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Tag Content
iUUCD ID IUUC-Kpa-049148
Ensembl Protein ID CAY67109
UniProt Accession P53024; C4QV39; SEC13_KOMPG
Genbank Protein ID AAB01155.2; CAY67109.1
Protein Name Protein transport protein SEC13
Genbank Nucleotide ID U52430; FN392319
Gene Name SEC13; PAS_chr1-3_0057
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
PAS_chr1-3_0057 CAY67109 CAY67109
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 9.60e-31 102.7 51 83
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf..sd..tllvsGsdDgtikvWD 29
           gH+++v+ +a+  +    +l+s+s+Dg++ +W 
   Q: 51   GHEGPVWQVAWahPKfgVILASCSYDGKVLIWK 83
           8***********95554779************8 PP
   
Organism Komagataella pastoris
Functional Description
(View)

Functional Description


     Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. It also functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. SEC13 is required for efficient mRNA export from the nucleus to the cytoplasm and for correct nuclear pore biogenesis and distribution (By similarity).
 Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. It also functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. SEC13 is required for efficient mRNA export from the nucleus to the cytoplasm and for correct nuclear pore biogenesis and distribution (By similarity).
Protein Sequence
(Fasta)
MVTIGNAHDD LIHDAVLDYY GRRLATCSSD KTIKIFEIDG ENQRLVETLI GHEGPVWQVA 60
WAHPKFGVIL ASCSYDGKVL IWKEDNGVWN KVAEHSVHQA SVNSVSWAPH EYGPVLLCAS 120
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Protein Fasta Sequence


>IUUC-Kpa-049148|E3,WD_repeat|Komagataella pastoris
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Nucleotide Sequence
(Fasta)
ATGGCAAGTA TAGTTTTCCG TACAAGTCCC TTGCTGGTCT GCTTCTCTAT TCAATGTATT 60
TGTACTAACC CTAGTAGGTT ACAATTGGAA ACGCACATGA TGACCTAATC CATGACGCCG 120
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Nucleotide Fasta Sequence


>IUUC-Kpa-049148|E3,WD_repeat|Komagataella pastoris
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Sequence Source Ensembl
Keyword

KW-0002--3D-structure
KW-0181--Complete proteome
KW-0968--Cytoplasmic vesicle
KW-0256--Endoplasmic reticulum
KW-0931--ER-Golgi transport
KW-0472--Membrane
KW-0509--mRNA transport
KW-0906--Nuclear pore complex
KW-0539--Nucleus
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0677--Repeat
KW-0811--Translocation
KW-0813--Transport
KW-0853--WD repeat
Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF00400--WD40
SMART

SM00320--WD40
Gene Ontology

GO:0030127--C:COPII vesicle coat
GO:0005789--C:endoplasmic reticulum membrane
GO:0000139--C:Golgi membrane
GO:0031080--C:nuclear pore outer ring
GO:0035859--C:Seh1-associated complex
GO:0005198--F:structural molecule activity
GO:0090114--P:COPII-coated vesicle budding
GO:0051028--P:mRNA transport
GO:0031081--P:nuclear pore distribution
GO:0043547--P:positive regulation of GTPase activity
GO:1904263--P:positive regulation of TORC1 signaling
GO:0045893--P:positive regulation of transcription, DNA-templated
GO:0015031--P:protein transport
GO:0030433--P:ubiquitin-dependent ERAD pathway
KEGG ppa:PAS_chr1-3_0057
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000671 Aegilops tauschii 47.51 8.00e-77 278.00
IUUC-Aml-001832 Ailuropoda melanoleuca 52.98 6.00e-88 315.00
IUUC-Atr-002914 Amborella trichopoda 49.67 2.00e-78 283.00
IUUC-Apl-003992 Anas platyrhynchos 54.11 4.00e-84 302.00
IUUC-Aca-005283 Anolis carolinensis 52.32 4.00e-86 309.00
IUUC-Aly-005654 Arabidopsis lyrata 47.49 2.00e-73 266.00
IUUC-Ath-006816 Arabidopsis thaliana 47.83 2.00e-73 266.00
IUUC-Ago-007827 Ashbya gossypii 67.46 2.00e-122 429.00
IUUC-Acl-008205 Aspergillus clavatus 58.86 3.00e-96 342.00
IUUC-Afl-008748 Aspergillus flavus 58.55 2.00e-98 349.00
IUUC-Afu-008791 Aspergillus fumigatus 58.86 5.00e-96 342.00
IUUC-Ani-009152 Aspergillus nidulans 57.79 4.00e-99 352.00
IUUC-Ang-009765 Aspergillus niger 58.44 1.00e-99 353.00
IUUC-Aor-009927 Aspergillus oryzae 58.39 2.00e-95 339.00
IUUC-Ate-010248 Aspergillus terreus 58.12 5.00e-98 348.00
IUUC-Ame-011478 Astyanax mexicanus 52.32 7.00e-87 311.00
IUUC-Bgr-012276 Blumeria graminis 53.38 9.00e-94 334.00
IUUC-Bta-012700 Bos taurus 52.65 6.00e-87 311.00
IUUC-Bci-013722 Botrytis cinerea 56.77 5.00e-98 348.00
IUUC-Bdi-014818 Brachypodium distachyon 47.51 3.00e-76 276.00
IUUC-Bol-015779 Brassica oleracea 48.46 1.00e-73 267.00
IUUC-Bra-016973 Brassica rapa 48.45 2.00e-74 271.00
IUUC-Cel-018479 Caenorhabditis elegans 42.11 4.00e-62 229.00
IUUC-Cja-019956 Callithrix jacchus 52.63 1.00e-80 290.00
IUUC-Cfa-020752 Canis familiaris 52.65 3.00e-87 312.00
IUUC-Cpo-021871 Cavia porcellus 52.98 3.00e-88 316.00
IUUC-Cre-022797 Chlamydomonas reinhardtii 47.32 8.00e-77 278.00
IUUC-Csa-023393 Chlorocebus sabaeus 52.65 5.00e-87 312.00
IUUC-Cho-024786 Choloepus hoffmanni 48.15 4.00e-34 136.00
IUUC-Cin-025332 Ciona intestinalis 50.17 8.00e-83 298.00
IUUC-Csv-025926 Ciona savignyi 50.83 2.00e-81 293.00
IUUC-Cgl-026413 Colletotrichum gloeosporioides 56.31 2.00e-94 336.00
IUUC-Cne-027054 Cryptococcus neoformans 48.58 9.00e-81 291.00
IUUC-Cme-027165 Cyanidioschyzon merolae 35.13 1.00e-51 195.00
IUUC-Dre-027782 Danio rerio 51.66 7.00e-85 304.00
IUUC-Dno-029628 Dasypus novemcinctus 52.32 2.00e-87 313.00
IUUC-Dor-030650 Dipodomys ordii 52.38 2.00e-66 243.00
IUUC-Dse-031206 Dothistroma septosporum 53.92 6.00e-92 328.00
IUUC-Dme-031854 Drosophila melanogaster 51.36 8.00e-79 285.00
IUUC-Ete-032618 Echinops telfairi 34.44 3.00e-42 162.00
IUUC-Eca-033268 Equus caballus 52.98 2.00e-87 313.00
IUUC-Fca-035918 Felis catus 52.65 2.00e-87 313.00
IUUC-Fal-037551 Ficedula albicollis 53.06 2.00e-79 286.00
IUUC-Fox-037763 Fusarium oxysporum 56.54 2.00e-97 346.00
IUUC-Fso-038341 Fusarium solani 55.66 4.00e-95 338.00
IUUC-Gmo-038638 Gadus morhua 51.99 8.00e-86 308.00
IUUC-Ggr-039865 Gaeumannomyces graminis 57.28 4.00e-96 342.00
IUUC-Gga-040193 Gallus gallus 53.31 6.00e-87 311.00
IUUC-Gma-042949 Glycine max 48.48 1.00e-76 277.00
IUUC-Ggo-045252 Gorilla gorilla 52.65 2.00e-87 313.00
IUUC-Hsa-046565 Homo sapiens 52.65 2.00e-87 313.00
IUUC-Hvu-047835 Hordeum vulgare 48.50 9.00e-78 281.00
IUUC-Itr-048587 Ictidomys tridecemlineatus 52.98 2.00e-87 313.00
IUUC-Lch-050421 Latimeria chalumnae 52.65 3.00e-87 312.00
IUUC-Lpe-051187 Leersia perrieri 47.02 2.00e-75 276.00
IUUC-Loc-052167 Lepisosteus oculatus 51.99 1.00e-86 310.00
IUUC-Lma-053250 Leptosphaeria maculans 55.18 3.00e-89 319.00
IUUC-Laf-054304 Loxodonta africana 52.65 4.00e-87 312.00
IUUC-Mcc-055519 Macaca mulatta 52.65 6.00e-87 311.00
IUUC-Meu-056439 Macropus eugenii 52.32 2.00e-86 310.00
IUUC-Mor-057241 Magnaporthe oryzae 57.24 2.00e-91 326.00
IUUC-Mpo-057373 Magnaporthe poae 53.66 5.00e-81 291.00
IUUC-Mtr-058412 Medicago truncatula 48.82 1.00e-76 277.00
IUUC-Mla-058966 Melampsora laricipopulina 48.34 8.00e-89 318.00
IUUC-Mga-060066 Meleagris gallopavo 54.11 4.00e-84 302.00
IUUC-Mvi-060290 Microbotryum violaceum 49.38 9.00e-86 310.00
IUUC-Mmr-060717 Microcebus murinus 53.31 6.00e-88 315.00
IUUC-Mdo-062496 Monodelphis domestica 52.32 1.00e-86 310.00
IUUC-Mmu-063490 Mus musculus 53.29 2.00e-88 316.00
IUUC-Mac-064519 Musa acuminata 47.99 8.00e-76 274.00
IUUC-Mpu-066601 Mustela putorius furo 52.65 3.00e-87 312.00
IUUC-Mlu-067501 Myotis lucifugus 52.32 4.00e-87 312.00
IUUC-Nfi-068360 Neosartorya fischeri 55.04 4.00e-75 271.00
IUUC-Ncr-068928 Neurospora crassa 57.10 4.00e-97 345.00
IUUC-Nle-069028 Nomascus leucogenys 52.32 2.00e-87 313.00
IUUC-Opr-070446 Ochotona princeps 53.77 8.00e-84 301.00
IUUC-Ont-071587 Oreochromis niloticus 52.65 4.00e-86 309.00
IUUC-Oan-073211 Ornithorhynchus anatinus 50.99 4.00e-85 305.00
IUUC-Ocu-074306 Oryctolagus cuniculus 53.31 5.00e-87 311.00
IUUC-Oba-075069 Oryza barthii 47.18 3.00e-75 272.00
IUUC-Obr-076667 Oryza brachyantha 47.51 3.00e-76 276.00
IUUC-Ogl-077208 Oryza glaberrima 47.18 3.00e-75 272.00
IUUC-Ogu-078513 Oryza glumaepatula 47.18 3.00e-75 272.00
IUUC-Oin-079094 Oryza indica 47.18 3.00e-75 272.00
IUUC-Olo-080473 Oryza longistaminata 47.18 3.00e-75 272.00
IUUC-Ome-081643 Oryza meridionalis 47.18 3.00e-75 272.00
IUUC-Oni-082589 Oryza nivara 47.18 3.00e-75 272.00
IUUC-Opu-083677 Oryza punctata 47.18 3.00e-75 272.00
IUUC-Oru-084537 Oryza rufipogon 47.18 3.00e-75 272.00
IUUC-Osa-085449 Oryza sativa 47.18 3.00e-75 272.00
IUUC-Ola-087226 Oryzias latipes 52.32 2.00e-86 309.00
IUUC-Olu-087893 Ostreococcus lucimarinus 45.55 1.00e-65 240.00
IUUC-Oga-088837 Otolemur garnettii 53.31 5.00e-88 315.00
IUUC-Oar-089594 Ovis aries 52.65 9.00e-87 311.00
IUUC-Ptr-091132 Pan troglodytes 52.65 1.00e-87 313.00
IUUC-Psi-093568 Pelodiscus sinensis 53.40 3.00e-84 302.00
IUUC-Pma-094172 Petromyzon marinus 48.10 2.00e-34 136.00
IUUC-Pno-094955 Phaeosphaeria nodorum 55.14 3.00e-88 316.00
IUUC-Ppa-095966 Physcomitrella patens 48.46 2.00e-72 263.00
IUUC-Pfo-096063 Poecilia formosa 52.98 8.00e-87 311.00
IUUC-Pab-098674 Pongo abelii 52.32 2.00e-86 310.00
IUUC-Pop-099402 Populus trichocarpa 47.14 1.00e-74 270.00
IUUC-Pca-100824 Procavia capensis 42.19 6.00e-63 232.00
IUUC-Ppe-101278 Prunus persica 49.49 1.00e-75 274.00
IUUC-Pva-103161 Pteropus vampyrus 49.34 4.00e-80 289.00
IUUC-Pgr-103573 Puccinia graminis 50.63 2.00e-90 323.00
IUUC-Ptt-103700 Puccinia triticina 49.68 5.00e-87 311.00
IUUC-Pte-104267 Pyrenophora teres 54.27 3.00e-86 309.00
IUUC-Pyt-104535 Pyrenophora triticirepentis 54.27 2.00e-83 300.00
IUUC-Rno-104833 Rattus norvegicus 53.31 7.00e-88 314.00
IUUC-Sce-106437 Saccharomyces cerevisiae 68.35 3.00e-118 415.00
IUUC-Sha-106611 Sarcophilus harrisii 52.32 2.00e-86 310.00
IUUC-Sja-107654 Schizosaccharomyces japonicus 56.90 7.00e-101 357.00
IUUC-Spo-108362 Schizosaccharomyces pombe 56.90 2.00e-101 359.00
IUUC-Smo-108797 Selaginella moellendorffii 47.83 3.00e-77 279.00
IUUC-Sit-110132 Setaria italica 47.84 2.00e-76 276.00
IUUC-Sly-111852 Solanum lycopersicum 50.00 3.00e-76 276.00
IUUC-Stu-112195 Solanum tuberosum 49.83 4.00e-77 279.00
IUUC-Sbi-114229 Sorghum bicolor 48.84 4.00e-78 282.00
IUUC-Sre-114898 Sporisorium reilianum 48.70 2.00e-93 333.00
IUUC-Ssc-115995 Sus scrofa 60.74 3.00e-48 181.00
IUUC-Tgu-116793 Taeniopygia guttata 52.65 8.00e-82 294.00
IUUC-Tru-117797 Takifugu rubripes 51.99 1.00e-85 307.00
IUUC-Tni-120366 Tetraodon nigroviridis 51.99 2.00e-85 306.00
IUUC-Tca-121068 Theobroma cacao 48.11 2.00e-74 270.00
IUUC-Tre-121899 Trichoderma reesei 56.35 5.00e-96 341.00
IUUC-Tvi-122380 Trichoderma virens 57.52 1.00e-97 347.00
IUUC-Tae-123998 Triticum aestivum 48.17 2.00e-78 283.00
IUUC-Tur-126202 Triticum urartu 48.17 7.00e-78 281.00
IUUC-Tme-127181 Tuber melanosporum 56.19 1.00e-101 360.00
IUUC-Ttr-128448 Tursiops truncatus 52.17 2.00e-69 253.00
IUUC-Uma-129661 Ustilago maydis 49.42 3.00e-94 336.00
IUUC-Vda-129666 Verticillium dahliae 58.02 8.00e-97 344.00
IUUC-Vpa-130318 Vicugna pacos 52.65 3.00e-87 312.00
IUUC-Vvi-130868 Vitis vinifera 49.83 2.00e-78 283.00
IUUC-Xtr-131859 Xenopus tropicalis 53.97 9.00e-88 314.00
IUUC-Xma-133898 Xiphophorus maculatus 52.98 8.00e-87 311.00
IUUC-Yli-134559 Yarrowia lipolytica 66.67 6.00e-118 414.00
Created Date 25-Jun-2017

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