iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Tca-121035

Ensembl Protein ID

EOY34269

UniProt Accession

A0A061H070; A0A061H070_THECC

Genbank Protein ID

EOY34269.1

Protein Name

RNA binding family protein, putative isoform 2

Genbank Nucleotide ID

CM001887

Gene Name

TCM_042001

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
TCM_042001	EOY34268	EOY34268
TCM_042001	EOY34269	EOY34269

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/RING/RING	40.75	6.00e-54	207.00	IUUC-Sce-106312

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Theobroma cacao

Protein Sequence
(Fasta)

MSDEGEKTCP LCEEDMDLTD QQLKPCKCGY EICVWCWHHI MDMAEKDETE GRCPACRSAY 60
DKERIVGMAA NCERLVAEIN MERKMKSQKA KTKSSEGRKQ LSSVRVIQRN LVYIVGLPLN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAGTGACG AGGGAGAAAA GACTTGCCCC CTATGCGAGG AGGACATGGA TTTGACTGAT 60
CAGCAACTCA AGCCTTGCAA ATGTGGTTAT GAGGTTTGAA GCAAAATACT CTTTTATTTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0694--RNA-binding

Interpro

IPR034261--CNOT4_RRM
IPR012677--Nucleotide-bd_a/b_plait
IPR000504--RRM_dom
IPR003954--RRM_dom_euk
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50102--RRM
PS50089--ZF_RING_2

Pfam

PF00076--RRM_1

SMART

SM00360--RRM
SM00361--RRM_1

Gene Ontology

GO:0000166--F:nucleotide binding
GO:0003723--F:RNA binding
GO:0008270--F:zinc ion binding

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000464	Aegilops tauschii	65.94	1.00e-120	427.00
IUUC-Aml-002384	Ailuropoda melanoleuca	44.35	2.00e-53	203.00
IUUC-Atr-002462	Amborella trichopoda	65.64	1.00e-141	497.00
IUUC-Apl-003756	Anas platyrhynchos	45.29	2.00e-54	206.00
IUUC-Aca-004643	Anolis carolinensis	44.74	2.00e-54	206.00
IUUC-Aly-006093	Arabidopsis lyrata	46.15	0.00e+00	632.00
IUUC-Ath-007371	Arabidopsis thaliana	49.20	0.00e+00	684.00
IUUC-Ago-007799	Ashbya gossypii	42.50	5.00e-52	198.00
IUUC-Acl-008077	Aspergillus clavatus	38.31	2.00e-45	177.00
IUUC-Afl-008720	Aspergillus flavus	36.45	2.00e-50	194.00
IUUC-Afu-008905	Aspergillus fumigatus	34.95	5.00e-46	179.00
IUUC-Ani-009264	Aspergillus nidulans	34.25	2.00e-31	130.00
IUUC-Ang-009537	Aspergillus niger	35.62	1.00e-51	198.00
IUUC-Aor-010123	Aspergillus oryzae	32.06	9.00e-34	139.00
IUUC-Ate-010409	Aspergillus terreus	34.59	1.00e-47	185.00
IUUC-Ame-011538	Astyanax mexicanus	43.86	5.00e-45	175.00
IUUC-Bgr-012062	Blumeria graminis	35.56	6.00e-52	199.00
IUUC-Bta-012419	Bos taurus	45.29	5.00e-54	204.00
IUUC-Bci-013633	Botrytis cinerea	38.27	1.00e-49	191.00
IUUC-Bdi-014913	Brachypodium distachyon	66.35	9.00e-120	424.00
IUUC-Bol-016407	Brassica oleracea	63.74	6.00e-150	524.00
IUUC-Bra-017755	Brassica rapa	47.76	0.00e+00	652.00
IUUC-Cel-018123	Caenorhabditis elegans	41.56	3.00e-50	192.00
IUUC-Cja-019705	Callithrix jacchus	45.29	4.00e-54	205.00
IUUC-Cfa-020440	Canis familiaris	45.29	4.00e-54	205.00
IUUC-Cpo-022091	Cavia porcellus	42.15	4.00e-52	198.00
IUUC-Csa-024202	Chlorocebus sabaeus	45.29	7.00e-54	204.00
IUUC-Cho-024410	Choloepus hoffmanni	42.25	6.00e-37	148.00
IUUC-Cin-025558	Ciona intestinalis	42.15	1.00e-54	206.00
IUUC-Cgl-026687	Colletotrichum gloeosporioides	39.75	1.00e-50	194.00
IUUC-Cne-027084	Cryptococcus neoformans	32.19	2.00e-42	166.00
IUUC-Cme-027148	Cyanidioschyzon merolae	27.32	7.00e-20	91.70
IUUC-Dre-028377	Danio rerio	44.74	8.00e-46	177.00
IUUC-Dno-029100	Dasypus novemcinctus	45.29	4.00e-54	205.00
IUUC-Dor-030310	Dipodomys ordii	43.48	2.00e-48	186.00
IUUC-Dse-031514	Dothistroma septosporum	37.84	2.00e-46	180.00
IUUC-Dme-031735	Drosophila melanogaster	44.00	7.00e-51	195.00
IUUC-Ete-033091	Echinops telfairi	39.04	2.00e-46	179.00
IUUC-Eca-033506	Equus caballus	45.29	8.00e-54	204.00
IUUC-Eeu-034506	Erinaceus europaeus	41.67	2.00e-47	183.00
IUUC-Fca-036033	Felis catus	45.29	5.00e-54	204.00
IUUC-Fal-037540	Ficedula albicollis	45.29	9.00e-55	207.00
IUUC-Fox-037944	Fusarium oxysporum	39.84	2.00e-53	203.00
IUUC-Fso-038172	Fusarium solani	38.52	1.00e-45	178.00
IUUC-Gmo-039211	Gadus morhua	44.84	7.00e-46	178.00
IUUC-Ggr-040096	Gaeumannomyces graminis	40.98	6.00e-54	206.00
IUUC-Gga-040487	Gallus gallus	45.29	1.00e-54	207.00
IUUC-Gac-042294	Gasterosteus aculeatus	43.95	2.00e-43	169.00
IUUC-Gma-043229	Glycine max	57.42	0.00e+00	840.00
IUUC-Ggo-044950	Gorilla gorilla	50.36	1.00e-38	153.00
IUUC-Hsa-046666	Homo sapiens	45.29	1.00e-53	203.00
IUUC-Hvu-047405	Hordeum vulgare	65.94	3.00e-121	429.00
IUUC-Itr-047888	Ictidomys tridecemlineatus	45.29	4.00e-51	193.00
IUUC-Kpa-049260	Komagataella pastoris	33.16	3.00e-50	192.00
IUUC-Lch-050203	Latimeria chalumnae	45.29	2.00e-54	206.00
IUUC-Lpe-051195	Leersia perrieri	64.00	9.00e-112	397.00
IUUC-Loc-052886	Lepisosteus oculatus	44.74	3.00e-46	179.00
IUUC-Lma-053073	Leptosphaeria maculans	37.02	2.00e-44	173.00
IUUC-Laf-053490	Loxodonta africana	45.29	4.00e-54	205.00
IUUC-Mcc-055724	Macaca mulatta	45.29	7.00e-54	204.00
IUUC-Meu-056787	Macropus eugenii	41.94	2.00e-21	96.70
IUUC-Mor-056921	Magnaporthe oryzae	40.16	7.00e-51	194.00
IUUC-Mpo-057616	Magnaporthe poae	40.98	2.00e-53	203.00
IUUC-Mtr-058426	Medicago truncatula	53.79	0.00e+00	773.00
IUUC-Mla-059146	Melampsora laricipopulina	32.73	3.00e-42	166.00
IUUC-Mga-059372	Meleagris gallopavo	45.29	2.00e-54	206.00
IUUC-Mvi-060479	Microbotryum violaceum	36.89	5.00e-32	133.00
IUUC-Mmr-061012	Microcebus murinus	45.29	5.00e-54	205.00
IUUC-Mdo-062330	Monodelphis domestica	44.74	3.00e-54	206.00
IUUC-Mmu-063894	Mus musculus	45.29	4.00e-54	205.00
IUUC-Mac-064805	Musa acuminata	70.59	5.00e-106	377.00
IUUC-Mpu-066894	Mustela putorius furo	45.29	4.00e-54	205.00
IUUC-Mlu-067321	Myotis lucifugus	45.29	7.00e-54	204.00
IUUC-Nfi-068451	Neosartorya fischeri	33.73	9.00e-46	179.00
IUUC-Ncr-068667	Neurospora crassa	37.23	4.00e-50	193.00
IUUC-Nle-070058	Nomascus leucogenys	44.30	1.00e-50	193.00
IUUC-Opr-071108	Ochotona princeps	47.17	7.00e-26	111.00
IUUC-Ont-071541	Oreochromis niloticus	44.39	7.00e-44	171.00
IUUC-Oan-073232	Ornithorhynchus anatinus	44.74	3.00e-54	206.00
IUUC-Ocu-074893	Oryctolagus cuniculus	45.29	7.00e-54	204.00
IUUC-Oba-075623	Oryza barthii	64.88	1.00e-62	233.00
IUUC-Obr-076653	Oryza brachyantha	64.50	2.00e-124	439.00
IUUC-Ogl-077946	Oryza glaberrima	68.57	3.00e-89	320.00
IUUC-Ogu-078775	Oryza glumaepatula	68.46	6.00e-113	399.00
IUUC-Oin-079214	Oryza indica	65.19	5.00e-125	441.00
IUUC-Olo-080799	Oryza longistaminata	52.91	3.00e-64	236.00
IUUC-Ome-081843	Oryza meridionalis	61.84	1.00e-120	426.00
IUUC-Oni-082944	Oryza nivara	64.88	8.00e-65	238.00
IUUC-Opu-083668	Oryza punctata	64.60	3.00e-124	439.00
IUUC-Oru-084249	Oryza rufipogon	45.56	3.00e-64	239.00
IUUC-Osa-086233	Oryza sativa	65.19	3.00e-125	442.00
IUUC-Ola-087121	Oryzias latipes	44.39	5.00e-44	171.00
IUUC-Olu-087772	Ostreococcus lucimarinus	42.52	6.00e-47	179.00
IUUC-Oga-088556	Otolemur garnettii	45.29	5.00e-54	205.00
IUUC-Oar-089768	Ovis aries	45.29	6.00e-54	204.00
IUUC-Ptr-090585	Pan troglodytes	45.29	7.00e-54	204.00
IUUC-Pan-092625	Papio anubis	45.29	7.00e-54	204.00
IUUC-Psi-093462	Pelodiscus sinensis	45.29	3.00e-54	206.00
IUUC-Pma-094468	Petromyzon marinus	44.59	2.00e-47	183.00
IUUC-Pno-094812	Phaeosphaeria nodorum	31.78	5.00e-22	100.00
IUUC-Pfo-096762	Poecilia formosa	44.39	1.00e-43	170.00
IUUC-Pab-097890	Pongo abelii	45.29	7.00e-54	204.00
IUUC-Pop-099764	Populus trichocarpa	63.43	0.00e+00	929.00
IUUC-Pca-101121	Procavia capensis	48.91	2.00e-34	140.00
IUUC-Ppe-102076	Prunus persica	63.36	0.00e+00	944.00
IUUC-Pva-102489	Pteropus vampyrus	44.35	2.00e-53	202.00
IUUC-Pgr-103568	Puccinia graminis	32.91	3.00e-42	166.00
IUUC-Ptt-103721	Puccinia triticina	29.84	7.00e-24	105.00
IUUC-Pte-104118	Pyrenophora teres	38.72	2.00e-48	186.00
IUUC-Pyt-104612	Pyrenophora triticirepentis	34.91	6.00e-50	191.00
IUUC-Rno-105627	Rattus norvegicus	44.74	6.00e-54	204.00
IUUC-Sce-106312	Saccharomyces cerevisiae	39.25	5.00e-51	194.00
IUUC-Sha-106619	Sarcophilus harrisii	44.74	3.00e-54	206.00
IUUC-Sja-107765	Schizosaccharomyces japonicus	39.29	1.00e-49	190.00
IUUC-Spo-108328	Schizosaccharomyces pombe	40.78	8.00e-51	193.00
IUUC-Ssl-108577	Sclerotinia sclerotiorum	38.27	9.00e-45	174.00
IUUC-Smo-108760	Selaginella moellendorffii	54.17	1.00e-79	288.00
IUUC-Sit-109923	Setaria italica	62.07	2.00e-120	426.00
IUUC-Sly-110900	Solanum lycopersicum	63.23	3.00e-114	405.00
IUUC-Stu-112226	Solanum tuberosum	67.92	1.00e-114	407.00
IUUC-Sar-113620	Sorex araneus	44.74	2.00e-52	199.00
IUUC-Sbi-114318	Sorghum bicolor	62.87	3.00e-123	436.00
IUUC-Sre-114956	Sporisorium reilianum	43.88	4.00e-56	212.00
IUUC-Ssc-116116	Sus scrofa	45.29	3.00e-51	194.00
IUUC-Tgu-117357	Taeniopygia guttata	45.29	1.00e-54	207.00
IUUC-Tru-118759	Takifugu rubripes	44.84	4.00e-45	175.00
IUUC-Tsy-119387	Tarsius syrichta	44.35	3.00e-53	202.00
IUUC-Tni-120536	Tetraodon nigroviridis	42.60	1.00e-44	173.00
IUUC-Tre-121996	Trichoderma reesei	38.93	2.00e-46	181.00
IUUC-Tvi-122371	Trichoderma virens	40.16	1.00e-51	198.00
IUUC-Tae-124373	Triticum aestivum	64.20	2.00e-121	429.00
IUUC-Tur-126324	Triticum urartu	64.20	5.00e-121	428.00
IUUC-Tme-127072	Tuber melanosporum	35.89	3.00e-38	153.00
IUUC-Tbe-128107	Tupaia belangeri	41.74	6.00e-50	191.00
IUUC-Ttr-128846	Tursiops truncatus	44.74	4.00e-53	202.00
IUUC-Uma-129607	Ustilago maydis	43.88	6.00e-56	212.00
IUUC-Vda-129971	Verticillium dahliae	36.07	1.00e-41	165.00
IUUC-Vpa-130298	Vicugna pacos	40.00	2.00e-43	169.00
IUUC-Vvi-131651	Vitis vinifera	62.06	0.00e+00	977.00
IUUC-Xtr-132728	Xenopus tropicalis	45.29	8.00e-54	204.00
IUUC-Xma-133789	Xiphophorus maculatus	44.39	1.00e-43	170.00
IUUC-Yli-134461	Yarrowia lipolytica	39.57	6.00e-44	171.00
IUUC-Zma-135031	Zea mays	63.88	6.00e-123	434.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence