iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Obr-076721

Ensembl Protein ID

OB07G26770.1

UniProt Accession

J3MMP5; J3MMP5_ORYBR

Protein Name

Ribosome biogenesis protein WDR12 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
OB07G26770	OB07G26770.1	OB07G26770.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.20e-36	122.9	274	309
UBD/Beta-Prp	4.20e-40	138.5	266	427

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclafsd.tllvsGsdDgtikvWDlrtgvl 35
           gHt  v+++a+++  ++ s+s+D++++ WD+ tg+ 
   Q: 274  GHTQCVSAVAWPEqQTIYSASWDHSVRQWDVQTGKE 309
           8**********77799****************9986 PP

UBD/Beta-Prp

   S: 84   gkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdl.ktgkllrtl..t 176
           g+ ++t+ gh++ v ++++ + ++++ s+s+d  +r wd++tg++    + +  ++ nc +  +++ +l+++G+ D ++r+Wd  k g+l   +  +
   Q: 266  GSATSTFLGHTQCVSAVAWPE-QQTIYSASWDHSVRQWDVQTGKET--WNMVCGRALNCFHCGGESsSLIAAGGSDPVLRVWDPrKPGTLAPIFqfS 359
           67899**************88.9**********************9..69999999*********99****************96556776666547 PP
   S: 177  gghtdsvyslsfdsng.kelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgs 245
           + h++ +   ++++++ ++lvs s dg+v lwdl+t   + ++  h+d v++v+ + +++ ++sg++D  
   Q: 360  S-HKSWISACKWHPSSwFHLVSSSFDGKVMLWDLRTAWPLASVDSHKDKVLCVDWW-KGDSVISGGADSK 427
           7.******************************************************.8999999999976 PP

Organism

Oryza brachyantha

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MDAAGASDPS RQVRVRFVTK LPPPLRAPHT SIAVPADLTR MGLSEIVNSL LLAASAGHQT 60
QPFDFLVDGE LVRLPLQEFL LAKGISAERV LELEYVKAVA PRKQEDPCPH DDWVSAVDGS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGACGCCG CCGGCGCCTC CGACCCCTCG CGCCAGGTGC GCGTGCGCTT CGTCACCAAG 60
CTCCCGCCGC CGCTGCGCGC GCCGCACACC TCCATCGCCG TGCCCGCCGA CCTCACCCGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0009506--C:plasmodesma
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	83.80	0.00e+00	754.00
IUUC-Aml-001997	Ailuropoda melanoleuca	35.25	3.00e-55	208.00
IUUC-Atr-002544	Amborella trichopoda	61.72	8.00e-160	555.00
IUUC-Apl-003981	Anas platyrhynchos	35.36	4.00e-57	214.00
IUUC-Aca-004370	Anolis carolinensis	34.44	5.00e-66	243.00
IUUC-Aly-006455	Arabidopsis lyrata	61.48	1.00e-164	572.00
IUUC-Ath-006669	Arabidopsis thaliana	61.19	4.00e-161	560.00
IUUC-Ago-007864	Ashbya gossypii	29.69	9.00e-44	170.00
IUUC-Acl-008177	Aspergillus clavatus	29.66	4.00e-41	161.00
IUUC-Afl-008617	Aspergillus flavus	30.37	4.00e-37	148.00
IUUC-Afu-008752	Aspergillus fumigatus	30.22	2.00e-38	152.00
IUUC-Ani-009136	Aspergillus nidulans	29.44	2.00e-38	152.00
IUUC-Ang-009701	Aspergillus niger	29.44	4.00e-36	144.00
IUUC-Aor-009884	Aspergillus oryzae	30.37	9.00e-38	150.00
IUUC-Ame-011432	Astyanax mexicanus	33.65	5.00e-64	237.00
IUUC-Bgr-012218	Blumeria graminis	28.85	1.00e-38	153.00
IUUC-Bta-012829	Bos taurus	34.05	4.00e-56	211.00
IUUC-Bci-013953	Botrytis cinerea	28.42	8.00e-39	153.00
IUUC-Bdi-014351	Brachypodium distachyon	83.14	0.00e+00	728.00
IUUC-Bol-016514	Brassica oleracea	61.96	2.00e-154	537.00
IUUC-Bra-016988	Brassica rapa	61.96	8.00e-155	538.00
IUUC-Cel-018569	Caenorhabditis elegans	24.36	4.00e-26	111.00
IUUC-Cja-019468	Callithrix jacchus	34.52	6.00e-54	203.00
IUUC-Cfa-020471	Canis familiaris	33.17	9.00e-54	203.00
IUUC-Cpo-022260	Cavia porcellus	35.48	8.00e-56	210.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	39.21	3.00e-64	238.00
IUUC-Csa-023989	Chlorocebus sabaeus	34.29	5.00e-54	204.00
IUUC-Cho-024426	Choloepus hoffmanni	33.33	2.00e-40	159.00
IUUC-Cin-025789	Ciona intestinalis	30.96	8.00e-50	190.00
IUUC-Cne-027063	Cryptococcus neoformans	26.02	3.00e-27	115.00
IUUC-Dre-027907	Danio rerio	35.15	2.00e-66	245.00
IUUC-Dno-029225	Dasypus novemcinctus	34.52	1.00e-56	213.00
IUUC-Dor-031082	Dipodomys ordii	28.31	5.00e-32	130.00
IUUC-Dse-031308	Dothistroma septosporum	33.69	1.00e-51	196.00
IUUC-Dme-032189	Drosophila melanogaster	28.98	5.00e-45	174.00
IUUC-Ete-032247	Echinops telfairi	32.86	9.00e-50	190.00
IUUC-Eca-034285	Equus caballus	34.29	3.00e-55	208.00
IUUC-Eeu-035322	Erinaceus europaeus	29.95	2.00e-45	175.00
IUUC-Fca-036114	Felis catus	34.76	3.00e-56	211.00
IUUC-Fal-036891	Ficedula albicollis	34.62	3.00e-50	191.00
IUUC-Fox-037965	Fusarium oxysporum	26.58	1.00e-32	133.00
IUUC-Fso-038244	Fusarium solani	27.79	2.00e-36	145.00
IUUC-Gmo-039040	Gadus morhua	34.61	2.00e-67	248.00
IUUC-Ggr-040093	Gaeumannomyces graminis	24.52	4.00e-28	118.00
IUUC-Gga-040610	Gallus gallus	34.36	4.00e-61	227.00
IUUC-Gac-042117	Gasterosteus aculeatus	34.92	6.00e-64	237.00
IUUC-Gma-043756	Glycine max	62.64	4.00e-164	570.00
IUUC-Ggo-045179	Gorilla gorilla	34.05	2.00e-53	202.00
IUUC-Hsa-046114	Homo sapiens	34.29	6.00e-54	203.00
IUUC-Hvu-047331	Hordeum vulgare	82.91	0.00e+00	662.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	34.76	2.00e-56	212.00
IUUC-Kpa-049304	Komagataella pastoris	28.97	2.00e-44	172.00
IUUC-Lch-050655	Latimeria chalumnae	30.72	4.00e-40	157.00
IUUC-Lpe-051675	Leersia perrieri	92.66	0.00e+00	821.00
IUUC-Loc-052868	Lepisosteus oculatus	34.27	1.00e-64	239.00
IUUC-Lma-053258	Leptosphaeria maculans	30.75	8.00e-43	168.00
IUUC-Laf-053993	Loxodonta africana	34.52	3.00e-56	211.00
IUUC-Mcc-055128	Macaca mulatta	29.73	5.00e-32	130.00
IUUC-Meu-056501	Macropus eugenii	34.32	3.00e-49	188.00
IUUC-Mor-057114	Magnaporthe oryzae	29.98	1.00e-39	156.00
IUUC-Mpo-057463	Magnaporthe poae	35.81	5.00e-18	83.20
IUUC-Mtr-058367	Medicago truncatula	60.23	2.00e-152	530.00
IUUC-Mla-059107	Melampsora laricipopulina	25.80	9.00e-36	143.00
IUUC-Mga-059745	Meleagris gallopavo	34.65	9.00e-60	223.00
IUUC-Mvi-060362	Microbotryum violaceum	25.64	3.00e-30	125.00
IUUC-Mdo-062257	Monodelphis domestica	34.76	1.00e-63	235.00
IUUC-Mmu-063546	Mus musculus	33.81	2.00e-55	208.00
IUUC-Mac-065540	Musa acuminata	71.53	0.00e+00	638.00
IUUC-Mpu-066284	Mustela putorius furo	34.29	6.00e-56	211.00
IUUC-Mlu-067241	Myotis lucifugus	34.05	3.00e-56	211.00
IUUC-Nfi-068260	Neosartorya fischeri	30.17	2.00e-40	159.00
IUUC-Ncr-068719	Neurospora crassa	28.95	2.00e-33	136.00
IUUC-Nle-068981	Nomascus leucogenys	34.52	6.00e-53	200.00
IUUC-Opr-071218	Ochotona princeps	33.00	2.00e-52	199.00
IUUC-Ont-071646	Oreochromis niloticus	34.05	2.00e-59	222.00
IUUC-Oan-073453	Ornithorhynchus anatinus	34.74	1.00e-65	243.00
IUUC-Ocu-074008	Oryctolagus cuniculus	34.76	5.00e-57	214.00
IUUC-Oba-075712	Oryza barthii	80.00	0.00e+00	672.00
IUUC-Ogl-077229	Oryza glaberrima	91.76	0.00e+00	819.00
IUUC-Ogu-078977	Oryza glumaepatula	80.47	0.00e+00	676.00
IUUC-Oin-079683	Oryza indica	91.76	0.00e+00	821.00
IUUC-Olo-080291	Oryza longistaminata	77.23	2.00e-138	483.00
IUUC-Ome-081834	Oryza meridionalis	92.27	0.00e+00	808.00
IUUC-Oni-082507	Oryza nivara	89.02	0.00e+00	785.00
IUUC-Opu-083396	Oryza punctata	92.40	0.00e+00	820.00
IUUC-Oru-085220	Oryza rufipogon	89.02	0.00e+00	785.00
IUUC-Osa-085767	Oryza sativa	91.76	0.00e+00	821.00
IUUC-Ola-087420	Oryzias latipes	33.97	3.00e-67	248.00
IUUC-Olu-087740	Ostreococcus lucimarinus	34.19	7.00e-64	236.00
IUUC-Oga-088264	Otolemur garnettii	33.33	5.00e-53	201.00
IUUC-Oar-089335	Ovis aries	34.29	2.00e-56	212.00
IUUC-Ptr-091320	Pan troglodytes	34.29	6.00e-54	203.00
IUUC-Pan-092833	Papio anubis	34.05	8.00e-54	203.00
IUUC-Psi-093504	Pelodiscus sinensis	33.57	1.00e-56	213.00
IUUC-Pma-094189	Petromyzon marinus	34.20	2.00e-59	222.00
IUUC-Pno-094929	Phaeosphaeria nodorum	30.38	8.00e-44	170.00
IUUC-Ppa-095429	Physcomitrella patens	50.00	1.00e-126	445.00
IUUC-Pfo-096337	Poecilia formosa	35.48	2.00e-66	245.00
IUUC-Pab-097571	Pongo abelii	34.29	7.00e-54	203.00
IUUC-Pop-099977	Populus trichocarpa	64.57	4.00e-167	579.00
IUUC-Pca-100394	Procavia capensis	32.25	6.00e-45	173.00
IUUC-Ppe-101848	Prunus persica	60.23	8.00e-163	565.00
IUUC-Pva-102921	Pteropus vampyrus	33.18	5.00e-23	101.00
IUUC-Pgr-103637	Puccinia graminis	26.65	6.00e-35	140.00
IUUC-Ptt-103781	Puccinia triticina	26.56	8.00e-33	134.00
IUUC-Pte-104135	Pyrenophora teres	30.98	2.00e-43	170.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	30.75	4.00e-44	171.00
IUUC-Rno-105114	Rattus norvegicus	34.05	1.00e-54	206.00
IUUC-Sce-106401	Saccharomyces cerevisiae	29.83	4.00e-44	171.00
IUUC-Sha-107122	Sarcophilus harrisii	34.76	1.00e-61	229.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	28.38	1.00e-40	159.00
IUUC-Spo-108134	Schizosaccharomyces pombe	29.02	1.00e-39	156.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	28.90	6.00e-43	167.00
IUUC-Smo-108761	Selaginella moellendorffii	48.36	3.00e-117	414.00
IUUC-Sit-110354	Setaria italica	84.30	0.00e+00	751.00
IUUC-Sly-111023	Solanum lycopersicum	57.26	2.00e-150	524.00
IUUC-Stu-112778	Solanum tuberosum	63.27	1.00e-160	558.00
IUUC-Sar-113596	Sorex araneus	31.10	2.00e-41	162.00
IUUC-Sbi-114193	Sorghum bicolor	82.18	0.00e+00	702.00
IUUC-Sre-115002	Sporisorium reilianum	22.27	6.00e-17	81.30
IUUC-Ssc-116066	Sus scrofa	34.29	5.00e-56	210.00
IUUC-Tgu-117048	Taeniopygia guttata	35.09	1.00e-56	213.00
IUUC-Tni-119820	Tetraodon nigroviridis	35.48	1.00e-62	232.00
IUUC-Tca-121605	Theobroma cacao	63.93	2.00e-169	587.00
IUUC-Tre-121947	Trichoderma reesei	27.07	4.00e-35	141.00
IUUC-Tvi-122481	Trichoderma virens	27.10	1.00e-34	139.00
IUUC-Tae-123504	Triticum aestivum	84.03	0.00e+00	755.00
IUUC-Tur-126586	Triticum urartu	83.92	0.00e+00	696.00
IUUC-Tme-126900	Tuber melanosporum	31.46	7.00e-53	200.00
IUUC-Tbe-127736	Tupaia belangeri	33.77	9.00e-20	90.10
IUUC-Ttr-129041	Tursiops truncatus	29.69	5.00e-39	154.00
IUUC-Uma-129628	Ustilago maydis	26.52	6.00e-09	54.70
IUUC-Vpa-130260	Vicugna pacos	34.29	5.00e-56	210.00
IUUC-Vvi-131009	Vitis vinifera	66.44	1.00e-175	608.00
IUUC-Xtr-132083	Xenopus tropicalis	35.39	5.00e-60	224.00
IUUC-Xma-133094	Xiphophorus maculatus	33.73	2.00e-65	242.00
IUUC-Yli-134531	Yarrowia lipolytica	26.37	3.00e-29	122.00
IUUC-Zma-135509	Zea mays	81.71	0.00e+00	731.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence