iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Vvi-131402

UUCD1 version

UUC-ViV-00727

Ensembl Protein ID

VIT_08s0007g04690.t01

UniProt Accession

F6HKD2; F6HKD2_VITVI

Genbank Protein ID

CCB55354.1

Protein Name

Putative uncharacterized protein

Genbank Nucleotide ID

FN595991

Gene Name

VIT_08s0007g04690

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
VIT_08s0007g04690	VIT_08s0007g04690.t01	VIT_08s0007g04690.t01

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.00e-47	156.1	146	184
UBD/Beta-Prp	6.70e-97	324.8	41	234

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlrtgvllk 37
           gH d vt+l f  s++ lvs+s D+ ++vWDl t+++ +
   Q: 146  GHRDQVTDLVFldSGKKLVSSSKDKFLRVWDLETQHCMQ 184
           8**********95559*******************9986 PP

UBD/Beta-Prp

   S: 76   ikvwdlstgkcvhtlk......ghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGsl 157
           + vw +++g c+ tl+      g ++ v+s+++s+ ++ ++sG +d  ir+wd ++g+c+  tl+gh+g+v+ +++++ g+ll+sGs+
   Q: 41   VGVWHVRQGVCTKTLTpspssrGSSFAVTSIASSQ-SSLIASGYADGSIRIWDCDKGTCVT-TLNGHKGAVTALRYNKIGSLLASGSK 126
           45888888888888888888888888888888888.8888888888888888888888888.88888888888888888888888888 PP
   S: 158  DrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgs 245
           D+ v lWd+  ++ l +l+g h d+v+ l f ++gk lvs s+d+ +++wdl+t++c++++ gh + ++s++++p++ +lv+gs+D+ 
   Q: 127  DNDVILWDVVGETGLFRLRG-HRDQVTDLVFLDSGKKLVSSSKDKFLRVWDLETQHCMQIVSGHHTEIWSIDTDPEERYLVTGSADPE 213
           88888888888888888888.8888888888888888888888888888888888888888888888888888888888888888888 PP
   S: 246  iriW....dlrsgdllktlql 262
           +r++    dl +   +++l++
   Q: 214  LRFYtikhDLVNERSISKLNG 234
           888855555555555555555 PP

Organism

Vitis vinifera

Protein Sequence
(Fasta)

MVKAYLRYEP AAAFGVIASV DSNIAYDSSG KHLLAPALEK VGVWHVRQGV CTKTLTPSPS 60
SRGSSFAVTS IASSQSSLIA SGYADGSIRI WDCDKGTCVT TLNGHKGAVT ALRYNKIGSL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTGCAGCGAA CAATGGTGAA AGCATATCTC CGATACGAGC CGGCGGCGGC GTTCGGAGTT 60
ATCGCGTCCG TCGATTCCAA TATCGCCTAC GATAGCTCCG GAAAACACCT CCTTGCACCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR011047--Quinoprotein_ADH-like_supfam
IPR007148--SSU_processome_Utp12
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04003--Utp12
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0034388--C:Pwp2p-containing subcomplex of 90S preribosome
GO:0032040--C:small-subunit processome
GO:0030515--F:snoRNA binding
GO:0000462--P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

vvi:100250257

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000784	Aegilops tauschii	59.68	0.00e+00	969.00
IUUC-Aml-001245	Ailuropoda melanoleuca	37.00	3.00e-175	608.00
IUUC-Atr-002700	Amborella trichopoda	63.55	0.00e+00	1131.00
IUUC-Apl-004164	Anas platyrhynchos	41.59	2.00e-143	501.00
IUUC-Aca-004765	Anolis carolinensis	43.59	5.00e-123	434.00
IUUC-Aly-006503	Arabidopsis lyrata	71.49	0.00e+00	1263.00
IUUC-Ath-006848	Arabidopsis thaliana	71.46	0.00e+00	1271.00
IUUC-Ago-007909	Ashbya gossypii	32.68	7.00e-141	493.00
IUUC-Acl-008238	Aspergillus clavatus	37.42	5.00e-162	564.00
IUUC-Afl-008544	Aspergillus flavus	37.51	2.00e-158	552.00
IUUC-Afu-008868	Aspergillus fumigatus	37.38	3.00e-159	555.00
IUUC-Ani-009367	Aspergillus nidulans	36.83	1.00e-156	546.00
IUUC-Ang-009732	Aspergillus niger	37.61	1.00e-162	566.00
IUUC-Aor-010140	Aspergillus oryzae	37.86	3.00e-161	561.00
IUUC-Ate-010572	Aspergillus terreus	37.86	1.00e-159	556.00
IUUC-Ame-010956	Astyanax mexicanus	44.81	9.00e-122	430.00
IUUC-Bgr-012296	Blumeria graminis	36.05	2.00e-157	548.00
IUUC-Bta-012716	Bos taurus	37.69	0.00e+00	639.00
IUUC-Bci-013699	Botrytis cinerea	36.37	4.00e-156	544.00
IUUC-Bdi-014525	Brachypodium distachyon	61.66	0.00e+00	1077.00
IUUC-Bol-015117	Brassica oleracea	70.47	0.00e+00	1239.00
IUUC-Bra-016869	Brassica rapa	70.43	0.00e+00	1231.00
IUUC-Cel-018570	Caenorhabditis elegans	28.35	2.00e-89	323.00
IUUC-Cja-019425	Callithrix jacchus	38.65	2.00e-179	621.00
IUUC-Cfa-020787	Canis familiaris	37.67	2.00e-177	615.00
IUUC-Cpo-021729	Cavia porcellus	37.94	4.00e-132	464.00
IUUC-Cre-022678	Chlamydomonas reinhardtii	53.03	1.00e-122	433.00
IUUC-Csa-024098	Chlorocebus sabaeus	38.22	0.00e+00	627.00
IUUC-Cho-024495	Choloepus hoffmanni	34.22	8.00e-94	337.00
IUUC-Cin-025245	Ciona intestinalis	34.42	5.00e-104	370.00
IUUC-Cgl-026708	Colletotrichum gloeosporioides	43.36	2.00e-112	399.00
IUUC-Cne-026835	Cryptococcus neoformans	43.21	2.00e-112	399.00
IUUC-Cme-027162	Cyanidioschyzon merolae	27.83	2.00e-47	184.00
IUUC-Dre-027874	Danio rerio	39.47	2.00e-177	615.00
IUUC-Dno-028905	Dasypus novemcinctus	38.32	0.00e+00	630.00
IUUC-Dor-030383	Dipodomys ordii	34.84	2.00e-71	263.00
IUUC-Dse-031297	Dothistroma septosporum	34.91	1.00e-147	516.00
IUUC-Dme-031956	Drosophila melanogaster	34.46	4.00e-132	464.00
IUUC-Ete-032608	Echinops telfairi	35.87	2.00e-98	352.00
IUUC-Eca-034181	Equus caballus	38.10	2.00e-177	615.00
IUUC-Eeu-034495	Erinaceus europaeus	38.75	6.00e-175	607.00
IUUC-Fca-035994	Felis catus	39.09	2.00e-170	592.00
IUUC-Fal-036611	Ficedula albicollis	45.61	4.00e-128	451.00
IUUC-Fox-037807	Fusarium oxysporum	36.85	1.00e-156	546.00
IUUC-Fso-038090	Fusarium solani	42.77	4.00e-113	401.00
IUUC-Gmo-039018	Gadus morhua	34.91	6.00e-85	307.00
IUUC-Ggr-039748	Gaeumannomyces graminis	36.80	4.00e-160	557.00
IUUC-Gga-040707	Gallus gallus	45.22	1.00e-127	449.00
IUUC-Gac-042334	Gasterosteus aculeatus	34.12	1.00e-78	286.00
IUUC-Gma-043860	Glycine max	77.45	0.00e+00	1326.00
IUUC-Ggo-045334	Gorilla gorilla	37.92	3.00e-177	615.00
IUUC-Hsa-046996	Homo sapiens	37.90	7.00e-178	617.00
IUUC-Hvu-047381	Hordeum vulgare	56.85	6.00e-166	576.00
IUUC-Itr-047938	Ictidomys tridecemlineatus	37.57	9.00e-176	610.00
IUUC-Kpa-049185	Komagataella pastoris	33.06	7.00e-149	520.00
IUUC-Lch-050098	Latimeria chalumnae	37.81	3.00e-153	535.00
IUUC-Lpe-050710	Leersia perrieri	62.01	0.00e+00	1087.00
IUUC-Loc-052745	Lepisosteus oculatus	37.90	5.00e-169	587.00
IUUC-Lma-053104	Leptosphaeria maculans	37.27	5.00e-161	561.00
IUUC-Laf-054395	Loxodonta africana	38.31	1.00e-179	622.00
IUUC-Mcc-055077	Macaca mulatta	38.43	1.00e-179	622.00
IUUC-Meu-056418	Macropus eugenii	42.95	5.00e-101	361.00
IUUC-Mor-057031	Magnaporthe oryzae	36.74	1.00e-143	503.00
IUUC-Mpo-057420	Magnaporthe poae	33.30	1.00e-131	463.00
IUUC-Mtr-057838	Medicago truncatula	74.97	0.00e+00	1359.00
IUUC-Mla-058854	Melampsora laricipopulina	34.88	3.00e-141	495.00
IUUC-Mga-060120	Meleagris gallopavo	41.54	1.00e-128	453.00
IUUC-Mvi-060407	Microbotryum violaceum	40.07	3.00e-124	439.00
IUUC-Mmr-060635	Microcebus murinus	38.17	4.00e-179	620.00
IUUC-Mdo-063023	Monodelphis domestica	38.76	0.00e+00	628.00
IUUC-Mmu-064103	Mus musculus	38.18	1.00e-180	625.00
IUUC-Mac-065569	Musa acuminata	68.45	0.00e+00	1240.00
IUUC-Mpu-066462	Mustela putorius furo	37.82	1.00e-177	616.00
IUUC-Mlu-067894	Myotis lucifugus	38.37	9.00e-179	619.00
IUUC-Nfi-068321	Neosartorya fischeri	36.85	5.00e-160	557.00
IUUC-Ncr-068661	Neurospora crassa	42.69	1.00e-115	410.00
IUUC-Nle-069409	Nomascus leucogenys	38.11	7.00e-179	620.00
IUUC-Opr-070445	Ochotona princeps	41.71	2.00e-122	432.00
IUUC-Ont-072339	Oreochromis niloticus	38.34	1.00e-171	596.00
IUUC-Oan-073688	Ornithorhynchus anatinus	38.79	1.00e-172	599.00
IUUC-Ocu-074227	Oryctolagus cuniculus	38.43	0.00e+00	630.00
IUUC-Oba-075635	Oryza barthii	60.98	0.00e+00	1019.00
IUUC-Obr-076897	Oryza brachyantha	62.32	0.00e+00	1100.00
IUUC-Ogl-077555	Oryza glaberrima	60.78	0.00e+00	1017.00
IUUC-Ogu-078724	Oryza glumaepatula	61.41	0.00e+00	1022.00
IUUC-Oin-080030	Oryza indica	61.62	0.00e+00	1019.00
IUUC-Olo-080687	Oryza longistaminata	58.28	0.00e+00	974.00
IUUC-Ome-081867	Oryza meridionalis	61.33	0.00e+00	1017.00
IUUC-Oni-082559	Oryza nivara	61.51	0.00e+00	1015.00
IUUC-Opu-083332	Oryza punctata	58.84	0.00e+00	926.00
IUUC-Oru-084455	Oryza rufipogon	61.72	0.00e+00	1021.00
IUUC-Osa-085793	Oryza sativa	61.72	0.00e+00	1021.00
IUUC-Ola-087395	Oryzias latipes	55.03	2.00e-100	359.00
IUUC-Olu-087768	Ostreococcus lucimarinus	43.43	0.00e+00	666.00
IUUC-Oga-088574	Otolemur garnettii	38.43	1.00e-180	626.00
IUUC-Oar-089453	Ovis aries	37.29	0.00e+00	637.00
IUUC-Ptr-090694	Pan troglodytes	38.00	4.00e-178	617.00
IUUC-Pan-092420	Papio anubis	38.14	8.00e-178	616.00
IUUC-Psi-093683	Pelodiscus sinensis	39.62	0.00e+00	626.00
IUUC-Pma-094197	Petromyzon marinus	39.04	1.00e-38	151.00
IUUC-Pno-094783	Phaeosphaeria nodorum	36.48	3.00e-156	545.00
IUUC-Ppa-095208	Physcomitrella patens	53.38	0.00e+00	904.00
IUUC-Pfo-096299	Poecilia formosa	38.53	1.00e-175	609.00
IUUC-Pab-098706	Pongo abelii	38.26	3.00e-178	617.00
IUUC-Pop-099275	Populus trichocarpa	79.21	0.00e+00	1397.00
IUUC-Pca-100796	Procavia capensis	30.96	8.00e-116	410.00
IUUC-Ppe-101861	Prunus persica	80.13	0.00e+00	1428.00
IUUC-Pva-103241	Pteropus vampyrus	36.81	7.00e-166	577.00
IUUC-Pgr-103432	Puccinia graminis	35.08	6.00e-144	504.00
IUUC-Ptt-103742	Puccinia triticina	38.15	4.00e-127	448.00
IUUC-Pte-104069	Pyrenophora teres	35.72	7.00e-152	530.00
IUUC-Pyt-104650	Pyrenophora triticirepentis	36.97	1.00e-160	559.00
IUUC-Rno-105219	Rattus norvegicus	36.69	3.00e-172	598.00
IUUC-Sce-106271	Saccharomyces cerevisiae	35.02	3.00e-141	495.00
IUUC-Sha-107550	Sarcophilus harrisii	38.58	6.00e-177	613.00
IUUC-Sja-107664	Schizosaccharomyces japonicus	36.38	1.00e-158	553.00
IUUC-Spo-108239	Schizosaccharomyces pombe	35.13	4.00e-162	564.00
IUUC-Ssl-108626	Sclerotinia sclerotiorum	36.69	1.00e-159	556.00
IUUC-Smo-109477	Selaginella moellendorffii	54.87	0.00e+00	927.00
IUUC-Sit-110000	Setaria italica	62.55	0.00e+00	1078.00
IUUC-Sly-111595	Solanum lycopersicum	75.43	0.00e+00	1270.00
IUUC-Stu-112516	Solanum tuberosum	75.05	0.00e+00	1269.00
IUUC-Sar-113195	Sorex araneus	44.30	1.00e-118	419.00
IUUC-Sbi-114465	Sorghum bicolor	61.71	0.00e+00	1048.00
IUUC-Sre-115006	Sporisorium reilianum	39.46	2.00e-103	370.00
IUUC-Ssc-115929	Sus scrofa	42.86	1.00e-121	430.00
IUUC-Tgu-117282	Taeniopygia guttata	44.83	2.00e-124	439.00
IUUC-Tru-118406	Takifugu rubripes	38.50	3.00e-165	575.00
IUUC-Tsy-119170	Tarsius syrichta	37.92	2.00e-176	612.00
IUUC-Tni-119721	Tetraodon nigroviridis	38.13	1.00e-161	563.00
IUUC-Tca-121761	Theobroma cacao	82.77	0.00e+00	1486.00
IUUC-Tre-121908	Trichoderma reesei	42.47	5.00e-118	417.00
IUUC-Tvi-122547	Trichoderma virens	36.78	7.00e-158	550.00
IUUC-Tae-125433	Triticum aestivum	62.07	0.00e+00	1033.00
IUUC-Tur-126811	Triticum urartu	64.05	0.00e+00	1022.00
IUUC-Tme-126987	Tuber melanosporum	38.46	2.00e-165	575.00
IUUC-Tbe-127315	Tupaia belangeri	42.68	1.00e-107	383.00
IUUC-Ttr-129165	Tursiops truncatus	33.62	2.00e-136	479.00
IUUC-Uma-129651	Ustilago maydis	37.99	9.00e-105	374.00
IUUC-Vda-129973	Verticillium dahliae	42.67	3.00e-108	385.00
IUUC-Vpa-130163	Vicugna pacos	39.02	6.00e-54	204.00
IUUC-Xtr-132296	Xenopus tropicalis	43.51	6.00e-128	451.00
IUUC-Xma-133028	Xiphophorus maculatus	38.15	9.00e-174	603.00
IUUC-Yli-134484	Yarrowia lipolytica	36.85	8.00e-151	526.00
IUUC-Zma-135938	Zea mays	60.56	0.00e+00	1050.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence