iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSONIG00000012953.1	ENSONIT00000016307.1	ENSONIP00000016292.1
ENSONIG00000012953.1	ENSONIT00000016308.1	ENSONIP00000016293.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	6.10e-17	62.0	417	460

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 3    vClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCr 52
           +C vC++gge    l++C+ C + +H +Cl+++  +e pn e wiCp+C+
   Q: 417  FCRVCKDGGE----LLCCDTCPSSYHIHCLNPP-LPEIPNGE-WICPRCK 460
           8*********....*******************.*******8.******6 PP

Organism

Oreochromis niloticus

Protein Sequence
(Fasta)

MQLAVWFFVL QELPVSSPEH LLGVEAAERD ADEGGMRSES EGSDYAPGRK KKKRSSSAKD 60
KKKGGAAAEK GGSSSSKSKR KDPEPEDDED DDDDCQPKSS TQLLEAWGMK DIDHVFTQED 120

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Nucleotide Sequence
(Fasta)

CCTCCTCCCT CGCCGACCGA GGAGCAAGGT TTAGGAGGGA TTAATTCGAC CAGCAAGAAA 60
TAAAATTAAA ACGCAGGGGA AAATGTCGTG CAGCGAGGAT GAGAGGGACG ACTTTGGGAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR028725--CHD4
IPR012957--CHD_C2
IPR012958--CHD_N
IPR000953--Chromo/chromo_shadow_dom
IPR023780--Chromo_domain
IPR016197--Chromodomain-like
IPR002464--DNA/RNA_helicase_DEAH_CS
IPR009462--DUF1086
IPR009463--DUF1087
IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR027417--P-loop_NTPase
IPR000330--SNF2_N
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50013--CHROMO_2
PS00690--DEAH_ATP_HELICASE
PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF08074--CHDCT2
PF08073--CHDNT
PF00385--Chromo
PF06461--DUF1086
PF06465--DUF1087
PF00271--Helicase_C
PF00628--PHD
PF00176--SNF2_N

SMART

SM00298--CHROMO
SM00487--DEXDc
SM01146--DUF1086
SM01147--DUF1087
SM00490--HELICc
SM00249--PHD

Gene Ontology

GO:0016581--C:NuRD complex
GO:0005524--F:ATP binding
GO:0008026--F:ATP-dependent helicase activity
GO:0003677--F:DNA binding
GO:0008270--F:zinc ion binding
GO:0006325--P:chromatin organization
GO:0006355--P:regulation of transcription, DNA-templated
GO:0051225--P:spindle assembly

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Apl-004175	Anas platyrhynchos	78.39	0.00e+00	2353.00
IUUC-Ame-011705	Astyanax mexicanus	82.72	0.00e+00	2481.00
IUUC-Ola-087154	Oryzias latipes	84.43	0.00e+00	2845.00
IUUC-Pfo-096727	Poecilia formosa	90.92	0.00e+00	2877.00
IUUC-Tru-118530	Takifugu rubripes	89.80	0.00e+00	2897.00
IUUC-Tni-120764	Tetraodon nigroviridis	90.19	0.00e+00	2860.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence