iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Cre-022756

UUCD1 version

UUC-ChR-00089

Ensembl Protein ID

EDP08366

UniProt Accession

A8HYC0; A8HYC0_CHLRE

Genbank Protein ID

ADF43155.1; EDP08366.1

Protein Name

Nucleolar protein, component of the U3 processome; UTP1p

Genbank Nucleotide ID

GU814014; DS496110

Gene Name

UTP1; UTP1p; CHLREDRAFT_195954

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
CHLREDRAFT_195954	EDP08366	EDP08366

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.30e-33	111.5	549	580
UBD/Beta-Prp	5.20e-90	301.2	381	639

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf...sdtllvsGsdDgtikvWDl 30
           gH+++v++laf   +  ll+sGs+D t++ WD+
   Q: 549  GHEGPVSALAFspiT-SLLASGSWDRTVRTWDV 580
           8**********8663.699*************7 PP

UBD/Beta-Prp

   S: 11   svitcvkfspdksllatgsrd.gtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklv 110
           ++it+++f + +++la+g+++ g + vw++++++++ + +gh   +t++ fspdg +++tg++D  +kv+  s+g c++t++ h++ v++++f psg+ l+
   Q: 381  ERITSLAFNDTGDWLAVGCARlGQLLVWEWRSETYVLKQQGHYHDITTTAFSPDGALIATGADDCKVKVFQQSSGFCFVTFSDHSAPVTAVTFLPSGHALL 481
           679****************87699***************************************************************************** PP
   S: 111  sGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDr.tvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlq 210
           s+s d t+r wdl  +  ++++ ++      +++v+p g ++ +G+ D+ ++ +W+lktg+ll+ l g h+++v  l+f++    l+sgs d+tv+ wd+ 
   Q: 482  SASLDGTVRAWDLVRYRNFRTLTAPSPVQFGSLAVDPAGEVVCAGTVDTfQIYVWSLKTGRLLDVLAG-HEGPVSALAFSPITSLLASGSWDRTVRTWDVY 581
           ********************88888888899*****************846***************99.******************************** PP
   S: 211  ....tgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhn 264
                g     + +h+  v+ +++ p++  l+ ++ Dgsi++Wd   g l +t+++++
   Q: 582  ggggGGGSAGDVLDHRHDVLALAMRPDGRQLAAATLDGSIYLWDPVEGVLEGTIEGRR 639
           999866669999********************************88888888887766 PP

Organism

Chlamydomonas reinhardtii

Protein Sequence
(Fasta)

MNYVFSNLLG APYRGGTLLI QNNELLTPVG NRVGQVNLTE STSKCLPFEN LTQIRVLCAS 60
PDGTLLVSVD KDGRALLINR KRQTLLHHFS FKGPVACARF SPDGRYIAVA VGRLVQVWCC 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAACTACG TGTTTTCCAA CCTATTGGGT GCGCCCTACC GCGGCGGCAC CCTGCTTATT 60
CAGAATAATG AGCTCCTAAC GCCCGTTGGA AACCGTGTTG GTCAGGTCAG TATTATCAAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR003143--Cyt_cd1_C
IPR020472--G-protein_beta_WD-40_rep
IPR027145--PWP2
IPR011044--Quino_amine_DH_bsu
IPR007148--SSU_processome_Utp12
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04003--Utp12
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0034388--C:Pwp2p-containing subcomplex of 90S preribosome
GO:0032040--C:small-subunit processome
GO:0030515--F:snoRNA binding
GO:0000462--P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000028--P:ribosomal small subunit assembly

KEGG

cre:CHLREDRAFT_195954

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001932	Ailuropoda melanoleuca	43.31	5.00e-153	533.00
IUUC-Atr-003033	Amborella trichopoda	50.70	0.00e+00	644.00
IUUC-Apl-003219	Anas platyrhynchos	30.49	5.00e-26	111.00
IUUC-Aca-004950	Anolis carolinensis	32.74	1.00e-30	126.00
IUUC-Aly-006213	Arabidopsis lyrata	48.21	8.00e-174	602.00
IUUC-Ath-006593	Arabidopsis thaliana	48.52	7.00e-174	602.00
IUUC-Ago-007916	Ashbya gossypii	42.83	2.00e-141	494.00
IUUC-Acl-008225	Aspergillus clavatus	44.18	7.00e-153	532.00
IUUC-Afl-008390	Aspergillus flavus	43.29	4.00e-154	536.00
IUUC-Afu-009039	Aspergillus fumigatus	45.08	6.00e-156	543.00
IUUC-Ani-009228	Aspergillus nidulans	40.86	1.00e-122	432.00
IUUC-Ang-009663	Aspergillus niger	42.54	3.00e-146	511.00
IUUC-Aor-009923	Aspergillus oryzae	43.29	4.00e-154	536.00
IUUC-Ate-010264	Aspergillus terreus	44.26	6.00e-151	526.00
IUUC-Ame-010790	Astyanax mexicanus	49.17	2.00e-33	134.00
IUUC-Bgr-012066	Blumeria graminis	45.44	2.00e-151	527.00
IUUC-Bta-012399	Bos taurus	42.57	6.00e-145	506.00
IUUC-Bci-013757	Botrytis cinerea	44.57	1.00e-148	518.00
IUUC-Bdi-015028	Brachypodium distachyon	51.41	0.00e+00	632.00
IUUC-Bol-016040	Brassica oleracea	48.98	2.00e-176	611.00
IUUC-Bra-017250	Brassica rapa	48.83	2.00e-175	608.00
IUUC-Cel-018690	Caenorhabditis elegans	38.30	5.00e-112	397.00
IUUC-Cja-019229	Callithrix jacchus	43.58	4.00e-156	543.00
IUUC-Cfa-020504	Canis familiaris	42.42	3.00e-152	530.00
IUUC-Cpo-021574	Cavia porcellus	42.84	6.00e-153	533.00
IUUC-Csa-023436	Chlorocebus sabaeus	43.38	3.00e-148	517.00
IUUC-Cin-025397	Ciona intestinalis	48.44	2.00e-121	427.00
IUUC-Csv-026194	Ciona savignyi	46.08	9.00e-124	436.00
IUUC-Cgl-026684	Colletotrichum gloeosporioides	42.75	1.00e-140	492.00
IUUC-Cne-027031	Cryptococcus neoformans	44.34	8.00e-159	552.00
IUUC-Cme-027276	Cyanidioschyzon merolae	33.77	8.00e-68	250.00
IUUC-Dre-027514	Danio rerio	41.58	2.00e-149	521.00
IUUC-Dno-029191	Dasypus novemcinctus	43.14	2.00e-153	534.00
IUUC-Dor-030149	Dipodomys ordii	43.61	4.00e-154	536.00
IUUC-Dse-031260	Dothistroma septosporum	46.83	7.00e-131	459.00
IUUC-Dme-032043	Drosophila melanogaster	41.05	7.00e-129	453.00
IUUC-Ete-033102	Echinops telfairi	46.85	7.00e-142	496.00
IUUC-Eca-033223	Equus caballus	42.07	5.00e-153	533.00
IUUC-Fca-035795	Felis catus	41.86	2.00e-146	511.00
IUUC-Fal-036830	Ficedula albicollis	43.18	4.00e-159	553.00
IUUC-Fox-037835	Fusarium oxysporum	42.12	2.00e-138	484.00
IUUC-Fso-038324	Fusarium solani	42.68	1.00e-142	498.00
IUUC-Gmo-039355	Gadus morhua	41.35	4.00e-150	523.00
IUUC-Ggr-039840	Gaeumannomyces graminis	45.71	2.00e-134	471.00
IUUC-Gga-040907	Gallus gallus	44.27	8.00e-139	485.00
IUUC-Gac-042624	Gasterosteus aculeatus	41.25	5.00e-143	500.00
IUUC-Gma-043034	Glycine max	38.96	3.00e-43	168.00
IUUC-Hsa-046145	Homo sapiens	43.32	1.00e-153	535.00
IUUC-Hvu-047416	Hordeum vulgare	51.96	0.00e+00	634.00
IUUC-Itr-049083	Ictidomys tridecemlineatus	42.52	2.00e-156	544.00
IUUC-Kpa-049150	Komagataella pastoris	43.03	6.00e-133	466.00
IUUC-Lch-049460	Latimeria chalumnae	44.99	1.00e-135	475.00
IUUC-Lpe-050840	Leersia perrieri	51.18	0.00e+00	639.00
IUUC-Loc-052733	Lepisosteus oculatus	40.70	4.00e-153	533.00
IUUC-Lma-053277	Leptosphaeria maculans	44.34	3.00e-151	527.00
IUUC-Laf-054294	Loxodonta africana	46.67	2.00e-147	514.00
IUUC-Mcc-054624	Macaca mulatta	43.47	1.00e-154	538.00
IUUC-Meu-056665	Macropus eugenii	42.30	5.00e-89	320.00
IUUC-Mor-057288	Magnaporthe oryzae	42.68	1.00e-141	495.00
IUUC-Mpo-057594	Magnaporthe poae	45.45	9.00e-135	472.00
IUUC-Mtr-058700	Medicago truncatula	40.61	1.00e-48	186.00
IUUC-Mla-058846	Melampsora laricipopulina	43.73	3.00e-147	513.00
IUUC-Mga-059207	Meleagris gallopavo	40.09	1.00e-130	459.00
IUUC-Mvi-060327	Microbotryum violaceum	52.95	1.00e-164	572.00
IUUC-Mmr-061264	Microcebus murinus	42.88	7.00e-147	513.00
IUUC-Mdo-062327	Monodelphis domestica	41.44	9.00e-151	525.00
IUUC-Mmu-063542	Mus musculus	42.71	1.00e-146	511.00
IUUC-Mac-065142	Musa acuminata	50.84	0.00e+00	658.00
IUUC-Mpu-066098	Mustela putorius furo	43.33	2.00e-155	541.00
IUUC-Mlu-067056	Myotis lucifugus	37.29	2.00e-117	414.00
IUUC-Nfi-068323	Neosartorya fischeri	45.08	3.00e-156	544.00
IUUC-Ncr-068925	Neurospora crassa	42.23	2.00e-149	521.00
IUUC-Nle-068970	Nomascus leucogenys	43.57	3.00e-153	533.00
IUUC-Opr-070966	Ochotona princeps	53.94	3.00e-108	383.00
IUUC-Ont-071252	Oreochromis niloticus	41.50	2.00e-146	511.00
IUUC-Oan-072737	Ornithorhynchus anatinus	41.77	3.00e-148	517.00
IUUC-Oba-075794	Oryza barthii	49.37	1.00e-173	602.00
IUUC-Obr-076617	Oryza brachyantha	51.33	0.00e+00	639.00
IUUC-Ogl-077022	Oryza glaberrima	51.17	0.00e+00	640.00
IUUC-Ogu-078757	Oryza glumaepatula	38.57	4.00e-114	404.00
IUUC-Oin-079813	Oryza indica	50.86	0.00e+00	634.00
IUUC-Olo-080265	Oryza longistaminata	51.17	0.00e+00	639.00
IUUC-Ome-081494	Oryza meridionalis	42.48	3.00e-39	155.00
IUUC-Oni-082639	Oryza nivara	38.41	5.00e-113	400.00
IUUC-Opu-084005	Oryza punctata	51.16	0.00e+00	639.00
IUUC-Oru-084883	Oryza rufipogon	38.41	8.00e-114	402.00
IUUC-Osa-086158	Oryza sativa	50.86	0.00e+00	635.00
IUUC-Ola-086822	Oryzias latipes	42.31	3.00e-146	510.00
IUUC-Olu-087741	Ostreococcus lucimarinus	33.51	1.00e-21	93.20
IUUC-Oga-088887	Otolemur garnettii	42.68	4.00e-147	513.00
IUUC-Oar-090110	Ovis aries	42.23	8.00e-145	506.00
IUUC-Pan-092808	Papio anubis	43.47	2.00e-154	538.00
IUUC-Psi-093954	Pelodiscus sinensis	33.48	5.00e-29	121.00
IUUC-Pno-094922	Phaeosphaeria nodorum	44.62	9.00e-155	539.00
IUUC-Ppa-095678	Physcomitrella patens	49.16	3.00e-162	563.00
IUUC-Pfo-097175	Poecilia formosa	41.16	9.00e-153	532.00
IUUC-Pab-098155	Pongo abelii	43.01	3.00e-153	533.00
IUUC-Pop-099635	Populus trichocarpa	50.93	0.00e+00	635.00
IUUC-Pca-100947	Procavia capensis	39.24	1.00e-134	472.00
IUUC-Ppe-101552	Prunus persica	51.86	0.00e+00	662.00
IUUC-Pva-102744	Pteropus vampyrus	40.00	2.00e-131	461.00
IUUC-Pgr-103389	Puccinia graminis	44.11	2.00e-151	528.00
IUUC-Ptt-103953	Puccinia triticina	39.46	3.00e-109	387.00
IUUC-Pte-104079	Pyrenophora teres	43.72	3.00e-150	524.00
IUUC-Pyt-104656	Pyrenophora triticirepentis	44.79	1.00e-150	525.00
IUUC-Rno-105502	Rattus norvegicus	42.86	3.00e-154	537.00
IUUC-Sce-106390	Saccharomyces cerevisiae	42.02	2.00e-149	521.00
IUUC-Sha-107264	Sarcophilus harrisii	34.88	3.00e-73	267.00
IUUC-Sja-107674	Schizosaccharomyces japonicus	46.75	5.00e-156	543.00
IUUC-Spo-108348	Schizosaccharomyces pombe	47.11	1.00e-146	511.00
IUUC-Smo-109327	Selaginella moellendorffii	54.75	2.00e-176	610.00
IUUC-Sit-110304	Setaria italica	52.43	0.00e+00	659.00
IUUC-Sly-111620	Solanum lycopersicum	52.89	0.00e+00	631.00
IUUC-Stu-112877	Solanum tuberosum	51.80	0.00e+00	676.00
IUUC-Sbi-114702	Sorghum bicolor	52.01	0.00e+00	643.00
IUUC-Sre-115129	Sporisorium reilianum	47.58	3.00e-154	537.00
IUUC-Ssc-115931	Sus scrofa	38.12	1.00e-72	265.00
IUUC-Tgu-116787	Taeniopygia guttata	43.98	3.00e-158	550.00
IUUC-Tru-118218	Takifugu rubripes	40.45	1.00e-142	498.00
IUUC-Tsy-119401	Tarsius syrichta	39.85	5.00e-105	374.00
IUUC-Tni-120046	Tetraodon nigroviridis	42.26	1.00e-138	485.00
IUUC-Tca-121685	Theobroma cacao	52.80	0.00e+00	670.00
IUUC-Tre-122154	Trichoderma reesei	43.17	5.00e-150	523.00
IUUC-Tvi-122451	Trichoderma virens	43.53	2.00e-150	525.00
IUUC-Tae-125397	Triticum aestivum	50.68	1.00e-136	478.00
IUUC-Tur-126650	Triticum urartu	51.96	0.00e+00	649.00
IUUC-Tme-127005	Tuber melanosporum	46.77	2.00e-148	517.00
IUUC-Tbe-128102	Tupaia belangeri	53.41	2.00e-107	382.00
IUUC-Ttr-128259	Tursiops truncatus	37.22	1.00e-34	139.00
IUUC-Uma-129511	Ustilago maydis	47.89	2.00e-153	534.00
IUUC-Vda-129833	Verticillium dahliae	50.27	2.00e-107	381.00
IUUC-Vvi-131572	Vitis vinifera	52.42	0.00e+00	674.00
IUUC-Xtr-131776	Xenopus tropicalis	30.86	2.00e-45	175.00
IUUC-Xma-133887	Xiphophorus maculatus	41.31	4.00e-146	510.00
IUUC-Yli-134427	Yarrowia lipolytica	47.56	8.00e-154	535.00
IUUC-Zma-135980	Zea mays	51.96	0.00e+00	641.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence