iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Obr-076201

Ensembl Protein ID

OB02G17560.1

UniProt Accession

J3LAT9; J3LAT9_ORYBR

Protein Name

Coatomer subunit beta'

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
OB02G17560	OB02G17560.1	OB02G17560.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.50e-34	116.0	227	258
UBD/Beta-Prp	2.40e-66	224.6	14	288

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDl 30
           gH+  +++++f ++ +++++Gs Dgt+++W  
   Q: 227  GHAHNISAVCFhPElPIILTGSEDGTVRLWHS 258
           8***********999***************75 PP

UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfsps 105
           +++++++v+ +p +++++++ ++g++ +w+++t+++++s++  e +v++ kf+ ++++ v g++D++i+v++++t + v ++++h+d++++++++p+
   Q: 14   RSERVKSVDLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSSKFIARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPT 110
           5678999****************************************************************************************** PP
   S: 106  gdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvysls..fdsngkelvsgs 199
           + +++s s+d  i++wd+e+g+   ++++gh++ v+ v+++p++ n ++s+slDrtv++W+l + +   tl g h + v++++     ++++l++gs
   Q: 111  QPFVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDtNTFASASLDRTVKVWSLGSPDPNFTLDG-HSKGVNCVDyfTGGDRPYLITGS 206
           **********************9999**********************************************9.*********7445566******* PP
   S: 200  ldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlv 281
           +d+t k+wd+qt++cv+tl gh  n++ v f+p+  ++++gs+Dg++r+W +++  l +tl++  ++v++  +++ +++v++
   Q: 207  DDQTAKVWDYQTKSCVQTLDGHAHNISAVCFHPELPIILTGSEDGTVRLWHSTTYRLENTLNYGLERVWALGYMKGSRRVVI 288
           *********************************************************************9999666666654 PP

Organism

Oryza brachyantha

Functional Description
(View)

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Protein Sequence
(Fasta)

MPLRLDIKRK LAQRSERVKS VDLHPTEPWI LSSLYSGSVC IWNYQTQTMV KSFEVTELPV 60
RSSKFIARKQ WVVAGADDMF IRVYNYNTMD KVKVFEAHTD YIRCVAVHPT QPFVLSSSDD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGTACGTA CGCCCCTCCC TCTCGCTCGC ATTCCGCGCC GGACGCCTCC CTCGTCCCCG 60
GGCTCGAGTT GTCTAGGTTT CGGCGCGAAT GGGGGATGCT GGGCCGTTCG TATCGCGCCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030663--C:COPI-coated vesicle membrane
GO:0000139--C:Golgi membrane
GO:0030117--C:membrane coat
GO:0005198--F:structural molecule activity
GO:0006886--P:intracellular protein transport
GO:0016192--P:vesicle-mediated transport

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000654	Aegilops tauschii	73.18	0.00e+00	1358.00
IUUC-Aml-002154	Ailuropoda melanoleuca	61.75	0.00e+00	1101.00
IUUC-Apl-003976	Anas platyrhynchos	61.09	0.00e+00	1105.00
IUUC-Aca-004301	Anolis carolinensis	61.02	0.00e+00	1108.00
IUUC-Ath-007630	Arabidopsis thaliana	79.24	0.00e+00	1487.00
IUUC-Acl-008237	Aspergillus clavatus	53.21	0.00e+00	897.00
IUUC-Afu-008845	Aspergillus fumigatus	51.58	0.00e+00	883.00
IUUC-Ani-009135	Aspergillus nidulans	54.41	0.00e+00	872.00
IUUC-Ang-009654	Aspergillus niger	56.02	0.00e+00	810.00
IUUC-Ame-010922	Astyanax mexicanus	54.55	0.00e+00	959.00
IUUC-Bra-017758	Brassica rapa	79.43	0.00e+00	1486.00
IUUC-Cja-019145	Callithrix jacchus	61.68	0.00e+00	1102.00
IUUC-Cre-022938	Chlamydomonas reinhardtii	67.31	0.00e+00	1103.00
IUUC-Csv-026012	Ciona savignyi	58.15	0.00e+00	969.00
IUUC-Cme-027219	Cyanidioschyzon merolae	52.24	0.00e+00	869.00
IUUC-Dre-027846	Danio rerio	61.96	0.00e+00	1104.00
IUUC-Dse-031268	Dothistroma septosporum	52.32	0.00e+00	869.00
IUUC-Dme-031791	Drosophila melanogaster	57.86	0.00e+00	1011.00
IUUC-Eeu-035086	Erinaceus europaeus	50.53	4.00e-121	428.00
IUUC-Fal-037202	Ficedula albicollis	60.37	0.00e+00	1055.00
IUUC-Gmo-039046	Gadus morhua	60.85	0.00e+00	1097.00
IUUC-Gga-041112	Gallus gallus	61.73	0.00e+00	1113.00
IUUC-Gac-041733	Gasterosteus aculeatus	60.83	0.00e+00	1063.00
IUUC-Gma-042910	Glycine max	83.57	0.00e+00	1561.00
IUUC-Itr-048212	Ictidomys tridecemlineatus	61.02	0.00e+00	1102.00
IUUC-Loc-052675	Lepisosteus oculatus	60.63	0.00e+00	1106.00
IUUC-Laf-053757	Loxodonta africana	61.72	0.00e+00	1097.00
IUUC-Meu-056174	Macropus eugenii	52.39	5.00e-105	374.00
IUUC-Mla-058937	Melampsora laricipopulina	52.92	0.00e+00	885.00
IUUC-Mga-059875	Meleagris gallopavo	61.47	0.00e+00	1108.00
IUUC-Mmr-061261	Microcebus murinus	61.80	0.00e+00	1103.00
IUUC-Mdo-062076	Monodelphis domestica	62.04	0.00e+00	1108.00
IUUC-Mmu-063324	Mus musculus	61.80	0.00e+00	1105.00
IUUC-Mac-064636	Musa acuminata	83.97	0.00e+00	1566.00
IUUC-Ncr-068659	Neurospora crassa	52.76	0.00e+00	875.00
IUUC-Ont-071563	Oreochromis niloticus	61.84	0.00e+00	1103.00
IUUC-Oba-075751	Oryza barthii	89.82	0.00e+00	1635.00
IUUC-Oin-079856	Oryza indica	94.44	0.00e+00	1719.00
IUUC-Ome-081554	Oryza meridionalis	90.00	0.00e+00	1617.00
IUUC-Oru-085196	Oryza rufipogon	92.01	0.00e+00	1669.00
IUUC-Pan-092011	Papio anubis	61.68	0.00e+00	1102.00
IUUC-Psi-093308	Pelodiscus sinensis	61.26	0.00e+00	1108.00
IUUC-Ppa-095911	Physcomitrella patens	75.14	0.00e+00	1358.00
IUUC-Pab-097926	Pongo abelii	59.88	0.00e+00	1030.00
IUUC-Pop-099634	Populus trichocarpa	82.56	0.00e+00	1530.00
IUUC-Pca-100965	Procavia capensis	60.79	0.00e+00	1065.00
IUUC-Sha-106905	Sarcophilus harrisii	62.04	0.00e+00	1109.00
IUUC-Sja-107838	Schizosaccharomyces japonicus	45.76	0.00e+00	758.00
IUUC-Sly-111775	Solanum lycopersicum	81.76	0.00e+00	1530.00
IUUC-Sbi-113801	Sorghum bicolor	89.47	0.00e+00	1657.00
IUUC-Tgu-117239	Taeniopygia guttata	61.33	0.00e+00	1108.00
IUUC-Tru-118025	Takifugu rubripes	60.64	0.00e+00	1093.00
IUUC-Tre-122072	Trichoderma reesei	52.91	0.00e+00	864.00
IUUC-Tvi-122546	Trichoderma virens	51.44	0.00e+00	848.00
IUUC-Tur-126283	Triticum urartu	73.75	0.00e+00	1358.00
IUUC-Vpa-130037	Vicugna pacos	51.06	6.00e-125	441.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence