iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB

Status

Reviewed

Details

Family	Domain	References (PMIDs)
UBD/Alpha-Helix/UIM	UIM	11406394

Classification

Family	E-value	Score	Start	End
UBD/Alpha-Helix/UIM	1.60e-08	34.5	244	260

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UIM

   S: 1    dEdeeLqlAlalSlqEe 17
           dEde+L++A+++Sl+  
   Q: 244  DEDEQLAKAVEESLKGK 260
           7*************976 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Ubiquitin receptor that probably regulates developmental process.

Protein Sequence
(Fasta)

MASDYYSSDD EGFGEKVGLI GEKDRFEAET IHVIEVSQHE ADIQKAKQRS LATHEAEKLD 60
LATHEAEQLD LAIQEFSRQE EEEERRRTRE LENDAQIANV LQHEERERLI NKKTALEDEE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCCTCTG ATTACTATTC ATCTGACGAT GAAGGGTTTG GGTAAGTGTT GACTTTTTTT 60
AATAATTATC TCAATTTCGG TCGAGTCGTT AGTTATTAAC TTTGACGGCT CGGAAAAAGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0440--LIM domain
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0677--Repeat
KW-0862--Zinc

Interpro

IPR022087--DA1-like
IPR003903--UIM_dom
IPR001781--Znf_LIM

PROSITE

PS00478--LIM_DOMAIN_1
PS50023--LIM_DOMAIN_2
PS50330--UIM
PS00142--ZINC_PROTEASE

Pfam

PF12315--DA1-like
PF00412--LIM
PF02809--UIM

SMART

Gene Ontology

GO:0043130--F:ubiquitin binding
GO:0008270--F:zinc ion binding

KEGG

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aca-004462	Anolis carolinensis	36.84	3.00e-02	31.60
IUUC-Aly-006039	Arabidopsis lyrata	71.84	0.00e+00	795.00
IUUC-Ame-011113	Astyanax mexicanus	45.16	2.00e-03	35.00
IUUC-Bol-016606	Brassica oleracea	69.94	0.00e+00	666.00
IUUC-Bra-016788	Brassica rapa	67.34	1.00e-152	531.00
IUUC-Dre-028335	Danio rerio	44.74	2.00e-04	38.10
IUUC-Gmo-038981	Gadus morhua	38.64	4.00e-04	37.70
IUUC-Gac-041929	Gasterosteus aculeatus	38.64	5.00e-05	40.40
IUUC-Ggo-044835	Gorilla gorilla	36.84	3.20e-02	31.60
IUUC-Lpe-050858	Leersia perrieri	45.93	3.00e-104	371.00
IUUC-Loc-052082	Lepisosteus oculatus	41.94	8.00e-03	33.50
IUUC-Mga-059948	Meleagris gallopavo	36.73	5.90e-02	30.40
IUUC-Ont-071811	Oreochromis niloticus	38.64	4.00e-05	41.20
IUUC-Opu-083815	Oryza punctata	46.22	4.00e-104	371.00
IUUC-Ola-086514	Oryzias latipes	44.74	3.00e-04	38.50
IUUC-Pan-092656	Papio anubis	36.84	2.70e-02	31.60
IUUC-Pno-094933	Phaeosphaeria nodorum	30.67	8.00e-05	42.00
IUUC-Pfo-097079	Poecilia formosa	36.96	4.00e-05	40.80
IUUC-Ptt-104003	Puccinia triticina	33.33	8.00e-03	34.70
IUUC-Pyt-104720	Pyrenophora triticirepentis	27.40	2.00e-03	36.20
IUUC-Sar-113038	Sorex araneus	48.48	3.00e-04	40.00
IUUC-Tru-118213	Takifugu rubripes	38.64	1.00e-04	39.30
IUUC-Tni-120676	Tetraodon nigroviridis	38.64	7.00e-05	40.00
IUUC-Ttr-128639	Tursiops truncatus	50.00	2.40e-01	28.50
IUUC-Xtr-131827	Xenopus tropicalis	36.84	1.80e-02	32.30

Created Date

25-Jun-2017

Functional Description