iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Zma-135612

Ensembl Protein ID

Zm00001d039411_T013

UniProt Accession

A0A1D6MGB6; A0A1D6MGB6_MAIZE

Genbank Protein ID

ONM28594.1; ONM28595.1; ONM28596.1; ONM28597.1; ONM28598.1; ONM28600.1

Protein Name

Coatomer subunit alpha

Genbank Nucleotide ID

CM007649; CM007649; CM007649; CM007649; CM007649; CM007649

Gene Name

ZEAMMB73_Zm00001d039411

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d039411	Zm00001d039411_T013	Zm00001d039411_T013
Zm00001d039411	Zm00001d039411_T002	Zm00001d039411_T002
Zm00001d039411	Zm00001d039411_T010	Zm00001d039411_T010
Zm00001d039411	Zm00001d039411_T011	Zm00001d039411_T011
Zm00001d039411	Zm00001d039411_T016	Zm00001d039411_T016

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.10e-39	134.6	50	86
UBD/Beta-Prp	2.60e-77	261.9	3	323

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sdtllvsGsdDgtikvWDlrtgvll 36
           H ++v++++f  + +l+vsG+dD +ikvW+++t+++l
   Q: 50   HDGPVRGVHFhaTQPLFVSGGDDYKIKVWNYKTQRCL 86
           99*********6449********************98 PP

UBD/Beta-Prp

   S: 4    tlkghhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkgh 93
           t +++++++++ ++f+p +++++++  +g ++ wd+++g+ll ++ +h+++v+ v f+ +++++v+g++D+ ikvw+++t  c+ tl+gh
   Q: 3    TKFETKSNRVKGLAFHPRRPWILSSLHSGVVQMWDYRMGTLLNRFDEHDGPVRGVHFHATQPLFVSGGDDYKIKVWNYKTQRCLFTLHGH 92
           67889999********************************************************************************** PP
   S: 94   edsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdl................. 166
            d++++++f+ +  ++vs+s+d+tir+w++++++c+  +l+gh++ v+c+++hp+++l+vs+slD+tvr+Wd+                 
   Q: 93   LDYIRTVQFHHECPWIVSASDDQTIRIWNWQSRTCVA-VLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIgalrkksaspaddilrl 181
           *************************************.********************************************99999966 PP
   S: 167  .........ktgkllrtl.......tgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgec..vrtlnghtdnvksvrfspnderlv 238
                                     +gh++ v++ sf+++ + +vsg++d++vk+w +  ++   v+tl+gh +nv++v f+ +++++v
   Q: 182  tqmntdlfgG-------IdavvkyvLEGHDRGVNWASFHPTLPLIVSGADDRQVKIWRMNDTKAweVDTLRGHMNNVSCVMFHAKQDIIV 264
           6666665553.......04444445555********************************777668************************ PP
   S: 239  sgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlvlgsedskvniwklkknep 299
           s s+D+sir+Wd ++++ ++t+ +++++++  a+ +++ n l++g  ds   ++kl++++p
   Q: 265  SNSEDKSIRVWDATKRTGIQTFRREHDRFWILAA-HPEMNLLAAG-HDSGMIVFKLERERP 323
           **********************************.6666655555.689999999988765 PP

Organism

Zea mays

Functional Description
(View)

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network.

Protein Sequence
(Fasta)

MLTKFETKSN RVKGLAFHPR RPWILSSLHS GVVQMWDYRM GTLLNRFDEH DGPVRGVHFH 60
ATQPLFVSGG DDYKIKVWNY KTQRCLFTLH GHLDYIRTVQ FHHECPWIVS ASDDQTIRIW 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CACTCGCTGC ACCTGCAGTT TCCTTCTCCG GGATCTCAAT TCTCATCTGG GAGAGGGCGG 60
GCGAGATCCA TTCCAGTCGC CCCCATTCAC TCCCCTTCCT CGTCCGTCCT CTTCCTCCCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR016391--Coatomer_asu
IPR010714--Coatomer_asu_C
IPR006692--Coatomer_WD-assoc_reg
IPR020472--G-protein_beta_WD-40_rep
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF06957--COPI_C
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030126--C:COPI vesicle coat
GO:0000139--C:Golgi membrane
GO:0005198--F:structural molecule activity
GO:0006886--P:intracellular protein transport
GO:0016192--P:vesicle-mediated transport

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000064	Aegilops tauschii	89.07	0.00e+00	2215.00
IUUC-Aml-001758	Ailuropoda melanoleuca	53.85	0.00e+00	1328.00
IUUC-Atr-002493	Amborella trichopoda	78.26	0.00e+00	1939.00
IUUC-Aly-006020	Arabidopsis lyrata	75.76	0.00e+00	1901.00
IUUC-Ath-007058	Arabidopsis thaliana	75.53	0.00e+00	1906.00
IUUC-Ago-007992	Ashbya gossypii	43.01	0.00e+00	971.00
IUUC-Acl-008027	Aspergillus clavatus	53.98	0.00e+00	949.00
IUUC-Afl-008644	Aspergillus flavus	54.98	0.00e+00	957.00
IUUC-Afu-008964	Aspergillus fumigatus	54.27	0.00e+00	954.00
IUUC-Ani-009379	Aspergillus nidulans	54.51	0.00e+00	959.00
IUUC-Ang-009756	Aspergillus niger	54.70	0.00e+00	959.00
IUUC-Aor-010174	Aspergillus oryzae	54.98	0.00e+00	957.00
IUUC-Ate-010302	Aspergillus terreus	46.73	0.00e+00	1130.00
IUUC-Ame-011229	Astyanax mexicanus	52.59	0.00e+00	1293.00
IUUC-Bgr-012300	Blumeria graminis	46.27	0.00e+00	1058.00
IUUC-Bta-012524	Bos taurus	54.32	0.00e+00	1323.00
IUUC-Bci-013781	Botrytis cinerea	54.68	0.00e+00	955.00
IUUC-Bdi-014549	Brachypodium distachyon	87.36	0.00e+00	2234.00
IUUC-Bol-015925	Brassica oleracea	81.80	0.00e+00	1449.00
IUUC-Bra-016978	Brassica rapa	75.25	0.00e+00	1896.00
IUUC-Cel-018115	Caenorhabditis elegans	53.97	0.00e+00	922.00
IUUC-Cja-019107	Callithrix jacchus	53.41	0.00e+00	1318.00
IUUC-Cfa-020675	Canis familiaris	53.59	0.00e+00	1301.00
IUUC-Cpo-021813	Cavia porcellus	54.05	0.00e+00	1336.00
IUUC-Cre-022969	Chlamydomonas reinhardtii	68.27	0.00e+00	1215.00
IUUC-Csa-023523	Chlorocebus sabaeus	54.49	0.00e+00	1344.00
IUUC-Cho-024704	Choloepus hoffmanni	69.55	9.00e-131	461.00
IUUC-Cin-025572	Ciona intestinalis	50.20	0.00e+00	1229.00
IUUC-Csv-025864	Ciona savignyi	55.71	0.00e+00	954.00
IUUC-Cgl-026510	Colletotrichum gloeosporioides	54.98	0.00e+00	966.00
IUUC-Cne-027053	Cryptococcus neoformans	56.77	0.00e+00	1001.00
IUUC-Dre-027421	Danio rerio	53.18	0.00e+00	1311.00
IUUC-Dno-029303	Dasypus novemcinctus	54.41	0.00e+00	1338.00
IUUC-Dse-031543	Dothistroma septosporum	45.04	0.00e+00	1034.00
IUUC-Dme-031945	Drosophila melanogaster	59.13	0.00e+00	996.00
IUUC-Ete-032873	Echinops telfairi	58.38	0.00e+00	1012.00
IUUC-Eca-033773	Equus caballus	53.14	0.00e+00	1297.00
IUUC-Fal-037263	Ficedula albicollis	50.24	0.00e+00	1183.00
IUUC-Fox-037738	Fusarium oxysporum	46.83	0.00e+00	1116.00
IUUC-Fso-038153	Fusarium solani	46.67	0.00e+00	1099.00
IUUC-Gmo-039602	Gadus morhua	50.08	0.00e+00	1203.00
IUUC-Ggr-039931	Gaeumannomyces graminis	53.84	0.00e+00	952.00
IUUC-Gga-040590	Gallus gallus	53.89	0.00e+00	1339.00
IUUC-Gac-041318	Gasterosteus aculeatus	53.28	0.00e+00	1313.00
IUUC-Gma-043894	Glycine max	75.47	0.00e+00	1941.00
IUUC-Ggo-045029	Gorilla gorilla	54.09	0.00e+00	1335.00
IUUC-Hsa-046078	Homo sapiens	54.01	0.00e+00	1334.00
IUUC-Hvu-047556	Hordeum vulgare	87.27	0.00e+00	2235.00
IUUC-Kpa-049256	Komagataella pastoris	44.84	0.00e+00	1043.00
IUUC-Lch-049706	Latimeria chalumnae	53.91	0.00e+00	1326.00
IUUC-Lpe-051316	Leersia perrieri	90.80	0.00e+00	2224.00
IUUC-Loc-051867	Lepisosteus oculatus	48.83	0.00e+00	796.00
IUUC-Lma-053138	Leptosphaeria maculans	54.65	0.00e+00	984.00
IUUC-Laf-053510	Loxodonta africana	53.99	0.00e+00	1354.00
IUUC-Mcc-055836	Macaca mulatta	54.02	0.00e+00	1329.00
IUUC-Mor-057172	Magnaporthe oryzae	46.07	0.00e+00	1086.00
IUUC-Mpo-057300	Magnaporthe poae	53.14	0.00e+00	960.00
IUUC-Mtr-058248	Medicago truncatula	75.82	0.00e+00	1945.00
IUUC-Mla-059019	Melampsora laricipopulina	49.31	0.00e+00	1194.00
IUUC-Mga-059499	Meleagris gallopavo	53.88	0.00e+00	1335.00
IUUC-Mvi-060336	Microbotryum violaceum	50.32	0.00e+00	1197.00
IUUC-Mmr-061102	Microcebus murinus	53.77	0.00e+00	1320.00
IUUC-Mdo-062594	Monodelphis domestica	54.33	0.00e+00	1358.00
IUUC-Mmu-063736	Mus musculus	53.93	0.00e+00	1324.00
IUUC-Mac-065398	Musa acuminata	75.27	0.00e+00	1909.00
IUUC-Mpu-066701	Mustela putorius furo	54.13	0.00e+00	1340.00
IUUC-Mlu-067392	Myotis lucifugus	54.21	0.00e+00	1330.00
IUUC-Nfi-068270	Neosartorya fischeri	54.46	0.00e+00	953.00
IUUC-Ncr-068892	Neurospora crassa	54.92	0.00e+00	967.00
IUUC-Ont-072488	Oreochromis niloticus	52.98	0.00e+00	1307.00
IUUC-Ocu-074211	Oryctolagus cuniculus	54.32	0.00e+00	1334.00
IUUC-Oba-075761	Oryza barthii	90.55	0.00e+00	2226.00
IUUC-Obr-076429	Oryza brachyantha	89.99	0.00e+00	2229.00
IUUC-Ogl-077364	Oryza glaberrima	90.48	0.00e+00	2229.00
IUUC-Ogu-078257	Oryza glumaepatula	90.09	0.00e+00	2164.00
IUUC-Oin-079274	Oryza indica	90.31	0.00e+00	2225.00
IUUC-Olo-080466	Oryza longistaminata	93.27	0.00e+00	1619.00
IUUC-Oni-082874	Oryza nivara	90.39	0.00e+00	2225.00
IUUC-Opu-083885	Oryza punctata	90.97	0.00e+00	2244.00
IUUC-Oru-084274	Oryza rufipogon	90.39	0.00e+00	2227.00
IUUC-Osa-085565	Oryza sativa	90.39	0.00e+00	2227.00
IUUC-Ola-086921	Oryzias latipes	52.27	0.00e+00	1288.00
IUUC-Olu-087639	Ostreococcus lucimarinus	60.16	0.00e+00	1509.00
IUUC-Oga-087991	Otolemur garnettii	51.74	0.00e+00	1246.00
IUUC-Oar-089590	Ovis aries	54.32	0.00e+00	1338.00
IUUC-Ptr-090808	Pan troglodytes	54.09	0.00e+00	1336.00
IUUC-Pan-092475	Papio anubis	54.20	0.00e+00	1336.00
IUUC-Psi-093044	Pelodiscus sinensis	53.65	0.00e+00	876.00
IUUC-Pno-094839	Phaeosphaeria nodorum	45.15	0.00e+00	1026.00
IUUC-Ppa-095390	Physcomitrella patens	67.81	0.00e+00	1717.00
IUUC-Pfo-097493	Poecilia formosa	53.40	0.00e+00	1305.00
IUUC-Pab-098497	Pongo abelii	54.41	0.00e+00	1345.00
IUUC-Pop-099992	Populus trichocarpa	77.69	0.00e+00	1937.00
IUUC-Ppe-101392	Prunus persica	79.00	0.00e+00	2008.00
IUUC-Pva-102126	Pteropus vampyrus	51.85	0.00e+00	1261.00
IUUC-Pgr-103376	Puccinia graminis	49.80	0.00e+00	1200.00
IUUC-Pte-104126	Pyrenophora teres	53.83	0.00e+00	930.00
IUUC-Rno-105428	Rattus norvegicus	54.24	0.00e+00	1331.00
IUUC-Sce-106464	Saccharomyces cerevisiae	41.39	0.00e+00	923.00
IUUC-Sha-107301	Sarcophilus harrisii	53.32	0.00e+00	1318.00
IUUC-Sja-107961	Schizosaccharomyces japonicus	44.24	0.00e+00	1042.00
IUUC-Spo-108217	Schizosaccharomyces pombe	43.91	0.00e+00	1033.00
IUUC-Ssl-108643	Sclerotinia sclerotiorum	46.61	0.00e+00	1106.00
IUUC-Smo-109582	Selaginella moellendorffii	72.43	0.00e+00	1337.00
IUUC-Sit-109697	Setaria italica	93.77	0.00e+00	2305.00
IUUC-Sly-111759	Solanum lycopersicum	77.93	0.00e+00	1984.00
IUUC-Stu-112564	Solanum tuberosum	77.93	0.00e+00	1980.00
IUUC-Sbi-114388	Sorghum bicolor	93.67	0.00e+00	2298.00
IUUC-Sre-115209	Sporisorium reilianum	55.20	0.00e+00	991.00
IUUC-Ssc-115933	Sus scrofa	54.32	0.00e+00	1337.00
IUUC-Tgu-117109	Taeniopygia guttata	42.86	1.00e-102	366.00
IUUC-Tru-117772	Takifugu rubripes	53.16	0.00e+00	1287.00
IUUC-Tsy-119105	Tarsius syrichta	51.39	0.00e+00	1008.00
IUUC-Tni-120556	Tetraodon nigroviridis	41.04	0.00e+00	862.00
IUUC-Tca-121545	Theobroma cacao	82.89	0.00e+00	1492.00
IUUC-Tre-121951	Trichoderma reesei	54.38	0.00e+00	964.00
IUUC-Tvi-122359	Trichoderma virens	54.56	0.00e+00	968.00
IUUC-Tae-125527	Triticum aestivum	89.32	0.00e+00	2223.00
IUUC-Tur-126754	Triticum urartu	87.84	0.00e+00	2180.00
IUUC-Tme-127170	Tuber melanosporum	47.28	0.00e+00	1152.00
IUUC-Ttr-128217	Tursiops truncatus	52.17	0.00e+00	1264.00
IUUC-Uma-129337	Ustilago maydis	55.00	0.00e+00	989.00
IUUC-Vda-129828	Verticillium dahliae	46.87	0.00e+00	1097.00
IUUC-Vpa-130537	Vicugna pacos	53.77	0.00e+00	1310.00
IUUC-Vvi-130958	Vitis vinifera	77.85	0.00e+00	1966.00
IUUC-Xtr-132857	Xenopus tropicalis	51.79	0.00e+00	1250.00
IUUC-Xma-133138	Xiphophorus maculatus	53.40	0.00e+00	1306.00
IUUC-Yli-134399	Yarrowia lipolytica	49.36	0.00e+00	834.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence