iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Tvi-122481

Ensembl Protein ID

EHK27241

UniProt Accession

G9MDT2; G9MDT2_HYPVG

Genbank Protein ID

EHK27241.1

Protein Name

Ribosome biogenesis protein YTM1

Genbank Nucleotide ID

ABDF02000001

Gene Name

YTM1; TRIVIDRAFT_73172

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
TRIVIDRAFT_73172	EHK27241	EHK27241

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.80e-28	96.7	162	193

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sdtllvsGsdDgtikvWDlr 31
           gHt +++++++ s t l+s++ D ++ vWD++
   Q: 162  GHTQRINAVRWlSPTQLASAGLDRKVVVWDYK 193
           8**********9449***************76 PP

Organism

Trichoderma virens

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MDASSAQVKV VFTTNEEDLV LPESKRQLLV PADIKRYGLS RILNSESMLD TSSPVPLDFL 60
ANGTFLKTSI EEYLKSNGLS QETTLTLQYV RSLLPPVYEA SFEHDDWVSG VDVLSSTSPA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGTTGCCAGC AACTCGCACC ACAGTGACGA TTCAGCGAGT ACGGTCCTCC TGTCAACTAA 60
AATAACAAGG CCATCTATAT TGCTGATTCG CCAGTATTTA AGCGTATCAA TTAATTCTTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0000790--C:nuclear chromatin
GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0051276--P:chromosome organization
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	26.88	2.00e-35	142.00
IUUC-Aml-001997	Ailuropoda melanoleuca	26.82	2.00e-33	135.00
IUUC-Atr-002544	Amborella trichopoda	24.28	1.00e-29	122.00
IUUC-Apl-003981	Anas platyrhynchos	27.82	1.00e-36	145.00
IUUC-Aca-004370	Anolis carolinensis	26.50	3.00e-39	154.00
IUUC-Aly-006455	Arabidopsis lyrata	27.29	4.00e-37	147.00
IUUC-Ath-006669	Arabidopsis thaliana	27.19	2.00e-32	132.00
IUUC-Ago-007864	Ashbya gossypii	40.29	1.00e-85	308.00
IUUC-Acl-008177	Aspergillus clavatus	50.62	6.00e-127	446.00
IUUC-Afl-008617	Aspergillus flavus	50.21	2.00e-121	427.00
IUUC-Afu-008752	Aspergillus fumigatus	50.00	3.00e-119	420.00
IUUC-Ani-009136	Aspergillus nidulans	49.79	2.00e-125	440.00
IUUC-Ang-009701	Aspergillus niger	48.41	2.00e-113	400.00
IUUC-Aor-009884	Aspergillus oryzae	50.42	7.00e-122	429.00
IUUC-Ate-010472	Aspergillus terreus	50.60	4.00e-76	276.00
IUUC-Ame-011432	Astyanax mexicanus	27.60	5.00e-40	156.00
IUUC-Bgr-012218	Blumeria graminis	56.32	4.00e-141	493.00
IUUC-Bta-012829	Bos taurus	25.86	3.00e-34	137.00
IUUC-Bci-013953	Botrytis cinerea	56.66	9.00e-150	521.00
IUUC-Bdi-014351	Brachypodium distachyon	25.05	7.00e-30	123.00
IUUC-Bol-016514	Brassica oleracea	26.97	4.00e-32	130.00
IUUC-Bra-016988	Brassica rapa	26.97	3.00e-32	130.00
IUUC-Cel-018569	Caenorhabditis elegans	23.31	3.00e-14	71.20
IUUC-Cja-019468	Callithrix jacchus	26.51	3.00e-34	137.00
IUUC-Cfa-020471	Canis familiaris	26.51	2.00e-32	131.00
IUUC-Cpo-022260	Cavia porcellus	26.94	1.00e-34	138.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	32.52	1.00e-38	152.00
IUUC-Csa-023989	Chlorocebus sabaeus	26.29	2.00e-33	134.00
IUUC-Cho-024426	Choloepus hoffmanni	26.84	6.00e-26	110.00
IUUC-Cin-025789	Ciona intestinalis	25.59	2.00e-31	128.00
IUUC-Cgl-026562	Colletotrichum gloeosporioides	67.01	6.00e-60	221.00
IUUC-Cne-027063	Cryptococcus neoformans	25.74	2.00e-24	105.00
IUUC-Dre-027907	Danio rerio	27.62	1.00e-39	155.00
IUUC-Dno-029225	Dasypus novemcinctus	26.08	1.00e-33	135.00
IUUC-Dor-031082	Dipodomys ordii	22.50	2.00e-19	88.60
IUUC-Dse-031308	Dothistroma septosporum	45.59	2.00e-110	390.00
IUUC-Dme-032189	Drosophila melanogaster	25.73	6.00e-32	130.00
IUUC-Ete-032247	Echinops telfairi	24.57	5.00e-27	113.00
IUUC-Eca-034285	Equus caballus	26.29	3.00e-34	137.00
IUUC-Fca-036114	Felis catus	26.29	2.00e-34	138.00
IUUC-Fal-036891	Ficedula albicollis	27.25	7.00e-32	129.00
IUUC-Fox-037965	Fusarium oxysporum	83.08	0.00e+00	789.00
IUUC-Fso-038244	Fusarium solani	84.36	0.00e+00	799.00
IUUC-Gmo-039040	Gadus morhua	27.05	1.00e-41	162.00
IUUC-Ggr-040093	Gaeumannomyces graminis	54.81	3.00e-128	450.00
IUUC-Gga-040610	Gallus gallus	27.34	7.00e-36	143.00
IUUC-Gac-042117	Gasterosteus aculeatus	28.21	2.00e-41	161.00
IUUC-Gma-043756	Glycine max	27.25	1.00e-37	149.00
IUUC-Ggo-045179	Gorilla gorilla	26.29	2.00e-34	138.00
IUUC-Hsa-046114	Homo sapiens	26.29	9.00e-34	135.00
IUUC-Hvu-047331	Hordeum vulgare	24.50	1.00e-26	112.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	26.51	5.00e-35	140.00
IUUC-Kpa-049304	Komagataella pastoris	42.03	4.00e-92	330.00
IUUC-Lch-050655	Latimeria chalumnae	28.06	3.00e-27	114.00
IUUC-Lpe-051675	Leersia perrieri	28.07	1.00e-35	142.00
IUUC-Loc-052868	Lepisosteus oculatus	27.16	3.00e-39	154.00
IUUC-Lma-053258	Leptosphaeria maculans	42.92	3.00e-99	355.00
IUUC-Laf-053993	Loxodonta africana	26.08	2.00e-34	137.00
IUUC-Meu-056501	Macropus eugenii	26.35	8.00e-33	132.00
IUUC-Mor-057114	Magnaporthe oryzae	59.18	1.00e-158	551.00
IUUC-Mpo-057463	Magnaporthe poae	56.12	8.00e-54	201.00
IUUC-Mtr-058367	Medicago truncatula	23.76	7.00e-30	123.00
IUUC-Mla-059107	Melampsora laricipopulina	29.28	1.00e-40	159.00
IUUC-Mga-059745	Meleagris gallopavo	27.34	2.00e-35	141.00
IUUC-Mvi-060362	Microbotryum violaceum	33.50	4.00e-17	81.30
IUUC-Mdo-062257	Monodelphis domestica	25.90	4.00e-35	140.00
IUUC-Mmu-063546	Mus musculus	27.29	6.00e-35	140.00
IUUC-Mac-065540	Musa acuminata	25.71	7.00e-31	126.00
IUUC-Mpu-066284	Mustela putorius furo	25.86	5.00e-34	137.00
IUUC-Mlu-067241	Myotis lucifugus	26.51	4.00e-35	140.00
IUUC-Nfi-068260	Neosartorya fischeri	50.63	6.00e-122	429.00
IUUC-Ncr-068719	Neurospora crassa	61.62	2.00e-156	543.00
IUUC-Nle-068981	Nomascus leucogenys	26.08	9.00e-33	132.00
IUUC-Opr-071218	Ochotona princeps	25.80	4.00e-30	124.00
IUUC-Ont-071646	Oreochromis niloticus	27.56	3.00e-37	147.00
IUUC-Oan-073453	Ornithorhynchus anatinus	26.50	6.00e-41	159.00
IUUC-Ocu-074008	Oryctolagus cuniculus	26.29	4.00e-35	140.00
IUUC-Oba-075712	Oryza barthii	24.74	8.00e-22	96.70
IUUC-Obr-076721	Oryza brachyantha	27.10	4.00e-35	140.00
IUUC-Ogl-077229	Oryza glaberrima	27.50	5.00e-36	143.00
IUUC-Ogu-078977	Oryza glumaepatula	24.74	4.00e-22	97.40
IUUC-Oin-079683	Oryza indica	27.35	4.00e-36	144.00
IUUC-Olo-080291	Oryza longistaminata	26.98	2.00e-19	88.20
IUUC-Ome-081834	Oryza meridionalis	27.04	3.00e-35	141.00
IUUC-Oni-082507	Oryza nivara	26.13	6.00e-32	130.00
IUUC-Opu-083396	Oryza punctata	27.54	8.00e-35	139.00
IUUC-Oru-085220	Oryza rufipogon	26.13	1.00e-31	129.00
IUUC-Osa-085767	Oryza sativa	27.35	4.00e-36	144.00
IUUC-Ola-087420	Oryzias latipes	26.82	8.00e-39	152.00
IUUC-Olu-087740	Ostreococcus lucimarinus	26.43	1.00e-27	115.00
IUUC-Oga-088264	Otolemur garnettii	26.51	3.00e-32	130.00
IUUC-Oar-089335	Ovis aries	25.86	5.00e-34	136.00
IUUC-Ptr-091320	Pan troglodytes	26.29	9.00e-34	135.00
IUUC-Pan-092833	Papio anubis	26.08	1.00e-33	135.00
IUUC-Psi-093504	Pelodiscus sinensis	27.87	5.00e-35	140.00
IUUC-Pma-094189	Petromyzon marinus	26.51	2.00e-37	148.00
IUUC-Pno-094929	Phaeosphaeria nodorum	45.15	1.00e-104	372.00
IUUC-Ppa-095429	Physcomitrella patens	29.75	2.00e-43	167.00
IUUC-Pfo-096337	Poecilia formosa	26.29	2.00e-39	155.00
IUUC-Pab-097571	Pongo abelii	26.29	9.00e-34	135.00
IUUC-Pop-099977	Populus trichocarpa	26.39	2.00e-33	134.00
IUUC-Pca-100394	Procavia capensis	25.23	2.00e-27	115.00
IUUC-Ppe-101848	Prunus persica	26.94	2.00e-36	145.00
IUUC-Pva-102921	Pteropus vampyrus	24.37	3.00e-11	61.20
IUUC-Pgr-103637	Puccinia graminis	29.80	8.00e-47	179.00
IUUC-Ptt-103781	Puccinia triticina	29.80	7.00e-47	179.00
IUUC-Pte-104135	Pyrenophora teres	42.57	5.00e-97	348.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	43.55	1.00e-97	348.00
IUUC-Rno-105114	Rattus norvegicus	27.25	5.00e-35	140.00
IUUC-Sce-106401	Saccharomyces cerevisiae	37.95	2.00e-83	301.00
IUUC-Sha-107122	Sarcophilus harrisii	26.01	3.00e-33	134.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	35.37	2.00e-74	271.00
IUUC-Spo-108134	Schizosaccharomyces pombe	37.60	5.00e-75	273.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	55.81	3.00e-154	536.00
IUUC-Smo-108720	Selaginella moellendorffii	28.16	4.00e-34	137.00
IUUC-Sit-110311	Setaria italica	27.25	2.00e-32	131.00
IUUC-Sly-111178	Solanum lycopersicum	27.48	8.00e-37	146.00
IUUC-Stu-112778	Solanum tuberosum	25.59	6.00e-32	130.00
IUUC-Sbi-114193	Sorghum bicolor	26.04	3.00e-31	127.00
IUUC-Sre-115002	Sporisorium reilianum	25.55	3.00e-25	108.00
IUUC-Ssc-116066	Sus scrofa	26.29	7.00e-35	139.00
IUUC-Tgu-117048	Taeniopygia guttata	27.58	2.00e-36	144.00
IUUC-Tni-119820	Tetraodon nigroviridis	27.56	6.00e-38	149.00
IUUC-Tca-121605	Theobroma cacao	26.80	8.00e-37	146.00
IUUC-Tre-121947	Trichoderma reesei	97.26	0.00e+00	907.00
IUUC-Tae-123504	Triticum aestivum	26.88	2.00e-35	141.00
IUUC-Tur-126586	Triticum urartu	25.61	2.00e-30	124.00
IUUC-Tme-126900	Tuber melanosporum	41.94	3.00e-94	337.00
IUUC-Uma-129628	Ustilago maydis	26.78	3.00e-20	91.70
IUUC-Vpa-130260	Vicugna pacos	26.29	8.00e-35	139.00
IUUC-Vvi-131009	Vitis vinifera	26.20	5.00e-37	147.00
IUUC-Xtr-132083	Xenopus tropicalis	27.52	2.00e-38	151.00
IUUC-Xma-133094	Xiphophorus maculatus	26.71	1.00e-40	159.00
IUUC-Yli-134531	Yarrowia lipolytica	36.55	7.00e-70	256.00
IUUC-Zma-135509	Zea mays	27.02	6.00e-36	143.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence