iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Cre-022602

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Predicted protein

Genbank Nucleotide ID

DS496155

Gene Name

CHLREDRAFT_132215

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
CHLREDRAFT_132215	EDO98561	EDO98561

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.20e-31	107.0	225	264
UBD/Beta-Prp	4.20e-48	163.6	12	299

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllks 38
           gH+++v ++a  ++   ++sG+ D  +kvWD+ t +++++
   Q: 225  GHESWVLSVAAhPGgAAFASGGSDARVKVWDMATRTCTQT 264
           8********98877677*****************999986 PP

UBD/Beta-Prp

   S: 7    ghhksvitcvkfspdksllatgsrdgtikvwdvttgkl..lrslsgheaevtavkfspdgkilvtgseDrtikvwdls.tgkcvhtlkghedsvlslsfsp 104
           +h+++v+t v ++p+++ l+tgs d+++k wdvt+  l    +++g+  +v +v  + +g++ ++++ D +i+vwd++     +++++    + ++++f p
   Q: 12   AHDEGVWT-VSWIPGTQSLFTGSVDESVKRWDVTDHGLteAYKVEGQGLGVISVAAHGSGQFAASSALDSLIRVWDVNdHLNNISVIEMAPTETWTVAFGP 111
           57888999.999*************************9444455888889***************************9556788888999*********** PP
   S: 105  ...sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldg 202
              + d  vsG+  +t+ +   + +++      +++++v +++++pdg  l++G+ D+ v +Wdl+++kll +  g h+++v+sl+f+ +++ l+++ +d 
   Q: 112  qmeYIDLAVSGGTRNTVAIMPGRRRSKAG----KREQFVLSAAYSPDGTKLAAGCMDGSVAVWDLASQKLLGRCGG-HHKPVRSLTFTADSRMLLTACDDM 207
           88777999***********9888888886....9999*************************************88.************************ PP
   S: 203  tvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhn.ssvisvavlsfgdnvlvlgsedskvniwkl 294
            v l+d+ ++  ++++ gh+++v+sv+++p +  ++sg+sD  +++Wd+ ++++++t++  + ++v+ va+ s ++++l+++++d+++ ++++
   Q: 208  HVHLYDVDNTALIEAFSGHESWVLSVAAHPGGAAFASGGSDARVKVWDMATRTCTQTMAADHtDQVWGVAF-SSTGSHLASVGDDKRLVVYAV 299
           **********************************************************99888********.999***************986 PP

Organism

Chlamydomonas reinhardtii

Protein Sequence
(Fasta)

MTRLTKQYDT IAHDEGVWTV SWIPGTQSLF TGSVDESVKR WDVTDHGLTE AYKVEGQGLG 60
VISVAAHGSG QFAASSALDS LIRVWDVNDH LNNISVIEMA PTETWTVAFG PQMEYIDLAV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCGCTCTGCG CAGCGGGAGA AACAGTTAGC CCGCGCCAAA ATCCTTTCTT TCAACTGAAC 60
CGCATTCGGC ACGCTGAAAC CGCCATGACA CGTCTAACAA AGCAATACGA TACGATAGCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0016593--C:Cdc73/Paf1 complex
GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0005829--C:cytosol
GO:0010452--P:histone H3-K36 methylation
GO:0051568--P:histone H3-K4 methylation
GO:0009910--P:negative regulation of flower development
GO:0016441--P:posttranscriptional gene silencing

KEGG

cre:CHLREDRAFT_132215

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000774	Aegilops tauschii	38.87	6.00e-51	192.00
IUUC-Aml-002245	Ailuropoda melanoleuca	41.91	2.00e-59	220.00
IUUC-Atr-003142	Amborella trichopoda	50.31	2.00e-41	159.00
IUUC-Apl-003179	Anas platyrhynchos	41.25	4.00e-60	222.00
IUUC-Aca-004880	Anolis carolinensis	41.91	3.00e-66	243.00
IUUC-Aly-005956	Arabidopsis lyrata	41.21	2.00e-59	220.00
IUUC-Ath-007230	Arabidopsis thaliana	41.21	5.00e-52	196.00
IUUC-Ame-011511	Astyanax mexicanus	41.78	8.00e-60	221.00
IUUC-Bta-012936	Bos taurus	41.58	3.00e-59	219.00
IUUC-Bdi-015020	Brachypodium distachyon	41.98	1.00e-49	187.00
IUUC-Bol-016345	Brassica oleracea	41.85	3.00e-60	223.00
IUUC-Bra-017323	Brassica rapa	41.85	5.00e-60	222.00
IUUC-Cja-019961	Callithrix jacchus	41.58	7.00e-59	218.00
IUUC-Cfa-020862	Canis familiaris	42.24	1.00e-59	221.00
IUUC-Cpo-021356	Cavia porcellus	42.76	2.00e-59	220.00
IUUC-Csa-024067	Chlorocebus sabaeus	41.91	4.00e-59	219.00
IUUC-Cho-024421	Choloepus hoffmanni	37.44	6.00e-29	118.00
IUUC-Cin-025261	Ciona intestinalis	40.92	3.00e-60	223.00
IUUC-Cne-026846	Cryptococcus neoformans	33.15	9.00e-22	95.90
IUUC-Dre-027706	Danio rerio	33.10	6.00e-41	159.00
IUUC-Dno-029084	Dasypus novemcinctus	41.31	1.00e-57	214.00
IUUC-Dor-030353	Dipodomys ordii	36.36	1.00e-45	174.00
IUUC-Dse-031348	Dothistroma septosporum	24.23	1.00e-17	82.00
IUUC-Dme-031836	Drosophila melanogaster	40.59	3.00e-54	203.00
IUUC-Ete-032261	Echinops telfairi	41.25	1.00e-56	211.00
IUUC-Eca-034231	Equus caballus	37.95	2.00e-51	193.00
IUUC-Eeu-034828	Erinaceus europaeus	41.52	7.00e-55	205.00
IUUC-Fca-036569	Felis catus	41.58	4.00e-59	219.00
IUUC-Fal-037469	Ficedula albicollis	41.91	8.00e-62	228.00
IUUC-Gmo-039579	Gadus morhua	42.76	1.00e-60	224.00
IUUC-Gga-040808	Gallus gallus	41.20	4.00e-62	229.00
IUUC-Gac-042100	Gasterosteus aculeatus	41.58	7.00e-61	225.00
IUUC-Gma-043509	Glycine max	43.45	6.00e-62	229.00
IUUC-Ggo-045227	Gorilla gorilla	41.58	7.00e-59	218.00
IUUC-Hsa-045839	Homo sapiens	41.58	7.00e-59	218.00
IUUC-Hvu-047591	Hordeum vulgare	40.71	2.00e-52	197.00
IUUC-Itr-048741	Ictidomys tridecemlineatus	41.58	4.00e-59	219.00
IUUC-Lch-049549	Latimeria chalumnae	39.66	1.00e-56	211.00
IUUC-Lpe-050746	Leersia perrieri	41.85	3.00e-50	190.00
IUUC-Loc-052540	Lepisosteus oculatus	41.03	1.00e-55	208.00
IUUC-Lma-052992	Leptosphaeria maculans	27.21	2.00e-21	94.40
IUUC-Laf-053907	Loxodonta africana	41.58	4.00e-59	219.00
IUUC-Mcc-055828	Macaca mulatta	39.01	4.00e-55	206.00
IUUC-Meu-056075	Macropus eugenii	42.80	6.00e-53	198.00
IUUC-Mtr-057728	Medicago truncatula	42.49	2.00e-55	207.00
IUUC-Mga-059872	Meleagris gallopavo	41.25	4.00e-61	226.00
IUUC-Mvi-060564	Microbotryum violaceum	24.07	7.00e-18	82.80
IUUC-Mmr-060985	Microcebus murinus	42.00	8.00e-59	218.00
IUUC-Mdo-062758	Monodelphis domestica	41.72	9.00e-60	221.00
IUUC-Mmu-063580	Mus musculus	41.58	1.00e-58	218.00
IUUC-Mac-064880	Musa acuminata	46.33	1.00e-67	248.00
IUUC-Mpu-066577	Mustela putorius furo	42.30	4.00e-59	219.00
IUUC-Nle-069573	Nomascus leucogenys	41.58	7.00e-59	218.00
IUUC-Opr-070216	Ochotona princeps	43.10	2.00e-59	220.00
IUUC-Ont-071981	Oreochromis niloticus	43.10	3.00e-61	226.00
IUUC-Oan-073223	Ornithorhynchus anatinus	39.80	5.00e-40	155.00
IUUC-Ocu-074199	Oryctolagus cuniculus	36.96	1.00e-48	184.00
IUUC-Oba-075255	Oryza barthii	43.46	4.00e-43	166.00
IUUC-Obr-076168	Oryza brachyantha	49.42	1.00e-40	158.00
IUUC-Ogl-077777	Oryza glaberrima	41.35	5.00e-51	192.00
IUUC-Ogu-078780	Oryza glumaepatula	41.35	5.00e-51	192.00
IUUC-Oin-079228	Oryza indica	41.35	1.00e-53	201.00
IUUC-Olo-080617	Oryza longistaminata	48.59	1.00e-33	133.00
IUUC-Ome-081421	Oryza meridionalis	41.35	4.00e-51	192.00
IUUC-Oni-082997	Oryza nivara	41.35	1.00e-53	201.00
IUUC-Opu-083931	Oryza punctata	41.67	1.00e-51	194.00
IUUC-Oru-084645	Oryza rufipogon	41.35	5.00e-51	192.00
IUUC-Osa-085842	Oryza sativa	41.35	1.00e-53	201.00
IUUC-Ola-086696	Oryzias latipes	42.07	5.00e-58	216.00
IUUC-Olu-087643	Ostreococcus lucimarinus	43.06	8.00e-45	171.00
IUUC-Oga-088272	Otolemur garnettii	41.58	5.00e-59	219.00
IUUC-Oar-089416	Ovis aries	41.58	3.00e-59	219.00
IUUC-Ptr-090944	Pan troglodytes	41.58	7.00e-59	218.00
IUUC-Pan-091861	Papio anubis	41.58	7.00e-59	218.00
IUUC-Psi-093750	Pelodiscus sinensis	41.78	5.00e-62	229.00
IUUC-Pma-094608	Petromyzon marinus	42.03	4.00e-55	206.00
IUUC-Pno-094832	Phaeosphaeria nodorum	31.74	2.00e-17	80.90
IUUC-Ppa-095737	Physcomitrella patens	43.49	1.00e-62	231.00
IUUC-Pfo-096479	Poecilia formosa	42.76	2.00e-58	217.00
IUUC-Pab-098179	Pongo abelii	41.58	7.00e-59	218.00
IUUC-Pop-099532	Populus trichocarpa	45.14	9.00e-63	231.00
IUUC-Pca-100664	Procavia capensis	36.40	4.00e-30	122.00
IUUC-Ppe-102056	Prunus persica	44.98	2.00e-64	237.00
IUUC-Pva-102859	Pteropus vampyrus	41.67	3.00e-58	216.00
IUUC-Pte-104236	Pyrenophora teres	27.08	1.00e-17	81.60
IUUC-Rno-105826	Rattus norvegicus	41.25	5.00e-58	216.00
IUUC-Sha-106660	Sarcophilus harrisii	41.72	1.00e-56	211.00
IUUC-Smo-109382	Selaginella moellendorffii	44.01	2.00e-58	217.00
IUUC-Sit-110048	Setaria italica	42.91	3.00e-44	170.00
IUUC-Sly-111618	Solanum lycopersicum	40.32	6.00e-58	215.00
IUUC-Stu-112543	Solanum tuberosum	40.32	5.00e-59	219.00
IUUC-Sar-113743	Sorex araneus	38.18	6.00e-40	155.00
IUUC-Sbi-114309	Sorghum bicolor	43.28	5.00e-45	172.00
IUUC-Ssc-115560	Sus scrofa	39.27	1.00e-53	201.00
IUUC-Tgu-117300	Taeniopygia guttata	41.58	2.00e-61	226.00
IUUC-Tru-117933	Takifugu rubripes	40.92	2.00e-60	223.00
IUUC-Tsy-119574	Tarsius syrichta	35.31	1.00e-41	161.00
IUUC-Tni-120191	Tetraodon nigroviridis	42.36	8.00e-47	178.00
IUUC-Tca-120983	Theobroma cacao	45.63	3.00e-63	233.00
IUUC-Tae-124056	Triticum aestivum	41.67	4.00e-53	199.00
IUUC-Tur-126711	Triticum urartu	40.26	2.00e-50	191.00
IUUC-Tme-127066	Tuber melanosporum	29.09	2.00e-24	105.00
IUUC-Tbe-127802	Tupaia belangeri	41.58	4.00e-59	219.00
IUUC-Ttr-128861	Tursiops truncatus	48.25	2.00e-18	84.30
IUUC-Vpa-130618	Vicugna pacos	39.83	1.00e-47	180.00
IUUC-Vvi-130981	Vitis vinifera	42.81	5.00e-61	226.00
IUUC-Xtr-132460	Xenopus tropicalis	40.26	1.00e-56	211.00
IUUC-Xma-134154	Xiphophorus maculatus	42.76	7.00e-58	215.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence