iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

   S: 2    Htdsvtclaf.sd.tllvsGsdD..gtikvWDlrtgvllk 37
           Ht +v claf sd  +l+s + D  +t+ +WD+r+g+ll 
   Q: 105  HTHGVACLAFdSDgQHLASVGLDakNTVCIWDWRKGKLLA 144
           99*********999*******9999***********9875 PP

UBD/Beta-Prp

   S: 7    ghhksvitcvkfspdksllatg..srdgtikvwdvttgkllrslsg.heaevtavkfspdgkilvtgseD..rtikvwdlstgkcvhtl 90
           gh+++ ++ ++++p k+++atg  +rd+ + vwd++t k+l+ l+g h+ +v a++fs dgk lv+++ D  + +  wd ++g+ + t 
   Q: 725  GHDDDILS-LTIHPVKDYVATGqvGRDAAVHVWDTQTLKCLSLLKGhHQRGVCALDFSADGKCLVSVGLDdcHSVVFWDWKKGEKIATT 812
           45555555.99**********95569******************6615779*******************77677779*********** PP
   S: 91   kghedsvlslsfspsg.dklvsGshdrtirvwdletgqclee....tlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrt 174
           +gh+d++  ++ +p   dklv+ +  + i+ w+   g   ++      +g+ ++ +cv++   ++l++sG++ + + +W  k   ll+t
   Q: 813  RGHKDKIFVVKCNPHHaDKLVTVG-IKHIKFWQQAGGGFTSKrgsfGSAGKLETMMCVSYGRMEDLVFSGAATGDIYIW--KDVLLLKT 898
           **************6648888777.9******98888888879999999******************************..8899**** PP
   S: 175  ltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnght 222
            +  h+++v  +   +  k +v+g++dg v+lwd   ++c++t+   +
   Q: 899  VKA-HDGPVFAMYALD--KGFVTGGKDGIVELWDDMFERCLKTYAIKR 943
           *98.********9888..57**********************997655 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MADRTAPRCQ LRLEWVYGYR GHQCRNNLYY TASKEVVYFV AGVGVVYNTR EHSQKFFLGH 60
NDDIISLALH PDKTLIATGQ VGKEPYICIW DSYTVQTVSI LKDVHTHGVA CLAFDSDGQH 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCGGTCCCAA CGCTGGCCCC ACCCCCGGAG CCCGGGAAGG AGGAAGAGCT GGTCCCCTGC 60
GCCCCGGTGA CGAAGCCTAA CCCCGGAGCG CGGGGAGGGG AGGGAGGGCA AGCAGAGGAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR024977--Apc4_WD40_dom
IPR011048--Haem_d1
IPR005108--HELP
IPR011047--Quinoprotein_ADH-like_supfam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12894--ANAPC4_WD40
PF03451--HELP
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0015630--C:microtubule cytoskeleton
GO:0008017--F:microtubule binding

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001387	Ailuropoda melanoleuca	96.07	0.00e+00	3795.00
IUUC-Apl-003604	Anas platyrhynchos	92.42	0.00e+00	3654.00
IUUC-Aca-004572	Anolis carolinensis	89.10	0.00e+00	3564.00
IUUC-Ame-010713	Astyanax mexicanus	79.78	0.00e+00	3204.00
IUUC-Bta-012812	Bos taurus	95.66	0.00e+00	3784.00
IUUC-Cja-019191	Callithrix jacchus	95.61	0.00e+00	3760.00
IUUC-Cfa-020041	Canis familiaris	95.96	0.00e+00	3523.00
IUUC-Csa-023689	Chlorocebus sabaeus	95.08	0.00e+00	3668.00
IUUC-Cho-025038	Choloepus hoffmanni	94.39	0.00e+00	1456.00
IUUC-Cin-025205	Ciona intestinalis	61.93	0.00e+00	2576.00
IUUC-Csv-026014	Ciona savignyi	63.03	0.00e+00	2591.00
IUUC-Dno-029982	Dasypus novemcinctus	94.18	0.00e+00	3618.00
IUUC-Eca-034161	Equus caballus	94.42	0.00e+00	3627.00
IUUC-Fca-036307	Felis catus	96.07	0.00e+00	3790.00
IUUC-Fal-037332	Ficedula albicollis	91.01	0.00e+00	3571.00
IUUC-Gmo-039057	Gadus morhua	74.63	0.00e+00	2983.00
IUUC-Gac-042555	Gasterosteus aculeatus	79.99	0.00e+00	3216.00
IUUC-Ggo-045107	Gorilla gorilla	96.22	0.00e+00	3802.00
IUUC-Hsa-046482	Homo sapiens	96.27	0.00e+00	3804.00
IUUC-Itr-049023	Ictidomys tridecemlineatus	94.53	0.00e+00	3672.00
IUUC-Loc-052642	Lepisosteus oculatus	87.32	0.00e+00	3457.00
IUUC-Laf-053649	Loxodonta africana	94.03	0.00e+00	3686.00
IUUC-Mcc-055361	Macaca mulatta	95.92	0.00e+00	3331.00
IUUC-Meu-056618	Macropus eugenii	76.94	0.00e+00	1768.00
IUUC-Mga-059202	Meleagris gallopavo	91.26	0.00e+00	3534.00
IUUC-Mmr-060729	Microcebus murinus	93.86	0.00e+00	3767.00
IUUC-Mdo-062462	Monodelphis domestica	93.56	0.00e+00	3618.00
IUUC-Mmu-063865	Mus musculus	97.75	0.00e+00	3865.00
IUUC-Mpu-066724	Mustela putorius furo	96.27	0.00e+00	3801.00
IUUC-Mlu-067816	Myotis lucifugus	95.62	0.00e+00	3791.00
IUUC-Opr-070213	Ochotona princeps	92.98	0.00e+00	1974.00
IUUC-Ont-071928	Oreochromis niloticus	79.13	0.00e+00	3232.00
IUUC-Oan-073563	Ornithorhynchus anatinus	93.33	0.00e+00	3702.00
IUUC-Ocu-074531	Oryctolagus cuniculus	96.07	0.00e+00	3795.00
IUUC-Ola-086943	Oryzias latipes	78.49	0.00e+00	3135.00
IUUC-Olu-087860	Ostreococcus lucimarinus	38.68	1.00e-116	413.00
IUUC-Oga-088665	Otolemur garnettii	95.11	0.00e+00	3648.00
IUUC-Oar-090429	Ovis aries	95.91	0.00e+00	3791.00
IUUC-Ptr-091168	Pan troglodytes	87.22	0.00e+00	3383.00
IUUC-Psi-093281	Pelodiscus sinensis	90.95	0.00e+00	3617.00
IUUC-Pma-094424	Petromyzon marinus	72.10	1.00e-123	435.00
IUUC-Pab-098561	Pongo abelii	94.86	0.00e+00	3289.00
IUUC-Pca-100107	Procavia capensis	61.55	0.00e+00	1958.00
IUUC-Sha-107105	Sarcophilus harrisii	91.00	0.00e+00	3501.00
IUUC-Sar-113401	Sorex araneus	65.18	0.00e+00	1427.00
IUUC-Ssc-116282	Sus scrofa	95.94	0.00e+00	3690.00
IUUC-Tgu-116807	Taeniopygia guttata	92.24	0.00e+00	3644.00
IUUC-Tru-118040	Takifugu rubripes	78.62	0.00e+00	3161.00
IUUC-Tni-120118	Tetraodon nigroviridis	76.14	0.00e+00	3135.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence