iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Gma-042800

UUCD1 version

UUC-GlM-02974

Ensembl Protein ID

GLYMA13G39431.1

UniProt Accession

K7M317; K7M317_SOYBN

Genbank Protein ID

KRH22694.1; KRH22695.1

Protein Name

Protein HIRA

Genbank Nucleotide ID

CM000846; CM000846

Gene Name

LOC100802265; GLYMA_13G317500

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
GLYMA13G39431	GLYMA13G39431.1	GLYMA13G39431.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.50e-21	75.7	123	160
UBD/Beta-Prp	5.90e-41	142.2	11	207

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
           gHt++v +l++ +d   l+sGs D+ti+vW+++ g ++
   Q: 123  GHTADVVDLNWsPDdSALASGSLDNTIHVWNMSNGICT 160
           8***********77699**************9998886 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkfspdksllatgsrdgtikvwdvttgkl...........lrslsgheaevtavkfspdgkilvtgseDrtikvw........... 79
           h+  +i ++++ p++  +atg+ d+++++w++++ ++           l++l +h + v++v++ ++g + ++gs+D++i +            
   Q: 11   HEGMQIFSIDVQPGGLRFATGGGDHKVRIWNMKSVSTdlenddssqrlLATLRDHFGSVNCVRWAKHGRYVASGSDDQVILIHerkpgsgttef 104
           56667788999***********************999**********************************************99988888888 PP
   S: 80   ......dlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlk 167
                 d+++ k  +tl+gh+++v++l++sp+++ l+sGs d+ti+vw++++g c   +l+gh+++v +v+++p g+ ++s s+D+tv +W+ +
   Q: 105  gsgeppDIENWKVAMTLRGHTADVVDLNWSPDDSALASGSLDNTIHVWNMSNGICTA-VLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTS 197
           888888888***********************************************9.*********************************997 PP
   S: 168  tgkllrtltg 177
             +l ++  g
   Q: 198  DWSLAHRTDG 207
           7777777655 PP

Organism

Glycine max

Functional Description
(View)

Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle.

Protein Sequence
(Fasta)

MIAEKPSWVR HEGMQIFSID VQPGGLRFAT GGGDHKVRIW NMKSVSTDLE NDDSSQRLLA 60
TLRDHFGSVN CVRWAKHGRY VASGSDDQVI LIHERKPGSG TTEFGSGEPP DIENWKVAMT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCCACCATAC CCATCTTTTT TTCAATCTCT GTTATGTTAT TACTTCTTCT TTTTATTATT 60
ATTAGAATAT TACTAGTATT TATTATTATT TATTTTCTAG TCATTGGTGT TTTAGCTAGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0156--Chromatin regulator
KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0678--Repressor
KW-0804--Transcription
KW-0805--Transcription regulation
KW-0853--WD repeat

Interpro

IPR031120--HIR1
IPR011494--Hira
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF07569--Hira
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0000790--C:nuclear chromatin
GO:0031491--F:nucleosome binding
GO:0003714--F:transcription corepressor activity
GO:0016569--P:covalent chromatin modification
GO:0006336--P:DNA replication-independent nucleosome assembly
GO:0031935--P:regulation of chromatin silencing
GO:0006351--P:transcription, DNA-templated

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Apl-003197	Anas platyrhynchos	35.27	4.00e-80	293.00
IUUC-Ath-007627	Arabidopsis thaliana	66.67	0.00e+00	1366.00
IUUC-Ago-007766	Ashbya gossypii	33.10	9.00e-60	225.00
IUUC-Acl-008104	Aspergillus clavatus	31.26	2.00e-69	257.00
IUUC-Afu-008781	Aspergillus fumigatus	31.14	5.00e-63	236.00
IUUC-Ate-010530	Aspergillus terreus	27.84	4.00e-54	206.00
IUUC-Bgr-012237	Blumeria graminis	34.45	4.00e-64	239.00
IUUC-Cne-026891	Cryptococcus neoformans	39.47	6.00e-80	292.00
IUUC-Cme-027349	Cyanidioschyzon merolae	29.09	6.00e-54	206.00
IUUC-Fal-036817	Ficedula albicollis	35.44	8.00e-79	288.00
IUUC-Ggr-040016	Gaeumannomyces graminis	35.05	1.00e-66	248.00
IUUC-Lma-053237	Leptosphaeria maculans	33.01	4.00e-64	239.00
IUUC-Nfi-068396	Neosartorya fischeri	30.77	3.00e-62	233.00
IUUC-Pno-094985	Phaeosphaeria nodorum	30.30	5.00e-57	216.00
IUUC-Pop-099587	Populus trichocarpa	77.64	0.00e+00	1600.00
IUUC-Pca-100558	Procavia capensis	47.15	1.00e-47	184.00
IUUC-Tgu-116645	Taeniopygia guttata	35.44	3.00e-79	290.00
IUUC-Tme-127202	Tuber melanosporum	31.53	6.00e-49	189.00
IUUC-Vda-129844	Verticillium dahliae	33.18	4.00e-66	246.00
IUUC-Yli-134424	Yarrowia lipolytica	34.59	1.00e-63	238.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence