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Tag Content
iUUCD ID IUUC-Gga-040214
Ensembl Protein ID ENSGALP00000012348.5
UniProt Accession F1NKP2; F1NKP2_CHICK
Genbank Protein ID ENSGALP00000012348
Protein Name LIM domain-binding protein 1
Genbank Nucleotide ID AADN04000053
Gene Name LDB1
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSGALG00000007641.5 ENSGALT00000085289.1 ENSGALP00000061942.1
ENSGALG00000007641.5 ENSGALT00000012362.5 ENSGALP00000012348.5
ENSGALG00000007641.5 ENSGALT00000060112.1 ENSGALP00000053833.1
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
E3 activity/RING/U-box 63.93 1.00e-128 456.00 IUUC-Dme-031667
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Gallus gallus
Protein Sequence
(Fasta)
MSVGCACPGC SSKSFKLYSP KEPPNGNAFP PFHPGTMLDR DVGPTPMYPP TYLEPGIGRH 60
TPYGNQTDYR IFELNKRLQN WTEECDNLWW DAFTTEFFED DAMLTITFCL EDGPKRYTIG 120
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Protein Fasta Sequence



>IUUC-Gga-040214|E3,U-box|Gallus gallus
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Nucleotide Sequence
(Fasta)
GCCGCGGGAG CCGCCCCGGC CTCCACGTGT CACGGCGCGG CCGCCGCCGC CCGCCGCCTA 60
CCTGCAGGGG ACTGCCGGCG CGCAGGGCCG GCTGGCGAGA GGCGCCGCCG CCCGCCGGTC 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Gga-040214|E3,U-box|Gallus gallus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR030167--LDB1
IPR029005--LIM-bd/SEUSS

Gene Ontology

GO:0031252--C:cell leading edge
GO:0000790--C:nuclear chromatin
GO:0005667--C:transcription factor complex
GO:0003682--F:chromatin binding
GO:0001158--F:enhancer sequence-specific DNA binding
GO:0000989--F:transcription factor activity, transcription factor binding
GO:0009948--P:anterior/posterior axis specification
GO:0022607--P:cellular component assembly
GO:0021702--P:cerebellar Purkinje cell differentiation
GO:0010669--P:epithelial structure maintenance
GO:0001702--P:gastrulation with mouth forming second
GO:0043973--P:histone H3-K4 acetylation
GO:0045647--P:negative regulation of erythrocyte differentiation
GO:0045892--P:negative regulation of transcription, DNA-templated
GO:0045785--P:positive regulation of cell adhesion
GO:0046985--P:positive regulation of hemoglobin biosynthetic process
GO:0045944--P:positive regulation of transcription from RNA polymerase II promoter
GO:0030334--P:regulation of cell migration
GO:0032784--P:regulation of DNA-templated transcription, elongation
GO:0051893--P:regulation of focal adhesion assembly
GO:0043549--P:regulation of kinase activity
GO:0035019--P:somatic stem cell population maintenance
GO:0006366--P:transcription from RNA polymerase II promoter
GO:0000972--P:transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0016055--P:Wnt signaling pathway

KEGG gga:395952
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000177 Aegilops tauschii 25.30 2.00e-04 41.20
IUUC-Aml-002031 Ailuropoda melanoleuca 98.54 0.00e+00 762.00
IUUC-Atr-003083 Amborella trichopoda 22.06 5.00e-04 40.00
IUUC-Apl-004210 Anas platyrhynchos 98.47 2.00e-178 617.00
IUUC-Aca-005241 Anolis carolinensis 99.51 0.00e+00 769.00
IUUC-Aly-006204 Arabidopsis lyrata 25.00 2.00e-06 47.80
IUUC-Ath-007339 Arabidopsis thaliana 25.00 2.00e-06 47.80
IUUC-Acl-008255 Aspergillus clavatus 20.18 1.00e-05 45.40
IUUC-Ame-010910 Astyanax mexicanus 95.15 0.00e+00 732.00
IUUC-Bgr-012180 Blumeria graminis 22.17 1.00e-05 45.10
IUUC-Bta-012596 Bos taurus 74.93 1.00e-156 545.00
IUUC-Bci-013927 Botrytis cinerea 24.66 3.00e-06 47.40
IUUC-Bol-015721 Brassica oleracea 25.53 6.00e-07 49.70
IUUC-Bra-017183 Brassica rapa 25.53 5.00e-07 49.70
IUUC-Cel-018189 Caenorhabditis elegans 33.62 1.00e-30 127.00
IUUC-Cja-019586 Callithrix jacchus 76.27 3.00e-158 550.00
IUUC-Cfa-021188 Canis familiaris 98.54 0.00e+00 761.00
IUUC-Cpo-022350 Cavia porcellus 98.01 0.00e+00 735.00
IUUC-Csa-023816 Chlorocebus sabaeus 98.30 0.00e+00 759.00
IUUC-Cho-024958 Choloepus hoffmanni 61.78 3.00e-65 241.00
IUUC-Cin-025721 Ciona intestinalis 51.77 3.00e-88 318.00
IUUC-Csv-026065 Ciona savignyi 52.09 1.00e-92 332.00
IUUC-Dre-027356 Danio rerio 70.97 2.00e-153 535.00
IUUC-Dno-029918 Dasypus novemcinctus 98.95 0.00e+00 743.00
IUUC-Dor-030634 Dipodomys ordii 98.40 0.00e+00 684.00
IUUC-Dse-031245 Dothistroma septosporum 24.00 1.00e-04 41.60
IUUC-Dme-031667 Drosophila melanogaster 63.74 2.00e-126 446.00
IUUC-Ete-032246 Echinops telfairi 73.67 6.00e-153 533.00
IUUC-Eca-034015 Equus caballus 75.42 4.00e-158 550.00
IUUC-Eeu-034902 Erinaceus europaeus 98.40 0.00e+00 684.00
IUUC-Fca-035903 Felis catus 98.02 0.00e+00 738.00
IUUC-Fal-037407 Ficedula albicollis 76.69 3.00e-155 541.00
IUUC-Gmo-039466 Gadus morhua 92.02 0.00e+00 744.00
IUUC-Ggr-040030 Gaeumannomyces graminis 25.93 4.00e-03 37.00
IUUC-Gac-042214 Gasterosteus aculeatus 91.38 0.00e+00 745.00
IUUC-Gma-042794 Glycine max 24.53 6.00e-07 49.70
IUUC-Ggo-044988 Gorilla gorilla 75.42 3.00e-159 553.00
IUUC-Hsa-046092 Homo sapiens 76.12 6.00e-160 556.00
IUUC-Itr-047934 Ictidomys tridecemlineatus 98.54 0.00e+00 761.00
IUUC-Lch-049895 Latimeria chalumnae 81.05 2.00e-97 348.00
IUUC-Lpe-050806 Leersia perrieri 25.35 4.00e-06 47.00
IUUC-Loc-052845 Lepisosteus oculatus 96.84 0.00e+00 763.00
IUUC-Lma-053090 Leptosphaeria maculans 23.62 1.00e-04 41.60
IUUC-Laf-054538 Loxodonta africana 95.37 0.00e+00 632.00
IUUC-Mcc-055116 Macaca mulatta 81.55 2.00e-119 421.00
IUUC-Meu-056777 Macropus eugenii 92.80 0.00e+00 628.00
IUUC-Mpo-057376 Magnaporthe poae 21.47 1.00e-03 38.50
IUUC-Mtr-058142 Medicago truncatula 24.53 6.00e-07 49.70
IUUC-Mga-059716 Meleagris gallopavo 76.12 2.00e-154 538.00
IUUC-Mmr-060649 Microcebus murinus 75.14 1.00e-157 548.00
IUUC-Mdo-062535 Monodelphis domestica 75.70 1.00e-155 542.00
IUUC-Mmu-064036 Mus musculus 75.28 6.00e-160 556.00
IUUC-Mac-065338 Musa acuminata 23.67 1.00e-05 45.40
IUUC-Mpu-065719 Mustela putorius furo 98.54 0.00e+00 761.00
IUUC-Mlu-067219 Myotis lucifugus 96.80 0.00e+00 727.00
IUUC-Ncr-068691 Neurospora crassa 22.08 1.00e-04 41.60
IUUC-Nle-068983 Nomascus leucogenys 76.27 8.00e-159 552.00
IUUC-Opr-070467 Ochotona princeps 98.40 0.00e+00 684.00
IUUC-Ont-071566 Oreochromis niloticus 93.60 0.00e+00 754.00
IUUC-Oan-073368 Ornithorhynchus anatinus 97.87 0.00e+00 677.00
IUUC-Ocu-074854 Oryctolagus cuniculus 75.14 4.00e-159 553.00
IUUC-Ome-081687 Oryza meridionalis 26.32 1.00e-03 38.10
IUUC-Ola-086364 Oryzias latipes 93.61 0.00e+00 751.00
IUUC-Oga-088235 Otolemur garnettii 74.30 1.00e-154 538.00
IUUC-Oar-089547 Ovis aries 98.54 0.00e+00 762.00
IUUC-Ptr-091423 Pan troglodytes 75.70 2.00e-158 551.00
IUUC-Pan-092378 Papio anubis 98.13 0.00e+00 683.00
IUUC-Psi-093638 Pelodiscus sinensis 77.09 2.00e-153 534.00
IUUC-Pma-094384 Petromyzon marinus 66.10 5.00e-52 196.00
IUUC-Pno-095027 Phaeosphaeria nodorum 22.66 2.00e-04 40.80
IUUC-Pfo-096031 Poecilia formosa 91.47 0.00e+00 693.00
IUUC-Pab-097886 Pongo abelii 76.27 8.00e-159 552.00
IUUC-Pop-099430 Populus trichocarpa 24.85 3.00e-06 47.40
IUUC-Pca-101138 Procavia capensis 98.40 0.00e+00 684.00
IUUC-Ppe-101293 Prunus persica 29.67 1.00e-06 48.10
IUUC-Pva-103215 Pteropus vampyrus 75.42 8.00e-159 552.00
IUUC-Pte-104238 Pyrenophora teres 24.41 4.00e-04 39.30
IUUC-Rno-105968 Rattus norvegicus 75.56 4.00e-160 556.00
IUUC-Sha-107595 Sarcophilus harrisii 97.73 0.00e+00 718.00
IUUC-Ssl-108527 Sclerotinia sclerotiorum 23.45 1.00e-05 44.70
IUUC-Smo-109552 Selaginella moellendorffii 19.34 6.00e-04 39.70
IUUC-Sly-110873 Solanum lycopersicum 25.47 3.00e-06 47.00
IUUC-Stu-112586 Solanum tuberosum 20.00 5.00e-03 36.60
IUUC-Sar-113076 Sorex araneus 73.82 9.00e-104 369.00
IUUC-Sre-115143 Sporisorium reilianum 18.93 8.00e-04 38.90
IUUC-Ssc-115755 Sus scrofa 98.93 0.00e+00 689.00
IUUC-Tgu-117326 Taeniopygia guttata 76.40 1.00e-154 538.00
IUUC-Tru-117858 Takifugu rubripes 73.19 9.00e-157 545.00
IUUC-Tsy-119296 Tarsius syrichta 68.99 7.00e-139 486.00
IUUC-Tni-119822 Tetraodon nigroviridis 88.64 0.00e+00 632.00
IUUC-Tca-120935 Theobroma cacao 29.67 8.00e-07 49.30
IUUC-Tbe-127366 Tupaia belangeri 96.80 0.00e+00 659.00
IUUC-Ttr-128484 Tursiops truncatus 75.38 4.00e-147 513.00
IUUC-Vpa-130304 Vicugna pacos 73.21 1.00e-118 419.00
IUUC-Vvi-131560 Vitis vinifera 28.57 3.00e-06 47.40
IUUC-Xtr-132062 Xenopus tropicalis 99.46 0.00e+00 694.00
IUUC-Xma-134288 Xiphophorus maculatus 94.17 0.00e+00 766.00
IUUC-Yli-134374 Yarrowia lipolytica 21.24 1.00e-05 44.70
IUUC-Zma-135310 Zea mays 23.16 2.00e-04 41.20
Created Date 25-Jun-2017

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