iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Vvi-131265

Ensembl Protein ID

VIT_14s0068g00660.t01

UniProt Accession

Q19N38; Q19N38_VITVI

Genbank Protein ID

ABF66626.2; CCB46951.1

Protein Name

WD repeat 2

Genbank Nucleotide ID

DQ517914; FN595232

Gene Name

WDR2; VIT_14s0068g00660

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
VIT_14s0068g00660	VIT_14s0068g00660.t01	VIT_14s0068g00660.t01

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.50e-17	63.5	264	297

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf...sdtllvsGsdDgtikvWDlrt 32
           H++sv+++a+   s++++++++dD +  +WDl++
   Q: 264  HQASVNAIAWaphSSCHICTAGDDSQALIWDLSS 297
           99*********8644****************976 PP

Organism

Vitis vinifera

Protein Sequence
(Fasta)

MGASSDPTQD ASDEQQKRSE IYTYEAPWHI YAMNWSVRRD KKYRLAIASL LEQYPNRVEI 60
VQLDDSTGEI RSDPNLSFEH HYPPTKTIFI PDKDCQKPDL LATSSDFLRV WNISDDRVEL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTGAGAGAGA TGGGAGCGAG CAGCGATCCG ACTCAGGATG CCTCCGATGA GCAGCAGAAG 60
CGATCGGAAA TCTACACCTA CGAGGCTCCC TGGCACATCT ACGCCATGAA TTGGAGCGTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005634--C:nucleus

KEGG

vvi:100241251

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002310	Ailuropoda melanoleuca	57.10	4.00e-96	343.00
IUUC-Atr-002576	Amborella trichopoda	87.98	0.00e+00	638.00
IUUC-Apl-003746	Anas platyrhynchos	57.10	4.00e-96	343.00
IUUC-Aca-005293	Anolis carolinensis	58.31	3.00e-115	407.00
IUUC-Aly-006500	Arabidopsis lyrata	92.77	0.00e+00	663.00
IUUC-Ath-006739	Arabidopsis thaliana	93.06	0.00e+00	664.00
IUUC-Ame-010643	Astyanax mexicanus	53.35	8.00e-101	359.00
IUUC-Bta-013199	Bos taurus	58.31	6.00e-115	406.00
IUUC-Bdi-014374	Brachypodium distachyon	69.59	3.00e-147	514.00
IUUC-Bra-017922	Brassica rapa	91.62	0.00e+00	654.00
IUUC-Cel-018487	Caenorhabditis elegans	50.55	2.00e-101	362.00
IUUC-Cja-018736	Callithrix jacchus	58.31	6.00e-115	406.00
IUUC-Cfa-020446	Canis familiaris	58.31	6.00e-115	406.00
IUUC-Cpo-022424	Cavia porcellus	58.31	6.00e-115	406.00
IUUC-Cre-022609	Chlamydomonas reinhardtii	65.13	7.00e-133	465.00
IUUC-Csa-024013	Chlorocebus sabaeus	57.05	6.00e-99	354.00
IUUC-Cho-024507	Choloepus hoffmanni	57.67	4.00e-96	343.00
IUUC-Cin-025620	Ciona intestinalis	59.01	1.00e-116	411.00
IUUC-Csv-026111	Ciona savignyi	59.30	5.00e-117	412.00
IUUC-Dre-027940	Danio rerio	58.02	3.00e-115	407.00
IUUC-Dno-029520	Dasypus novemcinctus	58.31	6.00e-115	406.00
IUUC-Dor-030262	Dipodomys ordii	61.62	8.00e-33	133.00
IUUC-Dme-031639	Drosophila melanogaster	56.90	1.00e-113	401.00
IUUC-Ete-032605	Echinops telfairi	50.00	1.00e-86	312.00
IUUC-Eca-033668	Equus caballus	54.15	4.00e-98	350.00
IUUC-Fca-035942	Felis catus	58.31	6.00e-115	406.00
IUUC-Fal-037544	Ficedula albicollis	58.31	6.00e-115	406.00
IUUC-Gmo-038850	Gadus morhua	58.31	2.00e-115	407.00
IUUC-Gga-040439	Gallus gallus	58.31	6.00e-115	406.00
IUUC-Gac-041776	Gasterosteus aculeatus	58.02	5.00e-115	406.00
IUUC-Gma-043558	Glycine max	95.06	0.00e+00	679.00
IUUC-Ggo-044490	Gorilla gorilla	58.31	6.00e-115	406.00
IUUC-Hsa-046015	Homo sapiens	58.31	6.00e-115	406.00
IUUC-Hvu-047667	Hordeum vulgare	69.49	3.00e-148	517.00
IUUC-Itr-048428	Ictidomys tridecemlineatus	58.31	6.00e-115	406.00
IUUC-Lch-049754	Latimeria chalumnae	58.89	6.00e-116	409.00
IUUC-Lpe-050741	Leersia perrieri	70.47	2.00e-150	524.00
IUUC-Loc-052351	Lepisosteus oculatus	57.68	6.00e-113	399.00
IUUC-Laf-054077	Loxodonta africana	58.31	6.00e-115	406.00
IUUC-Mcc-055728	Macaca mulatta	58.31	6.00e-115	406.00
IUUC-Meu-056685	Macropus eugenii	51.93	4.00e-85	306.00
IUUC-Mtr-057654	Medicago truncatula	92.61	0.00e+00	670.00
IUUC-Mla-058866	Melampsora laricipopulina	32.27	2.00e-47	182.00
IUUC-Mga-059566	Meleagris gallopavo	57.10	4.00e-96	343.00
IUUC-Mmr-060831	Microcebus murinus	58.31	6.00e-115	406.00
IUUC-Mdo-062612	Monodelphis domestica	58.31	6.00e-115	406.00
IUUC-Mmu-063399	Mus musculus	58.31	6.00e-115	406.00
IUUC-Mac-065226	Musa acuminata	78.06	2.00e-154	536.00
IUUC-Mpu-065951	Mustela putorius furo	58.31	6.00e-115	406.00
IUUC-Mlu-067858	Myotis lucifugus	58.43	7.00e-114	402.00
IUUC-Nle-070059	Nomascus leucogenys	58.31	6.00e-115	406.00
IUUC-Opr-070572	Ochotona princeps	58.65	3.00e-115	407.00
IUUC-Ont-071420	Oreochromis niloticus	56.56	8.00e-111	392.00
IUUC-Ocu-074105	Oryctolagus cuniculus	58.31	6.00e-115	406.00
IUUC-Oba-075409	Oryza barthii	70.57	2.00e-149	521.00
IUUC-Obr-076284	Oryza brachyantha	68.88	2.00e-129	454.00
IUUC-Ogl-076984	Oryza glaberrima	70.57	2.00e-149	521.00
IUUC-Ogu-078283	Oryza glumaepatula	70.31	2.00e-149	521.00
IUUC-Olo-081042	Oryza longistaminata	74.36	3.00e-111	394.00
IUUC-Ome-081174	Oryza meridionalis	70.31	2.00e-149	521.00
IUUC-Oni-082033	Oryza nivara	70.31	2.00e-149	521.00
IUUC-Opu-084034	Oryza punctata	71.20	2.00e-150	524.00
IUUC-Oru-084908	Oryza rufipogon	69.43	3.00e-132	464.00
IUUC-Osa-085678	Oryza sativa	70.31	2.00e-149	521.00
IUUC-Ola-086324	Oryzias latipes	58.31	1.00e-115	408.00
IUUC-Olu-087620	Ostreococcus lucimarinus	74.55	4.00e-150	522.00
IUUC-Oga-088446	Otolemur garnettii	58.31	6.00e-115	406.00
IUUC-Oar-090168	Ovis aries	58.31	6.00e-115	406.00
IUUC-Ptr-090691	Pan troglodytes	58.48	4.00e-115	406.00
IUUC-Pan-092772	Papio anubis	58.31	6.00e-115	406.00
IUUC-Psi-093304	Pelodiscus sinensis	59.56	5.00e-91	326.00
IUUC-Pma-094292	Petromyzon marinus	56.95	2.00e-96	344.00
IUUC-Ppa-095734	Physcomitrella patens	81.27	3.00e-165	573.00
IUUC-Pfo-097157	Poecilia formosa	58.31	1.00e-115	408.00
IUUC-Pab-097898	Pongo abelii	57.05	1.00e-98	353.00
IUUC-Pop-099594	Populus trichocarpa	95.09	0.00e+00	679.00
IUUC-Pca-100404	Procavia capensis	58.65	3.00e-115	407.00
IUUC-Ppe-102015	Prunus persica	92.70	0.00e+00	666.00
IUUC-Pgr-103490	Puccinia graminis	34.26	2.00e-55	208.00
IUUC-Ptt-103946	Puccinia triticina	36.48	2.00e-54	205.00
IUUC-Rno-104961	Rattus norvegicus	58.31	6.00e-115	406.00
IUUC-Sha-107196	Sarcophilus harrisii	46.26	7.00e-89	319.00
IUUC-Smo-109596	Selaginella moellendorffii	78.27	3.00e-154	536.00
IUUC-Sit-110625	Setaria italica	76.25	5.00e-109	386.00
IUUC-Sly-111410	Solanum lycopersicum	91.93	0.00e+00	660.00
IUUC-Stu-112854	Solanum tuberosum	91.93	0.00e+00	660.00
IUUC-Sar-113705	Sorex araneus	52.49	6.00e-88	316.00
IUUC-Sbi-114474	Sorghum bicolor	68.04	3.00e-146	510.00
IUUC-Ssc-116028	Sus scrofa	58.31	6.00e-115	406.00
IUUC-Tgu-117189	Taeniopygia guttata	58.31	6.00e-115	406.00
IUUC-Tru-117581	Takifugu rubripes	58.31	2.00e-115	407.00
IUUC-Tsy-119425	Tarsius syrichta	44.33	5.00e-64	236.00
IUUC-Tni-120649	Tetraodon nigroviridis	58.02	2.00e-113	401.00
IUUC-Tca-121561	Theobroma cacao	94.80	0.00e+00	675.00
IUUC-Tae-123331	Triticum aestivum	69.59	3.00e-147	513.00
IUUC-Tur-126531	Triticum urartu	71.35	1.00e-149	522.00
IUUC-Tbe-127919	Tupaia belangeri	58.65	3.00e-115	407.00
IUUC-Ttr-129135	Tursiops truncatus	49.82	6.00e-72	263.00
IUUC-Vpa-130486	Vicugna pacos	34.78	1.00e-42	166.00
IUUC-Xtr-132175	Xenopus tropicalis	58.31	4.00e-115	407.00
IUUC-Xma-134129	Xiphophorus maculatus	58.31	1.00e-115	408.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence