.00e+00	1132.00
IUUC-Itr-048088	Ictidomys tridecemlineatus	36.40	2.00e-164	572.00
IUUC-Kpa-049164	Komagataella pastoris	32.56	1.00e-115	410.00
IUUC-Lch-050476	Latimeria chalumnae	36.19	2.00e-160	558.00
IUUC-Lpe-051556	Leersia perrieri	56.63	0.00e+00	948.00
IUUC-Loc-052820	Lepisosteus oculatus	36.19	5.00e-157	547.00
IUUC-Lma-052961	Leptosphaeria maculans	29.59	4.00e-96	345.00
IUUC-Laf-054006	Loxodonta africana	36.18	3.00e-148	518.00
IUUC-Mcc-055037	Macaca mulatta	37.09	5.00e-158	551.00
IUUC-Mor-057280	Magnaporthe oryzae	28.96	4.00e-99	355.00
IUUC-Mpo-057408	Magnaporthe poae	29.13	2.00e-97	350.00
IUUC-Mtr-058473	Medicago truncatula	72.11	0.00e+00	1339.00
IUUC-Mla-058892	Melampsora laricipopulina	32.74	1.00e-112	400.00
IUUC-Mga-059598	Meleagris gallopavo	32.13	9.00e-116	410.00
IUUC-Mvi-060334	Microbotryum violaceum	32.27	2.00e-111	396.00
IUUC-Mmr-061239	Microcebus murinus	37.02	1.00e-155	543.00
IUUC-Mdo-062471	Monodelphis domestica	37.20	1.00e-152	533.00
IUUC-Mmu-063872	Mus musculus	36.90	1.00e-161	563.00
IUUC-Mac-064631	Musa acuminata	70.05	0.00e+00	1159.00
IUUC-Mpu-066039	Mustela putorius furo	37.74	8.00e-170	590.00
IUUC-Mlu-067485	Myotis lucifugus	37.34	9.00e-156	543.00
IUUC-Nfi-068319	Neosartorya fischeri	28.80	4.00e-95	342.00
IUUC-Ncr-068725	Neurospora crassa	30.10	1.00e-103	370.00
IUUC-Nle-069050	Nomascus leucogenys	36.88	6.00e-158	551.00
IUUC-Opr-070437	Ochotona princeps	42.18	4.00e-46	179.00
IUUC-Ont-071574	Oreochromis niloticus	35.26	1.00e-144	506.00
IUUC-Oan-072826	Ornithorhynchus anatinus	37.95	2.00e-165	575.00
IUUC-Ocu-073995	Oryctolagus cuniculus	36.66	5.00e-151	527.00
IUUC-Oba-075407	Oryza barthii	62.02	0.00e+00	1071.00
IUUC-Obr-076451	Oryza brachyantha	70.03	0.00e+00	1315.00
IUUC-Ogl-077535	Oryza glaberrima	68.67	0.00e+00	1254.00
IUUC-Ogu-077995	Oryza glumaepatula	61.42	0.00e+00	1073.00
IUUC-Oin-079431	Oryza indica	69.05	0.00e+00	1263.00
IUUC-Olo-080495	Oryza longistaminata	60.59	0.00e+00	1044.00
IUUC-Oni-082336	Oryza nivara	66.41	0.00e+00	1183.00
IUUC-Opu-084028	Oryza punctata	63.44	0.00e+00	1068.00
IUUC-Oru-084500	Oryza rufipogon	61.19	0.00e+00	1062.00
IUUC-Osa-086242	Oryza sativa	69.15	0.00e+00	1262.00
IUUC-Ola-086612	Oryzias latipes	35.75	2.00e-113	402.00
IUUC-Olu-087703	Ostreococcus lucimarinus	35.89	5.00e-155	541.00
IUUC-Oga-088572	Otolemur garnettii	36.88	3.00e-156	545.00
IUUC-Oar-090363	Ovis aries	38.14	1.00e-161	563.00
IUUC-Ptr-090477	Pan troglodytes	36.98	8.00e-157	547.00
IUUC-Pan-092914	Papio anubis	37.09	2.00e-158	552.00
IUUC-Psi-093019	Pelodiscus sinensis	36.48	9.00e-153	533.00
IUUC-Pma-094303	Petromyzon marinus	33.14	3.00e-125	442.00
IUUC-Pno-094938	Phaeosphaeria nodorum	29.18	2.00e-89	323.00
IUUC-Ppa-095720	Physcomitrella patens	52.99	0.00e+00	967.00
IUUC-Pfo-097034	Poecilia formosa	35.37	9.00e-137	480.00
IUUC-Pab-097669	Pongo abelii	37.20	2.00e-158	551.00
IUUC-Pop-098835	Populus trichocarpa	75.66	0.00e+00	1394.00
IUUC-Pca-101097	Procavia capensis	38.55	5.00e-62	232.00
IUUC-Ppe-101430	Prunus persica	75.00	0.00e+00	1414.00
IUUC-Pva-103152	Pteropus vampyrus	37.64	1.00e-161	563.00
IUUC-Pgr-103517	Puccinia graminis	31.22	1.00e-130	460.00
IUUC-Ptt-103697	Puccinia triticina	31.75	2.00e-101	363.00
IUUC-Pte-104121	Pyrenophora teres	29.15	1.00e-96	347.00
IUUC-Pyt-104672	Pyrenophora triticirepentis	29.14	4.00e-97	348.00
IUUC-Rno-105435	Rattus norvegicus	36.88	8.00e-158	550.00
IUUC-Sce-106202	Saccharomyces cerevisiae	30.85	8.00e-104	370.00
IUUC-Sha-107272	Sarcophilus harrisii	37.81	3.00e-147	515.00
IUUC-Sja-107744	Schizosaccharomyces japonicus	36.25	2.00e-155	542.00
IUUC-Spo-108256	Schizosaccharomyces pombe	36.52	3.00e-156	545.00
IUUC-Ssl-108618	Sclerotinia sclerotiorum	30.37	9.00e-119	421.00
IUUC-Smo-108762	Selaginella moellendorffii	56.22	0.00e+00	1002.00
IUUC-Sit-110051	Setaria italica	69.37	0.00e+00	1276.00
IUUC-Sly-111181	Solanum lycopersicum	72.84	0.00e+00	1333.00
IUUC-Stu-112018	Solanum tuberosum	73.30	0.00e+00	1339.00
IUUC-Sar-113348	Sorex araneus	35.92	2.00e-105	376.00
IUUC-Sbi-114282	Sorghum bicolor	69.33	0.00e+00	1293.00
IUUC-Sre-114946	Sporisorium reilianum	30.96	1.00e-81	297.00
IUUC-Ssc-115287	Sus scrofa	37.88	3.00e-159	555.00
IUUC-Tgu-117138	Taeniopygia guttata	35.76	5.00e-131	461.00
IUUC-Tru-118232	Takifugu rubripes	35.93	3.00e-141	495.00
IUUC-Tsy-119502	Tarsius syrichta	30.53	3.00e-108	385.00
IUUC-Tni-120378	Tetraodon nigroviridis	38.29	7.00e-143	500.00
IUUC-Tca-121506	Theobroma cacao	76.04	0.00e+00	1375.00
IUUC-Tre-122166	Trichoderma reesei	30.03	3.00e-112	399.00
IUUC-Tvi-122385	Trichoderma virens	30.19	2.00e-111	396.00
IUUC-Tae-122836	Triticum aestivum	68.02	0.00e+00	1294.00
IUUC-Tur-126490	Triticum urartu	59.14	0.00e+00	994.00
IUUC-Tme-127157	Tuber melanosporum	31.43	6.00e-118	417.00
IUUC-Tbe-127981	Tupaia belangeri	39.42	3.00e-134	472.00
IUUC-Ttr-128886	Tursiops truncatus	36.77	1.00e-153	536.00
IUUC-Uma-129439	Ustilago maydis	29.77	9.00e-90	324.00
IUUC-Vda-129760	Verticillium dahliae	30.75	3.00e-112	399.00
IUUC-Vpa-130456	Vicugna pacos	37.13	1.00e-157	549.00
IUUC-Vvi-131086	Vitis vinifera	74.67	0.00e+00	1405.00
IUUC-Xtr-131829	Xenopus tropicalis	37.46	2.00e-168	585.00
IUUC-Xma-133588	Xiphophorus maculatus	35.15	1.00e-135	476.00
IUUC-Yli-134328	Yarrowia lipolytica	32.14	1.00e-108	387.00
IUUC-Zma-135808	Zea mays	68.36	0.00e+00	1276.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence