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Basic Information Integrated Annotations

Tag Content
iUUCD ID IUUC-Ath-007253
Ensembl Protein ID AT4G30840.1
UniProt Accession Q24JJ9; O65565; Q8LCD6; NUP43_ARATH
Genbank Protein ID CAA18209.1; CAB79802.1; AEE85817.1; ABD85161.1; AAM63718.1
Protein Name Nuclear pore complex protein NUP43; Nucleoporin 43
Genbank Nucleotide ID AL022198; AL161577; CP002687; BT024890; AY086661
Gene Name NUP43; At4g30840; F6I18.250
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT4G30840 AT4G30840.1 AT4G30840.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
PINAHINTMentha
Protein Expression/Proteomics
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 1.00e-05 26.6 183 206
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD

   S: 7    tclaf.sdtllvsGsdDgtikvWD 29
    +++++ s t +v+G++ +++WD
   Q: 183 RAVKWaSPTEFVTGGYGFGLQLWD 206
    5789984499************** PP
   

Organism Arabidopsis thaliana
Protein Sequence
(Fasta)
MEMMQDSFQV HRIPQSKYVD GVRWLPQASA LNRFFATASY DADCDSSSIE IQSLDPNPRG 60
NHNTNPLIES LSSWTSPSRV SSLEVAGNGG GGGSFKPMVS AATSSGSLHV LMIDLVEGAA 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Ath-007253|E3,WD_repeat|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CTAATTTTTC CCACCATTGT TCTCGTTTAG CTCGGCTAAA ACCCTAGAAA ACCTCTGGAG 60
CTATGGAGAT GATGCAGGAT TCGTTCCAAG TCCATAGGAT TCCACAATCG AAGTATGTCG 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Ath-007253|E3,WD_repeat|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0509--mRNA transport
KW-0906--Nuclear pore complex
KW-0539--Nucleus
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0677--Repeat
KW-0811--Translocation
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom

Gene Ontology

GO:0009507--C:chloroplast
GO:0005635--C:nuclear envelope
GO:0031080--C:nuclear pore outer ring
GO:0051028--P:mRNA transport
GO:0015031--P:protein transport

KEGG ath:AT4G30840
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001593 Ailuropoda melanoleuca 30.95 2.00e-14 72.40
IUUC-Atr-002526 Amborella trichopoda 52.38 2.00e-96 345.00
IUUC-Apl-003533 Anas platyrhynchos 29.76 3.00e-13 68.60
IUUC-Aca-004965 Anolis carolinensis 31.36 1.00e-13 69.70
IUUC-Aly-006431 Arabidopsis lyrata 96.41 0.00e+00 701.00
IUUC-Ame-011694 Astyanax mexicanus 28.57 6.00e-11 60.80
IUUC-Bta-013161 Bos taurus 29.24 6.00e-13 67.80
IUUC-Bdi-014758 Brachypodium distachyon 47.92 2.00e-81 295.00
IUUC-Bol-016489 Brassica oleracea 86.26 1.00e-149 523.00
IUUC-Bra-017838 Brassica rapa 87.47 2.00e-163 567.00
IUUC-Cja-020000 Callithrix jacchus 35.21 9.00e-05 40.40
IUUC-Cfa-021112 Canis familiaris 30.95 3.00e-14 72.00
IUUC-Cpo-022095 Cavia porcellus 30.95 2.00e-14 72.40
IUUC-Cre-022610 Chlamydomonas reinhardtii 33.33 7.00e-08 51.20
IUUC-Csa-023460 Chlorocebus sabaeus 30.95 3.00e-14 72.40
IUUC-Cho-024279 Choloepus hoffmanni 30.36 5.00e-14 70.90
IUUC-Cin-025360 Ciona intestinalis 25.73 1.00e-12 66.60
IUUC-Csv-026301 Ciona savignyi 28.24 2.00e-12 65.90
IUUC-Dre-028097 Danio rerio 28.57 7.00e-12 64.30
IUUC-Dno-029131 Dasypus novemcinctus 30.36 3.00e-14 72.00
IUUC-Dme-031834 Drosophila melanogaster 22.87 3.00e-08 52.00
IUUC-Ete-032448 Echinops telfairi 30.36 4.00e-13 68.60
IUUC-Eca-034409 Equus caballus 30.36 7.00e-14 70.90
IUUC-Eeu-035343 Erinaceus europaeus 28.03 3.00e-08 52.40
IUUC-Fca-036177 Felis catus 30.95 3.00e-14 72.40
IUUC-Fal-037657 Ficedula albicollis 29.17 2.00e-13 69.70
IUUC-Gmo-038946 Gadus morhua 26.19 1.00e-09 56.60
IUUC-Gga-041070 Gallus gallus 29.24 5.00e-13 68.20
IUUC-Gac-042442 Gasterosteus aculeatus 29.76 7.00e-12 64.30
IUUC-Gma-043812 Glycine max 59.15 2.00e-107 381.00
IUUC-Ggo-045223 Gorilla gorilla 30.36 7.00e-14 70.90
IUUC-Hsa-045956 Homo sapiens 30.36 8.00e-14 70.90
IUUC-Itr-048116 Ictidomys tridecemlineatus 29.76 1.00e-14 73.60
IUUC-Lch-050035 Latimeria chalumnae 29.59 9.00e-13 67.00
IUUC-Laf-053404 Loxodonta africana 29.76 3.00e-14 72.00
IUUC-Mcc-055813 Macaca mulatta 30.36 8.00e-14 70.90
IUUC-Meu-056388 Macropus eugenii 25.43 2.00e-08 52.80
IUUC-Mga-060193 Meleagris gallopavo 30.41 6.00e-14 71.20
IUUC-Mmr-060818 Microcebus murinus 30.36 3.00e-13 68.60
IUUC-Mdo-062822 Monodelphis domestica 28.93 3.00e-14 72.00
IUUC-Mmu-064182 Mus musculus 30.36 5.00e-14 71.20
IUUC-Mac-065317 Musa acuminata 53.58 1.00e-72 265.00
IUUC-Mpu-066865 Mustela putorius furo 30.95 2.00e-14 72.40
IUUC-Mlu-067329 Myotis lucifugus 30.95 4.00e-14 71.60
IUUC-Nle-069093 Nomascus leucogenys 30.36 6.00e-14 70.90
IUUC-Opr-070481 Ochotona princeps 30.36 6.00e-14 71.20
IUUC-Ont-072445 Oreochromis niloticus 29.76 5.00e-12 64.70
IUUC-Oan-073029 Ornithorhynchus anatinus 29.17 3.00e-13 68.90
IUUC-Ocu-074275 Oryctolagus cuniculus 30.36 7.00e-14 70.90
IUUC-Ola-086862 Oryzias latipes 29.76 4.00e-10 58.20
IUUC-Oga-088952 Otolemur garnettii 30.36 7.00e-14 70.90
IUUC-Oar-089300 Ovis aries 29.76 1.00e-13 70.10
IUUC-Ptr-091389 Pan troglodytes 30.36 8.00e-14 70.90
IUUC-Pan-092174 Papio anubis 30.36 7.00e-14 70.90
IUUC-Psi-093326 Pelodiscus sinensis 30.77 4.00e-14 71.60
IUUC-Pfo-096331 Poecilia formosa 28.57 2.00e-12 65.90
IUUC-Pab-098306 Pongo abelii 30.36 7.00e-14 71.20
IUUC-Pop-099166 Populus trichocarpa 58.17 2.00e-105 375.00
IUUC-Ppe-101380 Prunus persica 59.27 6.00e-118 416.00
IUUC-Pva-102578 Pteropus vampyrus 30.36 3.00e-14 72.40
IUUC-Rno-105146 Rattus norvegicus 30.36 5.00e-14 71.20
IUUC-Sha-107640 Sarcophilus harrisii 27.54 1.00e-14 73.20
IUUC-Sly-111767 Solanum lycopersicum 59.00 2.00e-110 391.00
IUUC-Stu-112515 Solanum tuberosum 59.72 3.00e-112 397.00
IUUC-Sbi-113809 Sorghum bicolor 59.32 3.00e-68 251.00
IUUC-Ssc-116129 Sus scrofa 30.36 9.00e-14 70.50
IUUC-Tgu-117456 Taeniopygia guttata 33.80 3.00e-04 37.70
IUUC-Tru-117630 Takifugu rubripes 28.57 6.00e-12 63.50
IUUC-Tsy-119331 Tarsius syrichta 30.95 5.00e-14 71.60
IUUC-Tni-120077 Tetraodon nigroviridis 27.38 1.00e-08 53.50
IUUC-Tca-121814 Theobroma cacao 62.71 3.00e-125 440.00
IUUC-Tae-123605 Triticum aestivum 48.76 4.00e-83 300.00
IUUC-Tbe-127359 Tupaia belangeri 32.50 5.00e-11 61.60
IUUC-Ttr-128461 Tursiops truncatus 30.36 2.00e-13 69.70
IUUC-Vpa-130162 Vicugna pacos 30.36 1.00e-13 70.50
IUUC-Vvi-131114 Vitis vinifera 58.61 4.00e-115 407.00
IUUC-Xtr-132446 Xenopus tropicalis 28.40 7.00e-13 67.40
Created Date 25-Jun-2017

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