iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-098969

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Zinc finger family protein

Genbank Nucleotide ID

CM000354

Gene Name

POPTRDRAFT_1105907; POPTR_0018s01110g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0018s01110	POPTR_0018s01110.1	POPTR_0018s01110.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	8.50e-08	33.7	359	400

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf..kdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C+iCl  +   d+++ lpC H+fh+dC+ kw       + +++CPlC+
   Q: 359  CCICLAKYanNDELRELPCSHFFHKDCVDKW------LKINASCPLCK 400
           ********98666******************......**********7 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MDVASTELHS ENQTDTFPLL MERQENPNSS EHIIDIRNEV SVSPSHNRIS TGLEASLHED 60
RPLSGVRAPT SPPPTSLSNG TNSRSSSLIR RGEARRRRSP LNSGLWISVE LVLTLSQIIA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TCCTTTGCTC GTAACAAATA ATATAAATAA AAATATAAAT ATTCCCTGAC CAGGTAGGGA 60
AGCAATGGAG GTCCAAAGCT GACTCTTCCT TTCTGTTTTT CTCTCCTTTT AAAACAAAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR011016--Znf_RING-CH
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING
SM00744--RINGv

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0018s01110g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002558	Amborella trichopoda	52.34	2.00e-106	378.00
IUUC-Cin-025569	Ciona intestinalis	33.33	4.00e-13	69.30
IUUC-Cme-027312	Cyanidioschyzon merolae	31.46	7.00e-20	90.90
IUUC-Dse-031512	Dothistroma septosporum	44.78	2.00e-09	56.60
IUUC-Gma-043223	Glycine max	63.48	2.00e-118	418.00
IUUC-Oin-079535	Oryza indica	53.70	2.00e-91	328.00
IUUC-Ome-081533	Oryza meridionalis	53.01	4.00e-89	321.00
IUUC-Oru-084956	Oryza rufipogon	53.47	2.00e-91	328.00
IUUC-Osa-085907	Oryza sativa	53.70	2.00e-91	328.00
IUUC-Ppe-102005	Prunus persica	70.36	2.00e-160	558.00
IUUC-Ptt-103787	Puccinia triticina	46.30	3.00e-11	61.20
IUUC-Smo-108799	Selaginella moellendorffii	61.78	2.00e-93	335.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence