iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
PINA	HINT
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.00e-11	43.3	211	244

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 6    vtclaf.sd.tllvsGsdDgt.ikvWDlrtgvll 36
           v+++++ +   ++++ + D + i+vWDlr+ +++
   Q: 211  VRGVDYnPKrEHILVTAEDESgIHVWDLRKAKVP 244
           9999999666677666666666******998765 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MQGGSSGIGY GLKYQSRCIS DVKADTDYTS FLTGTLSLKE ENEVHLLRLS SGGSELICEG 60
LFSHPNEIWD LASCPFDQRI FSTVFSTGES FGAAIWQIPE LYGQLNSPQL ERVASLDAHV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGTCTTCTCT ACCTGAATCA GTGCGTCTGG CTCAGGTGAC AATGCAAGGA GGATCATCGG 60
GTATTGGATA CGGTTTGAAG TATCAGGTGA TTCATCATCT TCATATTTTC CTTAATTTTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

SMART

SM00320--WD40

Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex

KEGG

ath:AT1G20540

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001118	Aegilops tauschii	64.47	2.00e-115	408.00
IUUC-Aml-002348	Ailuropoda melanoleuca	35.98	6.00e-35	139.00
IUUC-Atr-003028	Amborella trichopoda	65.38	4.00e-137	479.00
IUUC-Apl-004211	Anas platyrhynchos	30.67	7.00e-47	180.00
IUUC-Aca-004893	Anolis carolinensis	34.23	1.00e-50	192.00
IUUC-Aly-005975	Arabidopsis lyrata	97.72	0.00e+00	697.00
IUUC-Ame-010619	Astyanax mexicanus	33.51	2.00e-51	195.00
IUUC-Bdi-014619	Brachypodium distachyon	66.95	3.00e-142	496.00
IUUC-Bol-016581	Brassica oleracea	94.59	0.00e+00	692.00
IUUC-Bra-017467	Brassica rapa	94.59	0.00e+00	695.00
IUUC-Cel-018344	Caenorhabditis elegans	30.17	3.00e-37	148.00
IUUC-Cja-018975	Callithrix jacchus	31.66	4.00e-49	187.00
IUUC-Cre-022554	Chlamydomonas reinhardtii	30.64	6.00e-42	163.00
IUUC-Dre-027817	Danio rerio	33.24	1.00e-53	203.00
IUUC-Dno-030097	Dasypus novemcinctus	34.32	6.00e-49	187.00
IUUC-Dme-031866	Drosophila melanogaster	31.34	6.00e-38	150.00
IUUC-Fal-036989	Ficedula albicollis	32.71	9.00e-52	196.00
IUUC-Gmo-038623	Gadus morhua	29.03	3.00e-44	171.00
IUUC-Gga-040157	Gallus gallus	35.22	2.00e-53	202.00
IUUC-Gma-044196	Glycine max	76.29	8.00e-166	575.00
IUUC-Hsa-046844	Homo sapiens	31.66	2.00e-46	179.00
IUUC-Hvu-047435	Hordeum vulgare	67.24	4.00e-141	493.00
IUUC-Itr-048726	Ictidomys tridecemlineatus	36.72	6.00e-37	147.00
IUUC-Lpe-050988	Leersia perrieri	66.54	2.00e-105	374.00
IUUC-Mcc-055575	Macaca mulatta	30.73	2.00e-44	172.00
IUUC-Meu-056807	Macropus eugenii	37.17	4.00e-31	128.00
IUUC-Mtr-058599	Medicago truncatula	74.00	1.00e-161	561.00
IUUC-Mga-059336	Meleagris gallopavo	32.88	1.00e-48	186.00
IUUC-Mac-065342	Musa acuminata	70.66	5.00e-151	526.00
IUUC-Mlu-067072	Myotis lucifugus	35.64	8.00e-32	129.00
IUUC-Oba-075849	Oryza barthii	63.01	7.00e-119	419.00
IUUC-Obr-076488	Oryza brachyantha	67.71	1.00e-130	458.00
IUUC-Ogl-077928	Oryza glaberrima	64.69	4.00e-123	433.00
IUUC-Ogu-077997	Oryza glumaepatula	63.01	5.00e-120	423.00
IUUC-Oin-079848	Oryza indica	64.26	6.00e-122	429.00
IUUC-Oni-082492	Oryza nivara	63.01	7.00e-119	419.00
IUUC-Oru-085119	Oryza rufipogon	63.01	9.00e-119	419.00
IUUC-Osa-086152	Oryza sativa	64.58	2.00e-122	431.00
IUUC-Olu-087749	Ostreococcus lucimarinus	33.33	1.00e-22	99.00
IUUC-Oar-089621	Ovis aries	28.57	3.00e-28	118.00
IUUC-Psi-093545	Pelodiscus sinensis	32.27	8.00e-51	193.00
IUUC-Pab-097916	Pongo abelii	32.66	8.00e-46	177.00
IUUC-Pop-098864	Populus trichocarpa	82.57	4.00e-178	616.00
IUUC-Pca-100797	Procavia capensis	35.60	5.00e-31	127.00
IUUC-Ppe-101796	Prunus persica	80.86	2.00e-176	610.00
IUUC-Rno-104877	Rattus norvegicus	33.97	5.00e-50	191.00
IUUC-Smo-109355	Selaginella moellendorffii	49.43	6.00e-99	353.00
IUUC-Sit-109958	Setaria italica	65.24	1.00e-138	485.00
IUUC-Sly-111871	Solanum lycopersicum	78.00	8.00e-168	582.00
IUUC-Stu-112128	Solanum tuberosum	78.29	2.00e-163	567.00
IUUC-Sbi-114122	Sorghum bicolor	64.96	1.00e-136	478.00
IUUC-Tgu-117090	Taeniopygia guttata	33.61	9.00e-48	183.00
IUUC-Tru-118548	Takifugu rubripes	30.41	2.00e-48	185.00
IUUC-Tca-121141	Theobroma cacao	82.86	4.00e-178	616.00
IUUC-Tae-122717	Triticum aestivum	66.67	6.00e-140	489.00
IUUC-Tbe-127623	Tupaia belangeri	41.18	1.00e-12	67.00
IUUC-Vvi-130871	Vitis vinifera	80.29	1.00e-173	601.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence