iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Vvi-131211

Ensembl Protein ID

VIT_00s0227g00060.t01

UniProt Accession

F6HCQ7; F6HCQ7_VITVI

Genbank Protein ID

CCB50002.1

Protein Name

Ribosome biogenesis protein BOP1 homolog

Genbank Nucleotide ID

FN595520

Gene Name

VIT_00s0227g00060

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
VIT_00s0227g00060	VIT_00s0227g00060.t01	VIT_00s0227g00060.t01

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.20e-10	39.8	383	420

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlrtgvll 36
           gH++ v ++a   s+  ++sGs Dg+++vW++ tg++ 
   Q: 383  GHKGAVMSIATeaSGQWIASGSIDGSVRVWEVETGRCR 420
           8999999*999987799******************995 PP

Organism

Vitis vinifera

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MAKRETPRLD SLNKKKKEKE KKEESSKHQQ EENVDDKQLH QGFSGDEEEL TESESDGPVL 60
SEDEDYVSAD GDDSLHNDPS EENEGGSSES HQGIEESDSS EDEVAPRNTI GDVPLEWYKD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCGCCCACAA CACAACGGAC CTTCTCCCTC AGCCTCCGCG TAGAGGGAAA CAGAGATGGC 60
GAAGAGAGAG ACTCCTCGGT TGGACTCACT GAATAAGAAG AAAAAGGAGA AGGAGAAGAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08145--BOP1NT
PF00400--WD40

SMART

SM01035--BOP1NT
SM00320--WD40

Gene Ontology

GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001158	Aegilops tauschii	62.04	0.00e+00	725.00
IUUC-Aml-001507	Ailuropoda melanoleuca	43.44	2.00e-124	438.00
IUUC-Atr-003141	Amborella trichopoda	69.79	2.00e-177	614.00
IUUC-Apl-003545	Anas platyrhynchos	41.35	3.00e-116	411.00
IUUC-Aly-005649	Arabidopsis lyrata	71.55	0.00e+00	886.00
IUUC-Ath-007625	Arabidopsis thaliana	67.71	0.00e+00	851.00
IUUC-Ago-007958	Ashbya gossypii	39.06	4.00e-123	434.00
IUUC-Acl-008344	Aspergillus clavatus	39.97	2.00e-109	389.00
IUUC-Afl-008616	Aspergillus flavus	40.58	9.00e-112	397.00
IUUC-Afu-009083	Aspergillus fumigatus	39.75	1.00e-104	373.00
IUUC-Ani-009365	Aspergillus nidulans	40.45	2.00e-112	399.00
IUUC-Ang-009796	Aspergillus niger	41.00	1.00e-108	386.00
IUUC-Aor-010015	Aspergillus oryzae	40.58	1.00e-111	396.00
IUUC-Ate-010537	Aspergillus terreus	40.00	5.00e-114	404.00
IUUC-Ame-011767	Astyanax mexicanus	44.86	9.00e-50	189.00
IUUC-Bgr-012286	Blumeria graminis	40.69	1.00e-121	429.00
IUUC-Bta-013569	Bos taurus	46.64	4.00e-140	491.00
IUUC-Bci-013820	Botrytis cinerea	38.92	3.00e-109	388.00
IUUC-Bdi-014895	Brachypodium distachyon	65.93	0.00e+00	791.00
IUUC-Bol-016099	Brassica oleracea	73.69	0.00e+00	907.00
IUUC-Bra-017174	Brassica rapa	73.91	0.00e+00	917.00
IUUC-Cel-018201	Caenorhabditis elegans	39.39	1.00e-108	386.00
IUUC-Cja-019009	Callithrix jacchus	41.41	3.00e-122	431.00
IUUC-Cfa-020173	Canis familiaris	42.41	7.00e-127	446.00
IUUC-Cpo-021796	Cavia porcellus	45.03	2.00e-134	472.00
IUUC-Cre-022650	Chlamydomonas reinhardtii	47.80	7.00e-152	530.00
IUUC-Csa-023440	Chlorocebus sabaeus	44.65	3.00e-140	491.00
IUUC-Cin-025782	Ciona intestinalis	42.06	1.00e-130	459.00
IUUC-Csv-026352	Ciona savignyi	40.58	4.00e-126	444.00
IUUC-Cgl-026393	Colletotrichum gloeosporioides	37.12	3.00e-92	331.00
IUUC-Cne-027004	Cryptococcus neoformans	41.72	5.00e-131	461.00
IUUC-Cme-027242	Cyanidioschyzon merolae	33.84	6.00e-89	321.00
IUUC-Dre-028658	Danio rerio	45.45	1.00e-141	496.00
IUUC-Dno-028883	Dasypus novemcinctus	45.82	7.00e-141	493.00
IUUC-Dor-031031	Dipodomys ordii	44.39	2.00e-141	495.00
IUUC-Dse-031443	Dothistroma septosporum	38.71	4.00e-115	407.00
IUUC-Dme-031786	Drosophila melanogaster	41.49	1.00e-133	469.00
IUUC-Eca-033677	Equus caballus	43.69	4.00e-140	491.00
IUUC-Eeu-035310	Erinaceus europaeus	43.17	1.00e-110	392.00
IUUC-Fca-035888	Felis catus	44.74	2.00e-136	478.00
IUUC-Fal-037438	Ficedula albicollis	45.68	9.00e-105	373.00
IUUC-Fox-037973	Fusarium oxysporum	40.38	5.00e-122	431.00
IUUC-Fso-038187	Fusarium solani	40.03	2.00e-119	422.00
IUUC-Gmo-039114	Gadus morhua	41.85	4.00e-121	427.00
IUUC-Ggr-039746	Gaeumannomyces graminis	39.15	3.00e-120	425.00
IUUC-Gga-040631	Gallus gallus	47.17	4.00e-70	257.00
IUUC-Gac-042582	Gasterosteus aculeatus	44.07	1.00e-131	462.00
IUUC-Gma-044307	Glycine max	75.28	0.00e+00	954.00
IUUC-Ggo-045587	Gorilla gorilla	44.65	6.00e-140	490.00
IUUC-Hsa-046319	Homo sapiens	44.65	8.00e-140	490.00
IUUC-Hvu-047526	Hordeum vulgare	64.31	0.00e+00	766.00
IUUC-Itr-048683	Ictidomys tridecemlineatus	45.30	7.00e-138	483.00
IUUC-Kpa-049221	Komagataella pastoris	38.53	2.00e-111	396.00
IUUC-Lch-049640	Latimeria chalumnae	45.45	1.00e-144	506.00
IUUC-Lpe-051135	Leersia perrieri	63.73	0.00e+00	739.00
IUUC-Loc-051930	Lepisosteus oculatus	46.21	6.00e-148	516.00
IUUC-Lma-053290	Leptosphaeria maculans	40.64	6.00e-107	380.00
IUUC-Laf-053903	Loxodonta africana	41.33	1.00e-119	422.00
IUUC-Mcc-055471	Macaca mulatta	44.48	5.00e-140	490.00
IUUC-Meu-056190	Macropus eugenii	44.09	2.00e-134	472.00
IUUC-Mor-057135	Magnaporthe oryzae	39.65	5.00e-114	404.00
IUUC-Mpo-057475	Magnaporthe poae	38.33	1.00e-114	406.00
IUUC-Mtr-058689	Medicago truncatula	71.18	0.00e+00	876.00
IUUC-Mla-059149	Melampsora laricipopulina	44.48	1.00e-129	456.00
IUUC-Mga-059645	Meleagris gallopavo	43.20	3.00e-44	170.00
IUUC-Mvi-060485	Microbotryum violaceum	42.22	2.00e-111	397.00
IUUC-Mmr-061674	Microcebus murinus	45.15	2.00e-133	468.00
IUUC-Mdo-062973	Monodelphis domestica	43.70	3.00e-139	488.00
IUUC-Mmu-064180	Mus musculus	43.77	9.00e-136	476.00
IUUC-Mac-064535	Musa acuminata	64.97	0.00e+00	699.00
IUUC-Mpu-066406	Mustela putorius furo	45.48	3.00e-142	498.00
IUUC-Mlu-067795	Myotis lucifugus	45.79	3.00e-132	465.00
IUUC-Nfi-068516	Neosartorya fischeri	38.83	4.00e-99	355.00
IUUC-Ncr-068767	Neurospora crassa	40.54	6.00e-108	384.00
IUUC-Opr-071084	Ochotona princeps	42.24	7.00e-59	220.00
IUUC-Ont-071614	Oreochromis niloticus	44.80	8.00e-142	496.00
IUUC-Oba-075980	Oryza barthii	63.73	0.00e+00	739.00
IUUC-Obr-076799	Oryza brachyantha	65.42	0.00e+00	795.00
IUUC-Ogl-077134	Oryza glaberrima	66.27	0.00e+00	780.00
IUUC-Ogu-078655	Oryza glumaepatula	64.69	0.00e+00	767.00
IUUC-Oin-079654	Oryza indica	66.27	0.00e+00	779.00
IUUC-Olo-080706	Oryza longistaminata	63.90	0.00e+00	741.00
IUUC-Ome-081716	Oryza meridionalis	53.05	5.00e-165	573.00
IUUC-Oni-082508	Oryza nivara	64.18	0.00e+00	742.00
IUUC-Opu-083707	Oryza punctata	63.73	0.00e+00	737.00
IUUC-Oru-084453	Oryza rufipogon	63.90	0.00e+00	741.00
IUUC-Osa-085811	Oryza sativa	66.10	0.00e+00	779.00
IUUC-Ola-087361	Oryzias latipes	45.91	1.00e-143	502.00
IUUC-Oga-088015	Otolemur garnettii	45.21	1.00e-138	486.00
IUUC-Oar-090058	Ovis aries	53.62	3.00e-33	135.00
IUUC-Ptr-090631	Pan troglodytes	42.63	4.00e-60	224.00
IUUC-Pan-092306	Papio anubis	44.57	5.00e-139	487.00
IUUC-Pma-094622	Petromyzon marinus	43.53	8.00e-139	486.00
IUUC-Pno-094794	Phaeosphaeria nodorum	37.48	2.00e-100	359.00
IUUC-Ppa-095528	Physcomitrella patens	53.04	2.00e-156	545.00
IUUC-Pfo-096682	Poecilia formosa	45.27	3.00e-141	494.00
IUUC-Pab-097939	Pongo abelii	43.38	5.00e-121	427.00
IUUC-Pop-099043	Populus trichocarpa	82.41	0.00e+00	892.00
IUUC-Pca-100333	Procavia capensis	44.53	9.00e-140	489.00
IUUC-Ppe-102078	Prunus persica	74.68	0.00e+00	887.00
IUUC-Pgr-103525	Puccinia graminis	40.38	2.00e-116	412.00
IUUC-Ptt-103929	Puccinia triticina	40.60	5.00e-116	411.00
IUUC-Pte-104029	Pyrenophora teres	40.58	5.00e-120	424.00
IUUC-Pyt-104446	Pyrenophora triticirepentis	40.42	2.00e-119	422.00
IUUC-Rno-105248	Rattus norvegicus	44.78	2.00e-138	485.00
IUUC-Sce-106381	Saccharomyces cerevisiae	39.13	3.00e-117	415.00
IUUC-Sha-106519	Sarcophilus harrisii	44.10	1.00e-141	495.00
IUUC-Sja-107908	Schizosaccharomyces japonicus	39.04	1.00e-112	399.00
IUUC-Spo-108071	Schizosaccharomyces pombe	40.03	1.00e-110	392.00
IUUC-Smo-109604	Selaginella moellendorffii	60.83	0.00e+00	711.00
IUUC-Sit-110551	Setaria italica	65.14	0.00e+00	778.00
IUUC-Sly-110970	Solanum lycopersicum	73.07	7.00e-167	579.00
IUUC-Stu-112593	Solanum tuberosum	75.27	0.00e+00	977.00
IUUC-Sar-113123	Sorex araneus	41.50	2.00e-48	184.00
IUUC-Sbi-113945	Sorghum bicolor	66.22	0.00e+00	799.00
IUUC-Sre-115188	Sporisorium reilianum	37.48	3.00e-114	405.00
IUUC-Ssc-115352	Sus scrofa	45.36	5.00e-140	490.00
IUUC-Tru-117685	Takifugu rubripes	45.14	1.00e-140	493.00
IUUC-Tni-119982	Tetraodon nigroviridis	45.33	4.00e-137	481.00
IUUC-Tca-121664	Theobroma cacao	78.77	0.00e+00	1025.00
IUUC-Tre-122229	Trichoderma reesei	38.69	1.00e-104	373.00
IUUC-Tvi-122576	Trichoderma virens	39.68	9.00e-107	380.00
IUUC-Tae-124110	Triticum aestivum	65.60	0.00e+00	740.00
IUUC-Tur-126781	Triticum urartu	62.71	0.00e+00	716.00
IUUC-Tme-127080	Tuber melanosporum	42.90	1.00e-131	462.00
IUUC-Ttr-128514	Tursiops truncatus	43.64	4.00e-97	348.00
IUUC-Uma-129556	Ustilago maydis	38.10	2.00e-113	402.00
IUUC-Vda-129715	Verticillium dahliae	41.61	2.00e-118	419.00
IUUC-Xma-133883	Xiphophorus maculatus	45.21	4.00e-135	474.00
IUUC-Yli-134438	Yarrowia lipolytica	39.63	7.00e-112	397.00
IUUC-Zma-135341	Zea mays	61.18	0.00e+00	788.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence