iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-114768

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000765

Gene Name

SORBI_006G198600

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb06g027070	Sb06g027070.1	Sb06g027070.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	7.40e-57	187.6	157	196
UBD/Beta-Prp	7.80e-114	380.7	420	677

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf...sd.tllvsGsdDgtikvWDlrtgvll 36
           gHt+ vt + f   +   ll sGs Dgt++vW+l t +++
   Q: 157  GHTGVVTTIMFhkdPKrLLLFSGSEDGTVRVWNLETKKCV 196
           8***********76555668**************999986 PP

UBD/Beta-Prp

   S: 18   fspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgk.ilvtgseDrtikvwdls..........tgkcvhtlkghedsvlslsf 102
              +k+l++tgs+d+t+++wdv++++++   +gh ++v +v fs+++k ++v+gs+Drtikvw  +          + k   ++ +h++++ sl++
   Q: 420  A-SGKTLVVTGSKDNTVRLWDVERKSCIGIGKGHLGAVGSVAFSKKTKnFFVSGSSDRTIKVWTWDdalgdaedevSLKAKAVVAAHDKDINSLAI 514
           3.6899**************************************99888**************5555556666777888888999*********** PP
   S: 103  spsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsg 198
           sp++  + sGs+drt+ +w+l++   +  +l+gh++ +++v+++p +++++++s Drt+++W+++ g++l+t++g ht+sv   sf s g+++vs+
   Q: 515  SPNDGLVCSGSEDRTACIWKLPNLVSSI-VLKGHKRGIWSVEFSPIEQCVMTSSGDRTIKIWSVADGSCLKTFEG-HTSSVLRASFLSRGTQIVSC 608
           ***************************9.*********************************************9.******************** PP
   S: 199  sldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriW.dlrsgdllktlqlhnss 266
           + dg vklw ++t+ec+ t+  h+  v+ +++  ++e +++g+ D ++++W d+++ d    + ++++ 
   Q: 609  GSDGLVKLWTIKTNECIATYDKHDGKVWALAVGMKTEMVATGGTDSVLNLWhDCTKEDKQEDFRKKEEE 677
           ********************************************************9999988887755 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MASTHALKKN YRCDRSLQQF YTGGPFAVGL APGGDGEGEG GAQAEAFLAC ACGGEVRVVS 60
AADASAIGEP VDGDSEAITA LALSPDSRLI FAAGHSRLIR VWDLASRTCI RSWKGHDGPI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GACCCCCCCG CCGTTGCCGC GGCTACCGGA ACCAGTCATG GCTTCGACGC ATGCTCTAAA 60
GAAGAACTAC CGCTGCGACC GCTCCCTGCA GCAGTTCTAC ACTGGCGGGC CCTTTGCGGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR013934--SSU_processome_Utp13
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08625--Utp13
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0034388--C:Pwp2p-containing subcomplex of 90S preribosome
GO:0032040--C:small-subunit processome
GO:0030515--F:snoRNA binding
GO:0051301--P:cell division
GO:0009793--P:embryo development ending in seed dormancy
GO:0009880--P:embryonic pattern specification
GO:0000462--P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

sbi:SORBI_06g027070

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000765	Aegilops tauschii	78.52	0.00e+00	1336.00
IUUC-Aml-002376	Ailuropoda melanoleuca	38.40	3.00e-159	555.00
IUUC-Atr-002486	Amborella trichopoda	61.96	0.00e+00	1078.00
IUUC-Apl-003519	Anas platyrhynchos	38.13	7.00e-145	506.00
IUUC-Aca-004363	Anolis carolinensis	33.89	3.00e-75	274.00
IUUC-Aly-006152	Arabidopsis lyrata	62.01	0.00e+00	1061.00
IUUC-Ath-006966	Arabidopsis thaliana	62.35	0.00e+00	1070.00
IUUC-Ago-007746	Ashbya gossypii	30.16	2.00e-104	372.00
IUUC-Acl-008009	Aspergillus clavatus	29.20	5.00e-105	375.00
IUUC-Afl-008681	Aspergillus flavus	30.12	7.00e-101	361.00
IUUC-Afu-008798	Aspergillus fumigatus	28.76	3.00e-97	348.00
IUUC-Ani-009278	Aspergillus nidulans	29.97	4.00e-112	398.00
IUUC-Ang-009640	Aspergillus niger	31.76	5.00e-112	397.00
IUUC-Aor-010160	Aspergillus oryzae	30.29	2.00e-100	360.00
IUUC-Ate-010320	Aspergillus terreus	29.89	2.00e-107	382.00
IUUC-Ame-010930	Astyanax mexicanus	35.55	4.00e-38	150.00
IUUC-Bgr-012054	Blumeria graminis	30.04	4.00e-104	372.00
IUUC-Bta-012611	Bos taurus	38.63	2.00e-154	538.00
IUUC-Bci-013797	Botrytis cinerea	29.29	2.00e-107	382.00
IUUC-Bdi-014384	Brachypodium distachyon	85.82	0.00e+00	1489.00
IUUC-Bol-016483	Brassica oleracea	59.56	0.00e+00	1053.00
IUUC-Bra-017798	Brassica rapa	60.79	0.00e+00	1036.00
IUUC-Cel-018664	Caenorhabditis elegans	27.88	4.00e-93	335.00
IUUC-Cja-019092	Callithrix jacchus	38.07	3.00e-158	551.00
IUUC-Cfa-021040	Canis familiaris	38.32	2.00e-159	555.00
IUUC-Cpo-022529	Cavia porcellus	38.41	1.00e-153	535.00
IUUC-Cre-022986	Chlamydomonas reinhardtii	57.66	1.00e-49	187.00
IUUC-Csa-024205	Chlorocebus sabaeus	38.31	2.00e-160	558.00
IUUC-Cin-025560	Ciona intestinalis	36.34	3.00e-153	534.00
IUUC-Cgl-026481	Colletotrichum gloeosporioides	29.94	1.00e-116	413.00
IUUC-Cne-027082	Cryptococcus neoformans	30.40	2.00e-115	409.00
IUUC-Cme-027159	Cyanidioschyzon merolae	24.62	2.00e-37	150.00
IUUC-Dre-028138	Danio rerio	36.81	1.00e-157	549.00
IUUC-Dno-029914	Dasypus novemcinctus	35.88	8.00e-107	380.00
IUUC-Dor-030685	Dipodomys ordii	40.52	3.00e-103	369.00
IUUC-Dse-031429	Dothistroma septosporum	28.93	6.00e-110	391.00
IUUC-Dme-031995	Drosophila melanogaster	30.64	3.00e-96	345.00
IUUC-Ete-033086	Echinops telfairi	41.90	2.00e-95	342.00
IUUC-Eca-034354	Equus caballus	37.78	1.00e-150	526.00
IUUC-Eeu-034832	Erinaceus europaeus	40.49	3.00e-92	332.00
IUUC-Fca-036136	Felis catus	34.50	4.00e-133	468.00
IUUC-Fal-036859	Ficedula albicollis	37.33	4.00e-160	557.00
IUUC-Fox-037863	Fusarium oxysporum	30.47	4.00e-105	375.00
IUUC-Fso-038389	Fusarium solani	28.83	3.00e-111	395.00
IUUC-Gmo-038711	Gadus morhua	35.26	2.00e-140	491.00
IUUC-Ggr-039820	Gaeumannomyces graminis	29.30	8.00e-107	380.00
IUUC-Gga-040263	Gallus gallus	37.77	3.00e-162	564.00
IUUC-Gac-041291	Gasterosteus aculeatus	37.12	3.00e-165	574.00
IUUC-Gma-044026	Glycine max	64.19	0.00e+00	1117.00
IUUC-Ggo-044693	Gorilla gorilla	38.19	2.00e-156	545.00
IUUC-Hsa-046048	Homo sapiens	38.07	7.00e-156	543.00
IUUC-Hvu-047608	Hordeum vulgare	84.15	0.00e+00	1469.00
IUUC-Itr-048391	Ictidomys tridecemlineatus	38.39	4.00e-164	571.00
IUUC-Kpa-049209	Komagataella pastoris	31.23	6.00e-116	410.00
IUUC-Lch-050085	Latimeria chalumnae	37.67	2.00e-150	525.00
IUUC-Lpe-050945	Leersia perrieri	82.17	0.00e+00	1397.00
IUUC-Loc-052679	Lepisosteus oculatus	38.66	3.00e-179	621.00
IUUC-Laf-053685	Loxodonta africana	37.56	6.00e-147	513.00
IUUC-Mcc-055861	Macaca mulatta	38.43	8.00e-157	546.00
IUUC-Meu-056820	Macropus eugenii	35.36	3.00e-119	421.00
IUUC-Mor-057234	Magnaporthe oryzae	30.28	2.00e-99	356.00
IUUC-Mpo-057456	Magnaporthe poae	29.48	2.00e-80	292.00
IUUC-Mtr-058122	Medicago truncatula	62.07	0.00e+00	1096.00
IUUC-Mla-058980	Melampsora laricipopulina	30.02	2.00e-86	313.00
IUUC-Mga-060080	Meleagris gallopavo	36.16	6.00e-159	553.00
IUUC-Mvi-060338	Microbotryum violaceum	35.62	8.00e-146	510.00
IUUC-Mmr-060762	Microcebus murinus	37.25	5.00e-154	537.00
IUUC-Mdo-061975	Monodelphis domestica	38.61	6.00e-157	547.00
IUUC-Mmu-064038	Mus musculus	38.07	4.00e-156	544.00
IUUC-Mac-065189	Musa acuminata	67.17	0.00e+00	1189.00
IUUC-Mpu-066526	Mustela putorius furo	38.63	2.00e-152	532.00
IUUC-Mlu-067716	Myotis lucifugus	38.41	5.00e-170	590.00
IUUC-Nfi-068474	Neosartorya fischeri	29.04	1.00e-102	366.00
IUUC-Ncr-068826	Neurospora crassa	28.00	2.00e-99	356.00
IUUC-Nle-069832	Nomascus leucogenys	37.83	2.00e-159	555.00
IUUC-Opr-071183	Ochotona princeps	37.89	2.00e-150	525.00
IUUC-Ont-072371	Oreochromis niloticus	38.75	1.00e-166	579.00
IUUC-Oan-073491	Ornithorhynchus anatinus	36.28	9.00e-129	453.00
IUUC-Ocu-074894	Oryctolagus cuniculus	29.03	2.00e-27	116.00
IUUC-Oba-075963	Oryza barthii	82.62	0.00e+00	1464.00
IUUC-Obr-076173	Oryza brachyantha	85.49	0.00e+00	1438.00
IUUC-Ogl-077692	Oryza glaberrima	84.31	0.00e+00	1457.00
IUUC-Ogu-078965	Oryza glumaepatula	82.62	0.00e+00	1463.00
IUUC-Oin-079708	Oryza indica	82.17	0.00e+00	1456.00
IUUC-Olo-080679	Oryza longistaminata	82.62	0.00e+00	1461.00
IUUC-Oni-082960	Oryza nivara	82.06	0.00e+00	1455.00
IUUC-Opu-083282	Oryza punctata	82.02	0.00e+00	1425.00
IUUC-Oru-085224	Oryza rufipogon	82.40	0.00e+00	1459.00
IUUC-Osa-085320	Oryza sativa	82.40	0.00e+00	1459.00
IUUC-Ola-086370	Oryzias latipes	31.21	9.00e-75	273.00
IUUC-Olu-087814	Ostreococcus lucimarinus	34.95	1.00e-125	443.00
IUUC-Oga-088458	Otolemur garnettii	38.03	1.00e-163	569.00
IUUC-Oar-090032	Ovis aries	36.79	8.00e-116	410.00
IUUC-Ptr-090749	Pan troglodytes	38.05	7.00e-156	543.00
IUUC-Pan-091691	Papio anubis	37.23	4.00e-147	514.00
IUUC-Psi-093200	Pelodiscus sinensis	36.82	1.00e-160	559.00
IUUC-Pma-094165	Petromyzon marinus	36.25	8.00e-113	400.00
IUUC-Pno-095048	Phaeosphaeria nodorum	32.58	1.00e-94	339.00
IUUC-Ppa-095336	Physcomitrella patens	54.26	0.00e+00	882.00
IUUC-Pfo-096132	Poecilia formosa	38.81	4.00e-164	571.00
IUUC-Pab-097855	Pongo abelii	37.93	2.00e-159	555.00
IUUC-Pop-099434	Populus trichocarpa	61.23	0.00e+00	1050.00
IUUC-Pca-100232	Procavia capensis	36.09	1.00e-55	210.00
IUUC-Ppe-101665	Prunus persica	61.48	0.00e+00	1098.00
IUUC-Pva-102178	Pteropus vampyrus	38.02	3.00e-158	551.00
IUUC-Pgr-103288	Puccinia graminis	28.98	2.00e-86	313.00
IUUC-Ptt-103808	Puccinia triticina	30.14	7.00e-82	297.00
IUUC-Pte-104205	Pyrenophora teres	32.18	2.00e-113	402.00
IUUC-Pyt-104658	Pyrenophora triticirepentis	31.09	4.00e-105	375.00
IUUC-Rno-105617	Rattus norvegicus	38.53	2.00e-159	555.00
IUUC-Sce-106281	Saccharomyces cerevisiae	30.80	2.00e-106	379.00
IUUC-Sha-107378	Sarcophilus harrisii	38.43	2.00e-156	545.00
IUUC-Sja-107718	Schizosaccharomyces japonicus	32.13	4.00e-119	421.00
IUUC-Spo-108361	Schizosaccharomyces pombe	32.23	2.00e-122	432.00
IUUC-Ssl-108592	Sclerotinia sclerotiorum	30.04	1.00e-114	406.00
IUUC-Smo-109257	Selaginella moellendorffii	53.36	0.00e+00	880.00
IUUC-Sit-110258	Setaria italica	91.08	0.00e+00	1583.00
IUUC-Sly-111521	Solanum lycopersicum	61.70	0.00e+00	1066.00
IUUC-Stu-112718	Solanum tuberosum	72.26	8.00e-55	204.00
IUUC-Sar-113586	Sorex araneus	42.66	4.00e-24	105.00
IUUC-Sre-115159	Sporisorium reilianum	32.10	2.00e-92	333.00
IUUC-Ssc-116342	Sus scrofa	29.02	6.00e-73	268.00
IUUC-Tgu-117320	Taeniopygia guttata	36.67	2.00e-146	512.00
IUUC-Tru-118024	Takifugu rubripes	38.20	3.00e-164	571.00
IUUC-Tni-119971	Tetraodon nigroviridis	38.57	2.00e-165	575.00
IUUC-Tca-121248	Theobroma cacao	65.53	0.00e+00	1080.00
IUUC-Tre-122079	Trichoderma reesei	28.72	7.00e-109	387.00
IUUC-Tvi-122554	Trichoderma virens	28.07	5.00e-108	384.00
IUUC-Tae-123690	Triticum aestivum	84.86	0.00e+00	1477.00
IUUC-Tur-126436	Triticum urartu	77.79	0.00e+00	1174.00
IUUC-Tme-126942	Tuber melanosporum	33.37	8.00e-120	424.00
IUUC-Tbe-128000	Tupaia belangeri	35.43	7.00e-21	95.10
IUUC-Ttr-128964	Tursiops truncatus	37.16	3.00e-156	544.00
IUUC-Uma-129473	Ustilago maydis	30.67	6.00e-99	355.00
IUUC-Vda-129749	Verticillium dahliae	30.40	6.00e-103	367.00
IUUC-Vvi-131511	Vitis vinifera	65.57	0.00e+00	1102.00
IUUC-Xtr-132816	Xenopus tropicalis	33.37	5.00e-133	468.00
IUUC-Xma-133672	Xiphophorus maculatus	38.74	2.00e-168	585.00
IUUC-Yli-134602	Yarrowia lipolytica	36.10	4.00e-139	488.00
IUUC-Zma-135976	Zea mays	91.23	0.00e+00	1588.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence