iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ptr-091604

Ensembl Protein ID

ENSPTRP00000014129.3

UniProt Accession

H2QBE8; H2QBE8_PANTR

Genbank Protein ID

JAA05556.1; JAA14207.1; JAA25274.1; JAA39785.1

Protein Name

Cirrhosis, autosomal recessive 1A (Cirhin)

Genbank Nucleotide ID

AACZ03104689; GABF01007938; GABD01007826; GABE01004954

Gene Name

UTP4; CIRH1A

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSPTRG00000008275.5	ENSPTRT00000015256.3	ENSPTRP00000014129.3

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.50e-15	56.0	196	231

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 4    dsvtclaf.sdtllvsGsdDgtikvWDlrtgvllks 38
           + v+++af sd++++s    g+++ WD  tg+l+ks
   Q: 196  CIVWGVAFlSDGTIISVDSAGKVQFWDSATGTLVKS 231
           67999**9*99888998889**********999875 PP

Organism

Pan troglodytes

Protein Sequence
(Fasta)

MGEFKVHRVR FFNYVPSGIR CVAYNNQSNR LAVSRTDGTV EIYNLSANYF QEKFFPGHES 60
RATEALCWAE GQRLFSAGLN GEIMEYDLQA LNIKYAMDAF GGPIWSMAAS PSGSQLLVGC 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGGAGCACTT CCGGGGCAGA GCCTGAGAGC GCGCGCGCAC GTGGGGCCGG GGCGGAGAGA 60
GGCGAGCACC GGGAAGGGGA GCGTGGGGCC GCTGGTGAGT TGGGGAAGGG GCGTGGGAAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005694--C:chromosome
GO:0001650--C:fibrillar center
GO:0034455--C:t-UTP complex
GO:0003723--F:RNA binding
GO:0030490--P:maturation of SSU-rRNA
GO:0006355--P:regulation of transcription, DNA-templated

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001161	Aegilops tauschii	24.84	2.00e-47	183.00
IUUC-Aml-001310	Ailuropoda melanoleuca	94.46	0.00e+00	1374.00
IUUC-Atr-003076	Amborella trichopoda	23.13	2.00e-36	147.00
IUUC-Apl-003367	Anas platyrhynchos	60.57	2.00e-60	224.00
IUUC-Aca-004429	Anolis carolinensis	60.81	7.00e-147	513.00
IUUC-Aly-006271	Arabidopsis lyrata	23.79	3.00e-43	170.00
IUUC-Ath-007331	Arabidopsis thaliana	25.04	4.00e-41	163.00
IUUC-Ago-007843	Ashbya gossypii	26.75	9.00e-40	158.00
IUUC-Acl-008229	Aspergillus clavatus	26.81	4.00e-40	159.00
IUUC-Afl-008438	Aspergillus flavus	26.03	1.00e-39	158.00
IUUC-Afu-008910	Aspergillus fumigatus	25.38	2.00e-38	154.00
IUUC-Ani-009321	Aspergillus nidulans	30.05	7.00e-40	159.00
IUUC-Ang-009592	Aspergillus niger	27.41	2.00e-41	164.00
IUUC-Aor-010220	Aspergillus oryzae	25.75	7.00e-40	159.00
IUUC-Ate-010317	Aspergillus terreus	25.71	4.00e-39	156.00
IUUC-Ame-010957	Astyanax mexicanus	54.29	0.00e+00	788.00
IUUC-Bgr-012057	Blumeria graminis	25.53	4.00e-36	146.00
IUUC-Bta-012473	Bos taurus	91.27	0.00e+00	1330.00
IUUC-Bdi-014203	Brachypodium distachyon	22.98	1.00e-44	174.00
IUUC-Bol-016163	Brassica oleracea	24.55	6.00e-49	189.00
IUUC-Bra-017482	Brassica rapa	24.13	1.00e-48	188.00
IUUC-Cja-019942	Callithrix jacchus	96.65	0.00e+00	1391.00
IUUC-Cfa-020549	Canis familiaris	94.40	0.00e+00	954.00
IUUC-Cpo-022088	Cavia porcellus	94.31	0.00e+00	1343.00
IUUC-Csa-023773	Chlorocebus sabaeus	98.10	0.00e+00	1405.00
IUUC-Cho-024302	Choloepus hoffmanni	83.82	0.00e+00	1180.00
IUUC-Cin-025384	Ciona intestinalis	34.34	5.00e-118	418.00
IUUC-Dre-027460	Danio rerio	53.42	0.00e+00	772.00
IUUC-Dno-029594	Dasypus novemcinctus	92.51	0.00e+00	1300.00
IUUC-Dor-030564	Dipodomys ordii	88.64	0.00e+00	813.00
IUUC-Dse-031179	Dothistroma septosporum	26.44	4.00e-38	153.00
IUUC-Dme-031603	Drosophila melanogaster	24.47	6.00e-56	212.00
IUUC-Ete-032655	Echinops telfairi	85.13	0.00e+00	1223.00
IUUC-Eca-033838	Equus caballus	94.31	0.00e+00	1365.00
IUUC-Eeu-034548	Erinaceus europaeus	89.80	0.00e+00	1292.00
IUUC-Fca-035715	Felis catus	94.90	0.00e+00	1375.00
IUUC-Fal-037394	Ficedula albicollis	57.81	0.00e+00	770.00
IUUC-Gmo-039235	Gadus morhua	48.25	0.00e+00	690.00
IUUC-Ggr-040043	Gaeumannomyces graminis	27.00	5.00e-32	133.00
IUUC-Gga-041172	Gallus gallus	61.05	0.00e+00	885.00
IUUC-Gac-042466	Gasterosteus aculeatus	53.35	0.00e+00	774.00
IUUC-Gma-044222	Glycine max	24.82	1.00e-42	168.00
IUUC-Ggo-045416	Gorilla gorilla	95.48	0.00e+00	1357.00
IUUC-Hsa-046115	Homo sapiens	99.70	0.00e+00	1389.00
IUUC-Hvu-047229	Hordeum vulgare	24.24	6.00e-44	172.00
IUUC-Itr-048015	Ictidomys tridecemlineatus	94.90	0.00e+00	1371.00
IUUC-Kpa-049370	Komagataella pastoris	21.25	3.00e-32	133.00
IUUC-Lch-050153	Latimeria chalumnae	59.80	0.00e+00	861.00
IUUC-Lpe-051220	Leersia perrieri	25.15	5.00e-49	189.00
IUUC-Loc-052617	Lepisosteus oculatus	54.47	0.00e+00	807.00
IUUC-Laf-053613	Loxodonta africana	91.55	0.00e+00	1326.00
IUUC-Mcc-055707	Macaca mulatta	97.90	0.00e+00	1368.00
IUUC-Meu-056800	Macropus eugenii	62.39	0.00e+00	879.00
IUUC-Mor-057245	Magnaporthe oryzae	27.16	2.00e-30	128.00
IUUC-Mpo-057446	Magnaporthe poae	28.02	1.00e-31	132.00
IUUC-Mtr-058748	Medicago truncatula	23.28	7.00e-45	175.00
IUUC-Mga-060018	Meleagris gallopavo	61.06	0.00e+00	857.00
IUUC-Mmr-061115	Microcebus murinus	95.19	0.00e+00	1351.00
IUUC-Mdo-062235	Monodelphis domestica	76.97	0.00e+00	1145.00
IUUC-Mmu-063158	Mus musculus	89.80	0.00e+00	1313.00
IUUC-Mac-065380	Musa acuminata	24.64	1.00e-53	204.00
IUUC-Mpu-065805	Mustela putorius furo	94.02	0.00e+00	1369.00
IUUC-Mlu-066951	Myotis lucifugus	92.27	0.00e+00	1336.00
IUUC-Nfi-068295	Neosartorya fischeri	25.76	4.00e-39	156.00
IUUC-Ncr-068880	Neurospora crassa	26.42	2.00e-37	150.00
IUUC-Nle-069657	Nomascus leucogenys	98.98	0.00e+00	1421.00
IUUC-Opr-070250	Ochotona princeps	91.40	0.00e+00	1316.00
IUUC-Ont-072642	Oreochromis niloticus	52.55	0.00e+00	730.00
IUUC-Ocu-074741	Oryctolagus cuniculus	93.73	0.00e+00	1357.00
IUUC-Oba-074974	Oryza barthii	24.73	2.00e-48	187.00
IUUC-Obr-076586	Oryza brachyantha	25.12	2.00e-44	173.00
IUUC-Ogl-077782	Oryza glaberrima	24.88	5.00e-52	199.00
IUUC-Ogu-078333	Oryza glumaepatula	24.71	1.00e-44	174.00
IUUC-Oin-079852	Oryza indica	24.64	6.00e-51	195.00
IUUC-Olo-080370	Oryza longistaminata	26.56	8.00e-42	165.00
IUUC-Ome-081442	Oryza meridionalis	24.25	9.00e-49	188.00
IUUC-Oni-082341	Oryza nivara	24.71	7.00e-45	175.00
IUUC-Opu-083824	Oryza punctata	24.58	6.00e-43	169.00
IUUC-Oru-084827	Oryza rufipogon	24.61	4.00e-48	186.00
IUUC-Osa-085742	Oryza sativa	24.64	2.00e-51	197.00
IUUC-Ola-086466	Oryzias latipes	53.76	0.00e+00	752.00
IUUC-Olu-087761	Ostreococcus lucimarinus	24.97	3.00e-53	203.00
IUUC-Oga-088721	Otolemur garnettii	85.04	0.00e+00	1192.00
IUUC-Oar-089532	Ovis aries	92.13	0.00e+00	1340.00
IUUC-Pan-092060	Papio anubis	97.42	0.00e+00	791.00
IUUC-Psi-093070	Pelodiscus sinensis	62.54	0.00e+00	875.00
IUUC-Pma-094201	Petromyzon marinus	48.97	3.00e-140	491.00
IUUC-Ppa-095599	Physcomitrella patens	28.33	1.00e-35	145.00
IUUC-Pfo-097207	Poecilia formosa	51.60	0.00e+00	732.00
IUUC-Pab-097746	Pongo abelii	98.83	0.00e+00	1419.00
IUUC-Pop-099669	Populus trichocarpa	24.48	2.00e-54	207.00
IUUC-Pca-100562	Procavia capensis	77.58	0.00e+00	1054.00
IUUC-Ppe-101747	Prunus persica	23.93	4.00e-50	192.00
IUUC-Pva-103054	Pteropus vampyrus	93.73	0.00e+00	1365.00
IUUC-Pte-104064	Pyrenophora teres	25.51	9.00e-30	125.00
IUUC-Pyt-104595	Pyrenophora triticirepentis	26.29	1.00e-31	132.00
IUUC-Rno-105155	Rattus norvegicus	91.11	0.00e+00	1329.00
IUUC-Sce-106369	Saccharomyces cerevisiae	23.67	1.00e-43	171.00
IUUC-Sha-107149	Sarcophilus harrisii	76.09	0.00e+00	1134.00
IUUC-Sja-107777	Schizosaccharomyces japonicus	28.94	6.00e-67	248.00
IUUC-Spo-108372	Schizosaccharomyces pombe	29.11	2.00e-71	263.00
IUUC-Ssl-108650	Sclerotinia sclerotiorum	26.99	9.00e-43	168.00
IUUC-Smo-108851	Selaginella moellendorffii	24.03	3.00e-54	206.00
IUUC-Sit-110454	Setaria italica	25.00	5.00e-46	179.00
IUUC-Sly-111875	Solanum lycopersicum	24.52	1.00e-52	201.00
IUUC-Stu-112275	Solanum tuberosum	23.67	1.00e-46	181.00
IUUC-Sar-113254	Sorex araneus	77.27	0.00e+00	691.00
IUUC-Sbi-114624	Sorghum bicolor	25.00	2.00e-44	173.00
IUUC-Sre-114985	Sporisorium reilianum	20.33	2.00e-16	81.60
IUUC-Tgu-117407	Taeniopygia guttata	59.77	2.00e-147	514.00
IUUC-Tru-118733	Takifugu rubripes	48.25	0.00e+00	695.00
IUUC-Tsy-119213	Tarsius syrichta	84.99	0.00e+00	1082.00
IUUC-Tni-120894	Tetraodon nigroviridis	48.50	2.00e-99	355.00
IUUC-Tca-121606	Theobroma cacao	23.90	4.00e-45	176.00
IUUC-Tre-121958	Trichoderma reesei	27.00	9.00e-39	155.00
IUUC-Tvi-122290	Trichoderma virens	26.84	2.00e-39	157.00
IUUC-Tae-125538	Triticum aestivum	25.19	1.00e-46	181.00
IUUC-Tme-126995	Tuber melanosporum	25.94	1.00e-33	138.00
IUUC-Tbe-127605	Tupaia belangeri	75.43	2.00e-69	256.00
IUUC-Ttr-128720	Tursiops truncatus	92.57	0.00e+00	1338.00
IUUC-Uma-129564	Ustilago maydis	21.78	2.00e-15	78.20
IUUC-Vpa-130412	Vicugna pacos	95.12	1.00e-142	500.00
IUUC-Vvi-131256	Vitis vinifera	25.51	1.00e-50	194.00
IUUC-Xtr-131828	Xenopus tropicalis	54.93	0.00e+00	800.00
IUUC-Xma-133394	Xiphophorus maculatus	52.24	0.00e+00	738.00
IUUC-Yli-134565	Yarrowia lipolytica	28.70	3.00e-36	146.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence