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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Rno-105578
UUCD1 version UUC-RaN-00742
Ensembl Protein ID ENSRNOP00000070908.1
UniProt Accession A0A0G2JZ48; A0A0G2JZ48_RAT
Genbank Protein ID EDL91422.1
Protein Name RCG56136, isoform CRA_a; TATA element modulatory factor 1
Genbank Nucleotide ID AC112891
Gene Name Tmf1; rCG_56136
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000056462.1 ENSRNOT00000087215.1 ENSRNOP00000070908.1
ENSRNOG00000056462.1 ENSRNOT00000091507.1 ENSRNOP00000074594.1
ENSRNOG00000056462.1 ENSRNOT00000083461.1 ENSRNOP00000070588.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFACRAID2
Post-translational Modifications (PTMs)
dbPAF
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
E3 adaptor/Cullin RING/ECS/SOCS_VHL_BC-box 86.22 0.00e+00 1498.00 IUUC-Hsa-046889
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Rattus norvegicus
Protein Sequence
(Fasta)
MSWFNASQLS SFAKQALSQA QKSIDRVLDI QEEEPSAWAE AIPYGEPGIS PSVSGGWDTS 60
TWGLNSSSEP QSSPTASQAI TKPVRRTVVD ESENFFSAFL SPSDVQTIQK SPVVSKPPAK 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Rno-105578|E3,SOCS|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GCGGCCGCGG GAGGCGGTGG GCCGGGGCCA CCGCTGAGGC CGCCGGTGCC GGCCGGACCC 60
GGCGCTGAGG AGGGGCCATG AGCTGGTTCA ATGCCTCGCA GTTGTCCAGC TTCGCCAAGC 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Rno-105578|E3,SOCS|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
Interpro

IPR022092--TMF_DNA-bd
IPR022091--TMF_TATA-bd
Pfam

PF12329--TMF_DNA_bd
PF12325--TMF_TATA_bd
Gene Ontology

GO:0005783--C:endoplasmic reticulum
GO:0005794--C:Golgi apparatus
GO:0001675--P:acrosome assembly
GO:0071407--P:cellular response to organic cyclic compound
GO:0042742--P:defense response to bacterium
GO:0030317--P:flagellated sperm motility
GO:0033327--P:Leydig cell differentiation
GO:0032275--P:luteinizing hormone secretion
GO:0043066--P:negative regulation of apoptotic process
GO:0010629--P:negative regulation of gene expression
GO:0001819--P:positive regulation of cytokine production
GO:2000845--P:positive regulation of testosterone secretion
GO:0061136--P:regulation of proteasomal protein catabolic process
GO:0007289--P:spermatid nucleus differentiation
KEGG rno:114206
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000973 Aegilops tauschii 28.57 8.00e-22 99.40
IUUC-Aml-001448 Ailuropoda melanoleuca 85.06 0.00e+00 1523.00
IUUC-Atr-003092 Amborella trichopoda 33.25 4.00e-28 120.00
IUUC-Apl-003546 Anas platyrhynchos 71.61 0.00e+00 1242.00
IUUC-Aca-004234 Anolis carolinensis 68.31 0.00e+00 1218.00
IUUC-Ath-007364 Arabidopsis thaliana 29.57 4.00e-24 107.00
IUUC-Acl-008271 Aspergillus clavatus 28.57 4.00e-12 67.00
IUUC-Afl-008405 Aspergillus flavus 25.81 2.00e-05 45.10
IUUC-Afu-009059 Aspergillus fumigatus 27.82 5.00e-12 67.00
IUUC-Ani-009416 Aspergillus nidulans 24.56 6.00e-12 66.20
IUUC-Ang-009857 Aspergillus niger 29.66 1.00e-11 65.10
IUUC-Aor-009910 Aspergillus oryzae 25.81 2.00e-05 45.10
IUUC-Ate-010427 Aspergillus terreus 32.00 3.00e-09 57.40
IUUC-Ame-011270 Astyanax mexicanus 64.11 0.00e+00 869.00
IUUC-Bgr-012100 Blumeria graminis 29.46 4.00e-08 53.50
IUUC-Bta-012337 Bos taurus 85.06 0.00e+00 1514.00
IUUC-Bci-013775 Botrytis cinerea 32.58 6.00e-06 46.60
IUUC-Bdi-014582 Brachypodium distachyon 29.73 1.00e-30 129.00
IUUC-Cel-018635 Caenorhabditis elegans 31.71 3.60e-01 29.30
IUUC-Cja-019803 Callithrix jacchus 85.77 0.00e+00 1544.00
IUUC-Cfa-020451 Canis familiaris 84.66 0.00e+00 1480.00
IUUC-Cpo-021327 Cavia porcellus 84.26 0.00e+00 1453.00
IUUC-Cre-022628 Chlamydomonas reinhardtii 28.21 7.70e-02 32.70
IUUC-Csa-023803 Chlorocebus sabaeus 86.58 0.00e+00 1558.00
IUUC-Cho-024293 Choloepus hoffmanni 76.24 9.00e-168 584.00
IUUC-Cin-025461 Ciona intestinalis 38.04 3.00e-38 152.00
IUUC-Cgl-026669 Colletotrichum gloeosporioides 29.60 8.00e-09 56.20
IUUC-Cme-027311 Cyanidioschyzon merolae 32.56 8.00e-05 42.40
IUUC-Dre-028098 Danio rerio 58.60 0.00e+00 958.00
IUUC-Dno-029535 Dasypus novemcinctus 84.49 0.00e+00 1491.00
IUUC-Dor-031120 Dipodomys ordii 83.30 0.00e+00 1523.00
IUUC-Dse-031548 Dothistroma septosporum 30.12 8.00e-06 45.80
IUUC-Dme-031658 Drosophila melanogaster 31.27 4.00e-20 94.00
IUUC-Ete-032764 Echinops telfairi 76.63 0.00e+00 911.00
IUUC-Eca-034312 Equus caballus 86.24 0.00e+00 1535.00
IUUC-Eeu-034967 Erinaceus europaeus 78.06 0.00e+00 850.00
IUUC-Fca-036312 Felis catus 85.84 0.00e+00 1546.00
IUUC-Fal-036979 Ficedula albicollis 71.08 0.00e+00 1155.00
IUUC-Fox-037833 Fusarium oxysporum 43.18 2.00e-06 47.80
IUUC-Gmo-039175 Gadus morhua 66.36 0.00e+00 690.00
IUUC-Ggr-039752 Gaeumannomyces graminis 32.74 9.00e-11 62.80
IUUC-Gga-041252 Gallus gallus 71.93 0.00e+00 1256.00
IUUC-Gac-042186 Gasterosteus aculeatus 68.54 0.00e+00 679.00
IUUC-Gma-042878 Glycine max 30.47 2.00e-23 105.00
IUUC-Ggo-045127 Gorilla gorilla 85.84 0.00e+00 1543.00
IUUC-Hsa-046889 Homo sapiens 86.22 0.00e+00 1550.00
IUUC-Hvu-047231 Hordeum vulgare 29.72 1.00e-30 129.00
IUUC-Itr-048895 Ictidomys tridecemlineatus 79.84 0.00e+00 1244.00
IUUC-Kpa-049375 Komagataella pastoris 35.64 6.00e-09 56.20
IUUC-Lch-049701 Latimeria chalumnae 67.20 0.00e+00 1123.00
IUUC-Lpe-051071 Leersia perrieri 37.82 1.00e-10 62.40
IUUC-Loc-052900 Lepisosteus oculatus 62.50 0.00e+00 1069.00
IUUC-Lma-053189 Leptosphaeria maculans 28.70 2.00e-07 51.60
IUUC-Laf-054583 Loxodonta africana 84.14 0.00e+00 1442.00
IUUC-Meu-056215 Macropus eugenii 66.10 5.00e-110 392.00
IUUC-Mor-057227 Magnaporthe oryzae 27.06 4.00e-08 53.50
IUUC-Mpo-057315 Magnaporthe poae 42.31 3.00e-07 50.40
IUUC-Mtr-058276 Medicago truncatula 30.00 9.00e-18 85.90
IUUC-Mga-059916 Meleagris gallopavo 71.23 0.00e+00 1169.00
IUUC-Mmr-061789 Microcebus murinus 77.13 0.00e+00 1092.00
IUUC-Mdo-062174 Monodelphis domestica 76.80 0.00e+00 1396.00
IUUC-Mmu-063422 Mus musculus 93.60 0.00e+00 1571.00
IUUC-Mac-065498 Musa acuminata 27.16 2.00e-21 98.20
IUUC-Mpu-065744 Mustela putorius furo 84.67 0.00e+00 1544.00
IUUC-Mlu-066925 Myotis lucifugus 83.05 0.00e+00 1391.00
IUUC-Nfi-068254 Neosartorya fischeri 27.82 3.00e-12 67.80
IUUC-Ncr-068887 Neurospora crassa 25.36 1.00e-10 62.00
IUUC-Nle-070100 Nomascus leucogenys 85.86 0.00e+00 1541.00
IUUC-Opr-071131 Ochotona princeps 78.80 0.00e+00 1082.00
IUUC-Ont-071378 Oreochromis niloticus 60.41 0.00e+00 946.00
IUUC-Oan-073705 Ornithorhynchus anatinus 75.43 0.00e+00 1366.00
IUUC-Ocu-074158 Oryctolagus cuniculus 85.45 0.00e+00 1586.00
IUUC-Oba-075498 Oryza barthii 37.82 4.00e-11 64.30
IUUC-Obr-076136 Oryza brachyantha 30.03 7.00e-30 126.00
IUUC-Ogl-077020 Oryza glaberrima 32.14 1.00e-22 102.00
IUUC-Ogu-078875 Oryza glumaepatula 37.82 2.00e-14 74.70
IUUC-Oin-079223 Oryza indica 32.14 1.00e-22 102.00
IUUC-Olo-080859 Oryza longistaminata 40.20 2.00e-09 58.50
IUUC-Ome-081621 Oryza meridionalis 37.82 4.00e-11 64.30
IUUC-Oni-082628 Oryza nivara 37.82 6.00e-11 63.50
IUUC-Opu-083825 Oryza punctata 37.82 6.00e-14 73.60
IUUC-Oru-084959 Oryza rufipogon 37.82 6.00e-11 63.50
IUUC-Osa-086104 Oryza sativa 32.14 1.00e-22 102.00
IUUC-Ola-087148 Oryzias latipes 58.57 0.00e+00 973.00
IUUC-Oga-088598 Otolemur garnettii 84.31 0.00e+00 1518.00
IUUC-Oar-090450 Ovis aries 84.00 0.00e+00 1496.00
IUUC-Ptr-091659 Pan troglodytes 86.04 0.00e+00 1545.00
IUUC-Pan-091964 Papio anubis 86.20 0.00e+00 1144.00
IUUC-Psi-093585 Pelodiscus sinensis 76.48 0.00e+00 924.00
IUUC-Pma-094379 Petromyzon marinus 48.64 0.00e+00 690.00
IUUC-Pno-095032 Phaeosphaeria nodorum 31.73 4.00e-08 53.90
IUUC-Ppa-095425 Physcomitrella patens 30.86 2.00e-47 184.00
IUUC-Pfo-096386 Poecilia formosa 65.09 0.00e+00 838.00
IUUC-Pab-098042 Pongo abelii 78.19 0.00e+00 734.00
IUUC-Pop-099005 Populus trichocarpa 28.04 4.00e-14 72.80
IUUC-Pca-100308 Procavia capensis 85.03 0.00e+00 1063.00
IUUC-Ppe-101449 Prunus persica 31.58 4.00e-22 100.00
IUUC-Pva-103119 Pteropus vampyrus 78.21 0.00e+00 1018.00
IUUC-Pte-104335 Pyrenophora teres 27.27 9.00e-10 59.30
IUUC-Pyt-104547 Pyrenophora triticirepentis 27.92 8.00e-11 62.80
IUUC-Sha-106612 Sarcophilus harrisii 75.59 0.00e+00 1297.00
IUUC-Sja-107911 Schizosaccharomyces japonicus 25.95 4.00e-03 36.20
IUUC-Spo-108059 Schizosaccharomyces pombe 30.16 2.00e-08 53.90
IUUC-Ssl-108390 Sclerotinia sclerotiorum 25.89 5.00e-14 73.60
IUUC-Smo-108781 Selaginella moellendorffii 29.09 4.00e-15 75.50
IUUC-Sit-109754 Setaria italica 32.14 4.00e-22 100.00
IUUC-Sly-111573 Solanum lycopersicum 29.16 6.00e-31 129.00
IUUC-Sar-113118 Sorex araneus 79.47 0.00e+00 1371.00
IUUC-Sbi-114519 Sorghum bicolor 30.47 3.00e-21 97.80
IUUC-Ssc-115826 Sus scrofa 81.04 0.00e+00 1431.00
IUUC-Tgu-116702 Taeniopygia guttata 72.27 0.00e+00 1172.00
IUUC-Tru-117915 Takifugu rubripes 59.17 0.00e+00 896.00
IUUC-Tsy-119224 Tarsius syrichta 86.41 0.00e+00 1546.00
IUUC-Tni-120157 Tetraodon nigroviridis 58.67 0.00e+00 890.00
IUUC-Tca-121361 Theobroma cacao 29.29 1.00e-17 84.70
IUUC-Tre-122066 Trichoderma reesei 36.36 9.00e-09 55.80
IUUC-Tvi-122562 Trichoderma virens 32.29 6.00e-09 56.60
IUUC-Tae-123602 Triticum aestivum 31.46 2.00e-19 91.30
IUUC-Tme-126895 Tuber melanosporum 31.66 1.00e-06 48.50
IUUC-Tbe-128074 Tupaia belangeri 77.11 0.00e+00 1107.00
IUUC-Ttr-128190 Tursiops truncatus 84.49 0.00e+00 1512.00
IUUC-Vda-129710 Verticillium dahliae 31.86 5.00e-11 63.20
IUUC-Vpa-130072 Vicugna pacos 84.83 0.00e+00 1384.00
IUUC-Vvi-130853 Vitis vinifera 45.56 2.00e-10 61.60
IUUC-Xtr-131969 Xenopus tropicalis 64.50 0.00e+00 1077.00
IUUC-Xma-133623 Xiphophorus maculatus 64.75 0.00e+00 869.00
IUUC-Yli-134550 Yarrowia lipolytica 26.51 7.00e-14 72.40
Created Date 25-Jun-2017

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